Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0140351 Rosa chinensis HOM05D002121 ORTHO05D347770 7.7e-49 196.8 99 100.0
RcHm_v2.0_Chr4g0425031 Rosa chinensis HOM05D005083 ORTHO05D006310 7.8e-25 117.1 66 90.9
FvH4_6g00120 Fragaria vesca HOM05D005083 ORTHO05D006310 6.6e-08 60.8 42 71.4
FAN02G1711 Fragaria x ananassa HOM05D005083 ORTHO05D006310 6.6e-08 60.8 42 71.4
FAN09G1831 Fragaria x ananassa HOM05D005083 ORTHO05D006310 6.6e-08 60.8 42 71.4
RcHm_v2.0_Chr3g0447481 Rosa chinensis HOM05D005083 ORTHO05D006310 6.6e-08 60.8 42 71.4
Cfa006235 Carpinus fangiana HOM05D005083 ORTHO05D006310 1.9e-07 59.3 42 69.0
Haze_04595 Corylus avellana HOM05D005083 ORTHO05D006310 1.9e-07 59.3 42 69.0
COL.COLO4_27674 Corchorus olitorius HOM05D002121 ORTHO05D004000 2.5e-07 58.9 44 68.2
Prupe.7G036600 Prunus persica HOM05D005083 ORTHO05D006310 2.5e-07 58.9 42 71.4
MBI19_g24072_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D004000 3.3e-07 58.5 36 77.8
FvH4_2g27460 Fragaria vesca HOM05D002121 ORTHO05D004000 4.3e-07 58.2 32 87.5
FAN15G3634 Fragaria x ananassa HOM05D002121 ORTHO05D004000 4.3e-07 58.2 32 87.5
FAN20G0745 Fragaria x ananassa HOM05D002121 ORTHO05D004000 4.3e-07 58.2 32 87.5
FAN24G3414 Fragaria x ananassa HOM05D002121 ORTHO05D004000 4.3e-07 58.2 32 87.5
FAN27G1520 Fragaria x ananassa HOM05D002121 ORTHO05D004000 4.3e-07 58.2 32 87.5
RcHm_v2.0_Chr6g0296301 Rosa chinensis HOM05D002121 ORTHO05D004000 4.3e-07 58.2 32 87.5
Atru.chr12.1671 Acer truncatum HOM05D005083 ORTHO05D006310 7.3e-07 57.4 42 66.7
Atru.chr4.1877 Acer truncatum HOM05D005083 ORTHO05D006310 7.3e-07 57.4 42 66.7
ClCG10G004080 Citrullus lanatus HOM05D005083 ORTHO05D006310 7.3e-07 57.4 42 66.7
Ciclev10004486m.g Citrus clementina HOM05D005083 ORTHO05D006310 7.3e-07 57.4 42 66.7
MELO3C014078.2 Cucumis melo HOM05D005083 ORTHO05D006310 7.3e-07 57.4 42 66.7
CsaV3_3G003930 Cucumis sativus L. HOM05D005083 ORTHO05D006310 7.3e-07 57.4 42 66.7
QL08p044788 Quercus lobata HOM05D005083 ORTHO05D006310 7.3e-07 57.4 42 66.7
RcHm_v2.0_Chr5g0069521 Rosa chinensis HOM05D005083 ORTHO05D346768 7.3e-07 57.4 35 85.7
MD00G1028400 Malus domestica HOM05D002121 ORTHO05D004000 9.5e-07 57.0 32 84.4
MD15G1344700 Malus domestica HOM05D002121 ORTHO05D004000 9.5e-07 57.0 32 84.4
Prupe.1G492900 Prunus persica HOM05D002121 ORTHO05D004000 9.5e-07 57.0 32 84.4
CANSAT54G2676 Cannabis sativa HOM05D005083 ORTHO05D006310 1.2e-06 56.6 42 66.7
BcaB01g04935 Brassica carinata HOM05D005083 ORTHO05D006310 1.6e-06 56.2 42 66.7
C08p21090 Brassica napus HOM05D002121 ORTHO05D004000 1.6e-06 56.2 32 84.4
BolC8t49746H Brassica oleracea HOM05D002121 ORTHO05D004000 1.6e-06 56.2 32 84.4
Migut.F01835 Erythranthe guttata HOM05D005083 ORTHO05D006310 1.6e-06 56.2 42 66.7
AUR62031691 Chenopodium quinoa HOM05D002121 ORTHO05D004000 2.1e-06 55.8 32 81.2
AUR62032572 Chenopodium quinoa HOM05D002121 ORTHO05D004000 2.1e-06 55.8 32 81.2
Gohir.A02G072200 Gossypium hirsutum HOM05D002121 ORTHO05D004000 2.1e-06 55.8 32 81.2
Gohir.A06G046300 Gossypium hirsutum HOM05D002121 ORTHO05D004000 2.1e-06 55.8 32 81.2
Gohir.D02G079400 Gossypium hirsutum HOM05D002121 ORTHO05D004000 2.1e-06 55.8 32 81.2
Gorai.005G088700 Gossypium raimondii HOM05D002121 ORTHO05D004000 2.1e-06 55.8 32 81.2
MD14G1089300 Malus domestica HOM05D005083 ORTHO05D006310 2.1e-06 55.8 42 66.7
Hund26793 Selenicereus undatus HOM05D002121 ORTHO05D004000 2.1e-06 55.8 32 81.2
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
ATR0665G267 Amborella trichopoda HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
AL1G34890 Arabidopsis lyrata HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
AL2G37640 Arabidopsis lyrata HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
AT1G21720 Arabidopsis thaliana HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
AT1G77440 Arabidopsis thaliana HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BcaB01g05202 Brassica carinata HOM05D005083 ORTHO05D006310 2.8e-06 55.5 42 66.7
BcaB03g12778 Brassica carinata HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BcaB03g14256 Brassica carinata HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BcaB07g32169 Brassica carinata HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BcaC05g26091 Brassica carinata HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BcaC06g34901 Brassica carinata HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BcaC07g39113 Brassica carinata HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
A02p21280 Brassica napus HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
A03p08290 Brassica napus HOM05D001138 ORTHO05D006310 2.8e-06 55.5 42 66.7
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
A07p14950 Brassica napus HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
A08p28840 Brassica napus HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
C03p09650 Brassica napus HOM05D001138 ORTHO05D006310 2.8e-06 55.5 42 66.7
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
C07p22000 Brassica napus HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
