Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0140521 Rosa chinensis HOM05D002725 ORTHO05D026724 1.7e-24 115.2 58 100.0
FAN19G1008 Fragaria x ananassa HOM05D002725 ORTHO05D003279 2.9e-11 71.2 39 84.6
FAN26G2216 Fragaria x ananassa HOM05D002725 ORTHO05D003279 2.9e-11 71.2 39 84.6
FvH4_1g17710 Fragaria vesca HOM05D002725 ORTHO05D003279 4.1e-10 67.4 37 86.5
FAN23G0685 Fragaria x ananassa HOM05D002725 ORTHO05D003279 4.1e-10 67.4 37 86.5
FAN28G0598 Fragaria x ananassa HOM05D002725 ORTHO05D003279 4.1e-10 67.4 37 86.5
RcHm_v2.0_Chr2g0108041 Rosa chinensis HOM05D002725 ORTHO05D003279 4.1e-10 67.4 37 86.5
Prupe.5G061600 Prunus persica HOM05D002725 ORTHO05D003279 6.0e-09 63.5 37 78.4
MD02G1186000 Malus domestica HOM05D002725 ORTHO05D003279 7.8e-09 63.2 37 78.4
MD15G1297200 Malus domestica HOM05D002725 ORTHO05D003279 7.8e-09 63.2 37 78.4
Prupe.6G220500 Prunus persica HOM05D002725 ORTHO05D003279 7.8e-09 63.2 37 75.7
Actinidia01708 Actinidia chinensis HOM05D002725 ORTHO05D003279 1.3e-08 62.4 37 75.7
CANSAT56G0776 Cannabis sativa HOM05D002725 ORTHO05D003279 1.7e-08 62.0 37 73.0
Hma1.2p1_0867F.1_g230300 Hydrangea macrophylla HOM05D002725 ORTHO05D003279 1.7e-08 62.0 37 75.7
QL03p061701 Quercus lobata HOM05D002725 ORTHO05D003279 1.7e-08 62.0 37 73.0
Haze_12164 Corylus avellana HOM05D002725 ORTHO05D003279 2.3e-08 61.6 37 73.0
Lsat_1_v5_gn_1_10560 Lactuca sativa HOM05D002725 ORTHO05D003279 3.0e-08 61.2 37 73.0
Potri.002G176000 Populus trichocarpa HOM05D002725 ORTHO05D003279 3.0e-08 61.2 37 75.7
arahy.Tifrunner.gnm1.ann1.4NKX68 Arachis hypogaea HOM05D002725 ORTHO05D003279 3.9e-08 60.8 37 73.0
arahy.Tifrunner.gnm1.ann1.JTBU3D Arachis hypogaea HOM05D002725 ORTHO05D003279 3.9e-08 60.8 37 73.0
ClCG05G025230 Citrullus lanatus HOM05D002725 ORTHO05D003279 3.9e-08 60.8 37 73.0
Dinv24871 Davidia involucrata HOM05D002725 ORTHO05D003279 3.9e-08 60.8 37 73.0
Migut.K01129 Erythranthe guttata HOM05D002725 ORTHO05D003279 3.9e-08 60.8 36 75.0
Lalb_Chr22g0360531 Lupinus albus HOM05D002725 ORTHO05D003279 3.9e-08 60.8 37 73.0
Manes.12G030200 Manihot esculenta HOM05D002725 ORTHO05D003279 3.9e-08 60.8 37 70.3
PGR119G1015 Punica granatum HOM05D002725 ORTHO05D003279 3.9e-08 60.8 37 73.0
Sed0004453 Sechium edule HOM05D002725 ORTHO05D003279 3.9e-08 60.8 37 73.0
Aqoxy3G02968 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 5.1e-08 60.5 37 70.3
AUR62014016 Chenopodium quinoa HOM05D002725 ORTHO05D003279 5.1e-08 60.5 37 70.3
SalBow2G2496 Salvia bowleyana HOM05D002725 ORTHO05D003279 5.1e-08 60.5 37 70.3
Thecc.02G244300 Theobroma cacao HOM05D002725 ORTHO05D003279 5.1e-08 60.5 37 73.0
Duzib268G0345 Durio zibethinus HOM05D002725 ORTHO05D003279 6.6e-08 60.1 37 70.3
Nn3g16917 Nelumbo nucifera HOM05D002725 ORTHO05D003279 6.6e-08 60.1 37 70.3
Sabra02G0137700 Salix brachista HOM05D002725 ORTHO05D003279 6.6e-08 60.1 37 73.0
COL.COLO4_36975 Corchorus olitorius HOM05D002725 ORTHO05D003279 8.6e-08 59.7 37 70.3
Sc14g0008580 Simmondsia chinensis HOM05D002725 ORTHO05D003279 8.6e-08 59.7 37 70.3
Ah.02g129870 Amaranthus hybridus HOM05D002725 ORTHO05D003279 1.1e-07 59.3 37 70.3
MELO3C012005.2 Cucumis melo HOM05D002725 ORTHO05D003279 1.1e-07 59.3 37 70.3
CsaV3_5G031650 Cucumis sativus L. HOM05D002725 ORTHO05D003279 1.1e-07 59.3 37 70.3
Manes.13G031300 Manihot esculenta HOM05D002725 ORTHO05D003279 1.1e-07 59.3 37 70.3
TWI36G1289 Tripterygium wilfordii HOM05D002725 ORTHO05D003279 1.1e-07 59.3 37 73.0
TWI75G1526 Tripterygium wilfordii HOM05D002725 ORTHO05D003279 1.1e-07 59.3 37 73.0
EL10Ac6g13657 Beta vulgaris HOM05D002725 ORTHO05D003279 1.5e-07 58.9 38 65.8
Ciclev10031363m.g Citrus clementina HOM05D002725 ORTHO05D003279 1.5e-07 58.9 37 67.6
Duzib106G0624 Durio zibethinus HOM05D002725 ORTHO05D003279 1.5e-07 58.9 37 67.6
ECA233G4284 Erigeron canadensis HOM05D002725 ORTHO05D003279 1.5e-07 58.9 37 73.0
