Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 1.7e-24 115.2 56 100.0
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 3.0e-13 77.8 43 86.0
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 3.0e-13 77.8 43 86.0
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 5.6e-12 73.6 43 79.1
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 7.3e-12 73.2 43 81.4
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 9.5e-12 72.8 43 83.7
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.2e-11 70.1 43 81.4
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.0e-11 69.7 54 64.8
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 1.1e-10 69.3 43 81.4
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 1.1e-10 69.3 43 81.4
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 1.1e-10 69.3 43 81.4
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 1.4e-10 68.9 43 81.4
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 1.4e-10 68.9 43 81.4
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 1.8e-10 68.6 43 79.1
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 1.8e-10 68.6 55 65.5
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 3.1e-10 67.8 43 81.4
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.1e-10 67.8 43 79.1
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 4.0e-10 67.4 43 79.1
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.0e-10 67.4 43 79.1
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 4.0e-10 67.4 43 79.1
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.0e-10 67.4 43 79.1
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 4.0e-10 67.4 43 79.1
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.0e-10 67.4 43 79.1
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.0e-10 67.4 43 79.1
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.0e-10 67.4 43 79.1
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.0e-10 67.4 43 79.1
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.0e-10 67.4 43 79.1
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.0e-10 67.4 43 79.1
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.0e-10 67.4 43 79.1
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.0e-10 67.4 43 79.1
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.0e-10 67.4 43 79.1
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 5.2e-10 67.0 43 79.1
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 5.2e-10 67.0 43 79.1
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 5.2e-10 67.0 43 79.1
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 5.2e-10 67.0 43 79.1
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 5.2e-10 67.0 43 79.1
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 6.8e-10 66.6 42 78.6
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 6.8e-10 66.6 54 64.8
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 8.9e-10 66.2 43 79.1
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 8.9e-10 66.2 43 79.1
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 8.9e-10 66.2 43 76.7
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 8.9e-10 66.2 43 74.4
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 8.9e-10 66.2 43 74.4
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 8.9e-10 66.2 43 79.1
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 8.9e-10 66.2 43 79.1
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 8.9e-10 66.2 43 79.1
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 8.9e-10 66.2 43 79.1
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 8.9e-10 66.2 43 79.1
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 8.9e-10 66.2 43 76.7
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.2e-09 65.9 43 76.7
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 76.7
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 79.1
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 1.5e-09 65.5 58 60.3
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 1.5e-09 65.5 43 74.4
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 74.4
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 74.4
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 74.4
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 74.4
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 74.4
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 74.4
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 1.5e-09 65.5 43 74.4
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 74.4
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 1.5e-09 65.5 43 74.4
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 74.4
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 74.4
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 74.4
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 79.1
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 79.1
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 79.1
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 1.5e-09 65.5 43 79.1
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-09 65.1 43 76.7
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 3.4e-09 64.3 43 74.4
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 3.4e-09 64.3 43 74.4
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.4e-09 64.3 43 76.7
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 3.4e-09 64.3 43 74.4
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 4.4e-09 63.9 43 74.4
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 4.4e-09 63.9 43 74.4
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 4.4e-09 63.9 43 74.4
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 4.4e-09 63.9 43 76.7
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 5.8e-09 63.5 43 72.1
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.8e-09 63.5 43 74.4
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.8e-09 63.5 43 72.1
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 7.5e-09 63.2 43 69.8
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 9.8e-09 62.8 43 74.4
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 9.8e-09 62.8 43 74.4
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 9.8e-09 62.8 43 74.4
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 9.8e-09 62.8 40 80.0
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 1.3e-08 62.4 53 60.4
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.3e-08 62.4 42 71.4
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 1.7e-08 62.0 43 74.4
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.7e-08 62.0 43 74.4
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 1.7e-08 62.0 42 73.8
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 1.7e-08 62.0 43 69.8
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 2.2e-08 61.6 43 69.8
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 2.9e-08 61.2 43 74.4
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 3.7e-08 60.8 41 75.6
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 3.7e-08 60.8 43 72.1
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 4.9e-08 60.5 43 74.4
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 8.3e-08 59.7 43 72.1
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 8.3e-08 59.7 43 69.8
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.3e-08 59.7 41 73.2
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 1.1e-07 59.3 43 72.1
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-07 59.3 43 69.8
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 1.9e-07 58.5 38 76.3
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 2.4e-07 58.2 43 67.4
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 5.4e-07 57.0 54 55.6
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 7.0e-07 56.6 38 76.3
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.0e-07 56.6 52 57.7
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 7.0e-07 56.6 43 67.4
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 1.2e-06 55.8 43 69.8
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 1.6e-06 55.5 43 69.8
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 1.6e-06 55.5 40 72.5
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 2.1e-06 55.1 43 65.1
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 2.7e-06 54.7 43 72.1
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 3.5e-06 54.3 54 59.3
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.6e-06 53.9 43 67.4
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.6e-06 53.9 43 69.8
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 4.6e-06 53.9 36 80.6
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 6.0e-06 53.5 43 65.1
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.8e-06 53.1 38 71.1


User provided reference genes

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