Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 4.0e-182 641.3 332 100.0
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.7e-172 608.2 332 94.9
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 1.6e-162 576.2 318 94.3
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.0e-153 547.0 315 91.4
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 8.4e-148 527.3 302 90.7
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.4e-147 525.8 302 90.4
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 7.3e-144 514.2 321 84.4
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 1.6e-143 513.1 318 84.6
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 4.0e-142 508.4 324 83.3
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 6.9e-142 507.7 318 84.3
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 4.9e-140 501.5 319 83.4
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 3.9e-137 491.9 319 81.2
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 8.7e-137 490.7 319 81.2
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.8e-134 483.0 319 80.3
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.8e-134 483.0 318 78.9
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 6.9e-134 481.1 320 78.4
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 1.2e-133 480.3 318 78.0
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 1.2e-133 480.3 321 79.8
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 1.2e-133 480.3 320 79.4
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 2.0e-133 479.6 320 79.1
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 4.5e-133 478.4 319 79.9
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 5.8e-133 478.0 319 79.9
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 2.2e-132 476.1 321 77.9
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 3.8e-132 475.3 320 77.2
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 3.8e-132 475.3 321 77.6
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 2.4e-131 472.6 320 76.6
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 3.2e-131 472.2 322 78.6
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 9.3e-131 470.7 319 78.4
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.1e-130 469.5 319 76.5
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 6.0e-130 468.0 318 76.7
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 6.0e-130 468.0 323 78.3
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 6.0e-130 468.0 325 75.1
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 7.9e-130 467.6 319 77.4
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 7.9e-130 467.6 319 78.7
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.8e-129 466.5 319 78.4
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.1e-129 464.9 320 76.6
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.1e-128 463.8 319 75.9
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.1e-128 463.8 321 76.9
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.5e-128 463.4 321 77.3
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 1.9e-128 463.0 320 75.9
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.6e-128 461.5 321 76.9
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 5.6e-128 461.5 318 75.8
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 2.1e-127 459.5 318 74.8
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.1e-127 459.5 319 76.5
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.8e-127 459.1 320 75.0
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.7e-127 458.8 319 76.2
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.7e-127 458.8 319 76.2
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.4e-126 456.8 321 75.7
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 1.8e-126 456.4 319 76.2
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 5.3e-126 454.9 323 75.2
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.6e-125 452.6 319 75.5
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.4e-125 452.2 321 75.1
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.8e-125 451.4 321 75.4
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 5.8e-125 451.4 326 73.6
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 7.6e-125 451.1 323 74.0
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 7.6e-125 451.1 321 75.4
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 6.4e-124 448.0 325 74.5
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 8.4e-124 447.6 319 74.3
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 8.4e-124 447.6 331 71.3
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.1e-123 447.2 322 73.0
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.4e-123 446.8 322 73.0
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.9e-123 446.4 319 74.3
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 4.2e-123 445.3 326 74.5
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 1.2e-122 443.7 318 74.5
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 1.6e-122 443.4 308 74.7
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.6e-122 443.4 319 75.2
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 2.1e-122 443.0 325 74.2
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.7e-122 442.6 319 75.2
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 1.3e-121 440.3 320 72.8
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 2.3e-121 439.5 319 72.7
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 3.0e-121 439.1 327 72.2
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 1.5e-120 436.8 319 74.3
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.9e-120 436.4 325 72.9
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 3.3e-120 435.6 320 71.6
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 5.6e-120 434.9 322 70.8
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.8e-119 432.6 321 71.3
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 4.8e-119 431.8 322 72.0
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.2e-119 431.4 321 72.0
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 8.2e-119 431.0 319 71.5
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 8.2e-119 431.0 321 71.7
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.0e-117 426.4 320 72.2
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.6e-117 426.0 320 69.4
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 1.4e-115 420.2 323 70.9
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.5e-115 419.5 318 70.8
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 3.2e-115 419.1 324 71.6
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 4.2e-115 418.7 319 69.6
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 5.5e-115 418.3 323 71.2
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 1.2e-114 417.2 323 70.0
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 2.1e-114 416.4 322 70.8
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.7e-114 416.0 320 70.9
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 3.5e-114 415.6 318 70.1
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 3.5e-114 415.6 323 70.3
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 7.9e-114 414.5 323 70.0
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.0e-113 414.1 323 70.0
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.0e-113 414.1 323 70.0
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 1.0e-113 414.1 321 70.1
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 1.3e-113 413.7 323 68.7
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 1.8e-113 413.3 323 70.0
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 1.8e-113 413.3 323 69.7
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 5.1e-113 411.8 323 69.7
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 6.7e-113 411.4 318 70.1
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 1.9e-112 409.8 324 69.8
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 3.3e-112 409.1 304 70.7
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 5.7e-112 408.3 305 71.5
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 3.7e-111 405.6 321 69.2
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 6.9e-110 401.4 324 68.2
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.2e-109 400.6 329 66.9
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 2.6e-109 399.4 324 68.5
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 5.9e-109 398.3 321 67.0
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 5.9e-109 398.3 321 67.0
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 7.6e-109 397.9 319 67.4
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.3e-108 397.1 321 66.7
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.7e-108 396.7 321 66.7
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 8.5e-108 394.4 323 68.4
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.1e-107 394.0 319 66.5
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.4e-107 393.7 329 65.7
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 3.2e-107 392.5 318 67.6
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 4.2e-107 392.1 325 67.7
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 5.5e-107 391.7 306 67.3
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 5.7e-104 381.7 327 63.9
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 7.4e-104 381.3 321 64.2
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.3e-103 380.6 326 62.9
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 1.3e-100 370.5 321 65.4
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 5.0e-100 368.6 319 65.5
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 4.2e-99 365.5 319 65.5
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 6.1e-98 361.7 314 63.7
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.0e-97 360.9 445 50.3
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.7e-92 343.6 324 58.0
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 2.2e-92 343.2 288 66.0
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 4.4e-88 328.9 329 58.7
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 5.9e-85 318.5 261 66.7
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 3.8e-84 315.8 253 68.0
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 2.2e-76 290.0 323 51.4
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 3.2e-75 286.2 338 47.6
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 8.0e-74 281.6 340 48.5
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 3.0e-73 279.6 328 49.4
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.2e-55 220.3 150 76.0
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.6e-53 212.6 332 44.3
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 3.3e-51 206.5 362 39.2
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 1.5e-43 181.0 231 48.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 1.9e-43 180.6 233 44.6
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 4.3e-43 179.5 381 33.1
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.8e-41 172.2 179 54.7
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.7e-39 167.5 152 55.3
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 2.3e-36 157.1 161 55.9
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 3.6e-34 149.8 138 58.7
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.8e-26 123.6 69 91.3
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 5.3e-25 119.4 69 84.1
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.2e-24 118.2 104 63.5
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 2.1e-21 107.5 336 28.9
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.0e-20 103.6 75 58.7
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 8.7e-20 102.1 62 79.0
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.6e-18 97.8 317 28.7
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.1e-17 95.1 57 82.5
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 2.4e-17 94.0 59 84.7
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 2.6e-16 90.5 59 81.4
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 9.9e-16 88.6 340 26.8
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 2.1e-13 80.9 59 72.9
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 6.7e-12 75.9 102 48.0
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 4.3e-11 73.2 114 36.0
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 4.0e-09 66.6 46 67.4


User provided reference genes

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