C08p21020 Brassica napus HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BolC2t09484H Brassica oleracea HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BolC3t13463H Brassica oleracea HOM05D005083 ORTHO05D006310 2.8e-06 55.5 42 66.7
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BolC7t42730H Brassica oleracea HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BolC8t49739H Brassica oleracea HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BraA02t07146Z Brassica rapa HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BraA03t10156Z Brassica rapa HOM05D005083 ORTHO05D006310 2.8e-06 55.5 42 66.7
BraA06t24873Z Brassica rapa HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BraA07t29241Z Brassica rapa HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
BraA08t34814Z Brassica rapa HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Carub.0001s2116 Capsella rubella HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Carub.0002s2433 Capsella rubella HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
CARHR022080 Cardamine hirsuta HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
CARHR070960 Cardamine hirsuta HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Ca_08349_v3 Cicer arietinum L. HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Cc10_g12240 Coffea canephora HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
CsaV3_6G034220 Cucumis sativus L. HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Duzib093G1643 Durio zibethinus HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 78.1
Thhalv10008793m.g Eutrema salsugineum HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Gohir.D06G046700 Gossypium hirsutum HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Gorai.010G052100 Gossypium raimondii HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Lsat_1_v5_gn_1_128760 Lactuca sativa HOM05D002121 ORTHO05D005786 2.8e-06 55.5 32 78.1
Lj4A634T18 Lonicera japonica HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Lj7A345G35 Lonicera japonica HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Nn1g08872 Nelumbo nucifera HOM05D002121 ORTHO05D004000 2.8e-06 55.5 31 83.9
Nn1g08885 Nelumbo nucifera HOM05D002121 ORTHO05D004000 2.8e-06 55.5 31 83.9
Nn5g28369 Nelumbo nucifera HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Oeu001543.1 Olea europaea HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
PSO017G2497 Papaver somniferum HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
PSO170G6731 Papaver somniferum HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Peaxi162Scf00156g00512 Petunia axillaris HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Psat3g083080 Pisum sativum HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Potri.002G080800 Populus trichocarpa HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 78.1
Potri.005G180500 Populus trichocarpa HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
PGR042G0208 Punica granatum HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
QL09p033791 Quercus lobata HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Sabra02G0063300 Salix brachista HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 78.1
Sabra05G0136500 Salix brachista HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
Sp1g19280 Schrenkiella parvula HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
THA.LOC104800211 Tarenaya hassleriana HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
THA.LOC104804987 Tarenaya hassleriana HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
THA.LOC104813671 Tarenaya hassleriana HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
TPR.G27967 Trifolium pratense HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
TAR365G0104 Trochodendron aralioides HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
TAR376G0833 Trochodendron aralioides HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
VMungo1309G2538 Vigna mungo HOM05D002121 ORTHO05D004000 2.8e-06 55.5 32 81.2
GSVIVG01032444001 Vitis vinifera HOM05D005083 ORTHO05D006310 2.8e-06 55.5 42 64.3
CiPaw.07G085600 Carya illinoinensis HOM05D005083 ORTHO05D006310 3.6e-06 55.1 42 64.3
CiPaw.16G025700 Carya illinoinensis HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
CDE02G4797 Ceratophyllum demersum HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
CDE08G0451 Ceratophyllum demersum HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
Haze_17514 Corylus avellana HOM05D002121 ORTHO05D004000 3.6e-06 55.1 47 61.7
DCAR_003564 Daucus carota HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
Duzib041G0810 Durio zibethinus HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
Gohir.A05G269100 Gossypium hirsutum HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
Gohir.D05G271000 Gossypium hirsutum HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
Gorai.009G283900 Gossypium raimondii HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
Lsat_1_v5_gn_6_110200 Lactuca sativa HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 3.6e-06 55.1 42 64.3
Hund17310 Selenicereus undatus HOM05D008000 ORTHO05D010275 3.6e-06 55.1 32 78.1
Sc15g0002950 Simmondsia chinensis HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