Oeu001743.1 Olea europaea HOM05D002725 ORTHO05D003279 1.5e-07 58.9 47 57.4
Potri.014G102800 Populus trichocarpa HOM05D002725 ORTHO05D003279 1.5e-07 58.9 37 70.3
Aa31LG2G10130 Aethionema arabicum HOM05D002725 ORTHO05D003279 1.9e-07 58.5 36 72.2
MSTRG.7887 Avicennia marina HOM05D002725 ORTHO05D003279 1.9e-07 58.5 37 67.6
CiPaw.05G149700 Carya illinoinensis HOM05D002725 ORTHO05D003279 1.9e-07 58.5 37 67.6
CiPaw.14G100600 Carya illinoinensis HOM05D002725 ORTHO05D003279 1.9e-07 58.5 37 67.6
MBI10_g36211_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 1.9e-07 58.5 37 67.6
MBI18_g25085_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 1.9e-07 58.5 37 67.6
Medtr7g037560 Medicago truncatula HOM05D002725 ORTHO05D003279 1.9e-07 58.5 37 67.6
Sp2g04490 Schrenkiella parvula HOM05D002725 ORTHO05D003279 1.9e-07 58.5 36 72.2
Cc11_g14540 Coffea canephora HOM05D002725 ORTHO05D003279 2.5e-07 58.2 37 70.3
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 2.5e-07 58.2 38 65.8
TPR.G9070 Trifolium pratense HOM05D002725 ORTHO05D003279 2.5e-07 58.2 37 67.6
vmacro16261 Vaccinium macrocarpon HOM05D002725 ORTHO05D003279 2.5e-07 58.2 37 67.6
BolC1t03648H Brassica oleracea HOM05D002725 ORTHO05D003279 3.3e-07 57.8 36 72.2
CSS0011985 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 3.3e-07 57.8 37 67.6
CSS0030976 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 3.3e-07 57.8 37 67.6
AUR62005361 Chenopodium quinoa HOM05D002725 ORTHO05D003279 3.3e-07 57.8 37 67.6
SGA_v2.0_scaffold36G14409 Striga asiatica HOM05D002725 ORTHO05D003279 3.3e-07 57.8 38 68.4
EL10Ac6g13658 Beta vulgaris HOM05D002725 ORTHO05D003279 4.3e-07 57.4 37 64.9
Eucgr.H02616 Eucalyptus grandis HOM05D002725 ORTHO05D003279 4.3e-07 57.4 37 67.6
HanXRQChr08g0234721 Helianthus annuus HOM05D002725 ORTHO05D003279 4.3e-07 57.4 37 67.6
Hund25340 Selenicereus undatus HOM05D002725 ORTHO05D003279 4.3e-07 57.4 37 62.2
Ca_06608_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 5.6e-07 57.0 37 67.6
Ca_25613_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 5.6e-07 57.0 37 67.6
THA.LOC104812782 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 5.6e-07 57.0 37 70.3
Aqoxy3G02787 Aquilegia oxysepala HOM05D002725 ORTHO05D026724 7.3e-07 56.6 35 68.6
CARHR292010 Cardamine hirsuta HOM05D002725 ORTHO05D003279 7.3e-07 56.6 36 69.4
PSO063G5148 Papaver somniferum HOM05D002725 ORTHO05D003279 9.5e-07 56.2 37 64.9
TAR371G0609 Trochodendron aralioides HOM05D002725 ORTHO05D003279 9.5e-07 56.2 36 66.7
Duzib251G0368 Durio zibethinus HOM05D002725 ORTHO05D026724 1.2e-06 55.8 41 65.9
Phvul.008G149300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 1.2e-06 55.8 37 70.3
THA.LOC104816751 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 1.2e-06 55.8 36 69.4
AL2G16480 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 1.6e-06 55.5 33 78.8
unitig_22.g6933 Utricularia gibba HOM05D002725 ORTHO05D003279 1.6e-06 55.5 37 64.9
HPP92_018031 Vanilla planifolia HOM05D002725 ORTHO05D003279 1.6e-06 55.5 37 64.9
GSVIVG01020223001 Vitis vinifera HOM05D002725 ORTHO05D003279 1.6e-06 55.5 37 64.9
A01p29130 Brassica napus HOM05D002725 ORTHO05D003279 2.1e-06 55.1 36 69.4
Carub.0002s0508 Capsella rubella HOM05D002725 ORTHO05D003279 2.1e-06 55.1 36 66.7
Psat3g161280 Pisum sativum HOM05D002725 ORTHO05D003279 2.8e-06 54.7 37 62.2
AL2G29710 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 3.6e-06 54.3 35 68.6
AL2G29730 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 3.6e-06 54.3 35 68.6
Lsat_1_v5_gn_8_158161 Lactuca sativa HOM05D002725 ORTHO05D003279 4.7e-06 53.9 37 62.2
PSO832G2366 Papaver somniferum HOM05D002725 ORTHO05D003279 4.7e-06 53.9 37 62.2
Peaxi162Scf00301g00128 Petunia axillaris HOM05D002725 ORTHO05D003279 6.2e-06 53.5 37 70.3
TPR.G37028 Trifolium pratense HOM05D002725 ORTHO05D003279 6.2e-06 53.5 37 62.2


User provided reference genes

Program Settings