Thecc.08G129300 Theobroma cacao HOM05D002121 ORTHO05D004000 3.6e-06 55.1 32 78.1
arahy.Tifrunner.gnm1.ann1.J0H6IE Arachis hypogaea HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
arahy.Tifrunner.gnm1.ann1.XA2R2M Arachis hypogaea HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
MSTRG.8186 Avicennia marina HOM05D005083 ORTHO05D006310 4.7e-06 54.7 42 64.3
BcaC03g15738 Brassica carinata HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 81.2
Cpa.g.sc64.119 Carica papaya HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Ciclev10002515m.g Citrus clementina HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
COL.COLO4_09706 Corchorus olitorius HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
COL.COLO4_37931 Corchorus olitorius HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Dinv14644 Davidia involucrata HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Dinv27284 Davidia involucrata HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Eucgr.F04339 Eucalyptus grandis HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Glyma.04G249300 Glycine max HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Glyma.13G031200 Glycine max HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Glyma.14G152900 Glycine max HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Lj1g0026115 Lotus japonicus HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Lalb_Chr23g0271041 Lupinus albus HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Manes.18G079800 Manihot esculenta HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Nn1g09878 Nelumbo nucifera HOM05D005083 ORTHO05D006310 4.7e-06 54.7 42 64.3
Nitab4.5_0001436g0070 Nicotiana tabacum HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Nitab4.5_0005183g0080 Nicotiana tabacum HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Phvul.001G072000 Phaseolus vulgaris HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
VMungo0647G0803 Vigna mungo HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
GSVIVG01008836001 Vitis vinifera HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Zm00001eb275340 Zea mays HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Zm00001eb387100 Zea mays HOM05D002121 ORTHO05D004000 4.7e-06 54.7 32 78.1
Atru.chr2.236 Acer truncatum HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
Ah.10g029910 Amaranthus hybridus HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
Ah.12g064800 Amaranthus hybridus HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
ECA246G2935 Erigeron canadensis HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
Thhalv10019145m.g Eutrema salsugineum HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
HanXRQChr05g0149801 Helianthus annuus HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
HanXRQChr09g0241421 Helianthus annuus HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
HanXRQChr11g0353161 Helianthus annuus HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
Lj1g0018463 Lotus japonicus HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
MBI18_g06041_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
Nitab4.5_0004105g0060 Nicotiana tabacum HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
Nitab4.5_0013462g0020 Nicotiana tabacum HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
Peaxi162Scf00842g00320 Petunia axillaris HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
THA.LOC104820850 Tarenaya hassleriana HOM05D005083 ORTHO05D006310 6.2e-06 54.3 42 64.3
TWI32G1181 Tripterygium wilfordii HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
TWI34G0148 Tripterygium wilfordii HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
TWI60G0392 Tripterygium wilfordii HOM05D002121 ORTHO05D004000 6.2e-06 54.3 32 78.1
Aa31LG11G12310 Aethionema arabicum HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 64.3
AagrBONN_evm.TU.Sc2ySwM_344.4983 Anthoceros agrestis HOM05D002121 ORTHO05D004000 8.1e-06 53.9 31 80.6
AL6G28480 Arabidopsis lyrata HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 64.3
AT5G17410 Arabidopsis thaliana HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 64.3
EL10Ac2g02722 Beta vulgaris HOM05D002121 ORTHO05D004000 8.1e-06 53.9 32 78.1
C09p59750 Brassica napus HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 64.3
BolC9t58815H Brassica oleracea HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 64.3
BraA10t44257Z Brassica rapa HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 64.3
Carub.0006s1563 Capsella rubella HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 64.3
CARHR195800 Cardamine hirsuta HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 64.3
Manes.13G001400 Manihot esculenta HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 61.9
Potri.010G180700 Populus trichocarpa HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 61.9
Rhsim06G0101600 Rhododendron simsii HOM05D002121 ORTHO05D004000 8.1e-06 53.9 32 75.0
Sp5g32590 Schrenkiella parvula HOM05D002121 ORTHO05D004000 8.1e-06 53.9 32 75.0
Sp6g26810 Schrenkiella parvula HOM05D005083 ORTHO05D006310 8.1e-06 53.9 42 64.3


User provided reference genes

Program Settings