Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.2e-270 936.0 491 100.0
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 5.6e-217 757.7 519 80.9
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.7e-205 719.5 504 79.0
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 8.2e-176 620.9 521 69.1
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 1.3e-173 613.6 510 67.1
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 6.3e-152 541.6 390 79.7
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 2.9e-149 532.7 506 61.9
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.9e-149 532.7 391 78.5
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 9.8e-145 517.7 515 58.4
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 1.1e-143 514.2 508 60.0
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 5.9e-142 508.4 510 58.4
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 5.9e-142 508.4 514 58.0
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.0e-141 507.7 528 56.8
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 2.1e-139 500.0 506 59.1
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.0e-138 497.7 482 60.6
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 4.4e-137 492.3 503 57.5
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.7e-136 490.3 502 57.2
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 2.2e-136 490.0 428 66.1
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 8.3e-136 488.0 519 56.8
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.4e-135 487.3 515 58.6
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 9.2e-135 484.6 507 55.6
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 3.5e-134 482.6 508 56.9
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 5.6e-132 475.3 522 56.9
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.1e-130 471.1 509 57.2
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.1e-130 471.1 510 54.9
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.8e-130 470.3 511 55.4
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 3.1e-130 469.5 509 55.2
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 4.4e-129 465.7 504 53.8
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.7e-128 463.8 513 54.0
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 5.4e-127 458.8 509 54.2
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 2.1e-126 456.8 497 55.5
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 6.0e-126 455.3 442 58.1
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.3e-125 453.4 444 59.0
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 5.1e-125 452.2 550 52.7
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.1e-124 451.1 499 55.7
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 2.5e-124 449.9 403 61.0
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 7.3e-124 448.4 493 54.4
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.1e-123 446.8 527 53.7
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 3.6e-123 446.0 542 52.8
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 8.1e-123 444.9 497 54.7
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.8e-122 443.7 510 52.5
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 3.7e-120 436.0 539 49.5
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 2.4e-119 433.3 539 51.2
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 3.2e-119 433.0 456 53.5
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.2e-118 431.0 493 51.3
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 6.0e-118 428.7 495 52.3
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.7e-117 427.2 510 51.8
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.7e-117 427.2 504 50.6
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 3.3e-116 422.9 542 48.2
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 4.3e-116 422.5 504 51.8
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 5.6e-116 422.2 497 51.3
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 9.6e-116 421.4 404 59.7
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 3.6e-115 419.5 502 50.4
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 6.2e-115 418.7 516 51.9
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 8.1e-115 418.3 506 50.2
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 5.2e-114 415.6 482 51.2
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 3.4e-113 412.9 487 50.9
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 3.4e-113 412.9 446 55.4
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 9.9e-113 411.4 391 55.8
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 2.2e-112 410.2 380 59.2
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 2.9e-112 409.8 522 49.8
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 6.4e-112 408.7 546 47.3
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 8.4e-112 408.3 499 49.7
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.1e-111 407.9 481 50.7
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.4e-111 407.5 512 48.8
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 4.2e-111 406.0 500 50.0
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 9.3e-111 404.8 544 49.3
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 3.5e-110 402.9 339 60.2
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 4.6e-110 402.5 446 52.9
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 6.0e-110 402.1 445 53.7
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 1.0e-109 401.4 364 60.2
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.7e-109 400.6 455 53.0
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 3.0e-109 399.8 327 68.2
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.6e-109 398.7 464 50.2
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 8.7e-109 398.3 349 62.8
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.3e-107 394.4 353 58.6
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.4e-106 391.0 567 47.6
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 4.2e-103 379.4 322 64.0
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 4.2e-103 379.4 361 58.7
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 5.4e-103 379.0 439 50.8
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 1.0e-101 374.8 524 46.2
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.3e-101 374.4 427 49.2
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 5.6e-100 369.0 452 51.3
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 5.6e-100 369.0 411 50.6
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 9.6e-100 368.2 438 53.4
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 3.6e-99 366.3 546 43.8
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 4.0e-98 362.8 450 48.4
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 9.0e-98 361.7 486 48.4
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 1.9e-95 354.0 441 49.0
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.7e-93 345.1 350 57.7
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 9.6e-92 341.7 421 53.0
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.2e-83 312.0 276 60.1
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.4e-82 311.2 309 57.3
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.6e-81 307.0 335 50.7
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.2e-79 300.1 287 58.9
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 3.2e-79 300.1 435 44.6
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 9.3e-79 298.5 342 46.8
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.1e-78 297.4 304 58.6
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 6.7e-77 292.4 183 78.7
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.1e-76 291.6 402 47.5
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.5e-73 279.6 190 74.2
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.0e-72 278.5 269 55.4
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.2e-72 277.3 266 57.5
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.1e-63 248.4 257 52.5
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.1e-62 244.2 256 51.2
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.8e-61 241.1 247 55.9
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 3.0e-61 240.4 257 50.6
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 8.8e-61 238.8 257 49.4
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 4.4e-60 236.5 444 36.0
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 2.4e-58 230.7 181 65.2
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 2.4e-58 230.7 232 57.3
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 5.3e-58 229.6 187 62.6
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.3e-56 224.9 259 50.2
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-55 221.5 144 76.4
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 2.5e-55 220.7 257 47.5
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 3.2e-55 220.3 269 48.7
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 9.4e-55 218.8 269 48.7
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 9.4e-55 218.8 269 48.3
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 3.6e-54 216.9 148 75.0
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.7e-51 208.0 261 46.7
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.4e-50 204.9 164 64.0
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 5.9e-49 199.5 276 42.8
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.3e-48 198.4 163 62.6
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 1.7e-48 198.0 163 62.6
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.0e-45 188.7 277 45.8
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 4.4e-44 183.3 165 58.8
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.1e-42 178.7 179 52.0
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 1.7e-40 171.4 121 66.9
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 3.2e-39 167.2 169 52.7
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 1.5e-36 158.3 210 48.1
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 3.7e-35 153.7 233 37.8
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.4e-34 151.8 304 34.9
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 9.2e-34 149.1 184 50.5
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 3.3e-31 140.6 172 45.9
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 1.0e-29 135.6 145 53.8
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.4e-28 130.2 151 49.7
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.4e-28 130.2 114 62.3
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 7.5e-28 129.4 346 27.7
FAN12G3424 Fragaria x ananassa HOM05D053587 ORTHO05D005187 3.2e-26 124.0 133 58.6
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 5.6e-23 113.2 114 57.9
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.8e-22 110.9 113 57.5
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 8.9e-21 105.9 264 35.6
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 5.8e-20 103.2 87 67.8
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 9.8e-20 102.4 208 32.7
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 3.7e-19 100.5 209 32.5
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 8.3e-19 99.4 87 55.2
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 2.3e-16 91.3 180 32.2
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.3e-15 87.4 51 74.5
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 3.3e-15 87.4 45 80.0
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 9.5e-15 85.9 67 55.2
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.4e-13 82.0 41 97.6
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 5.2e-13 80.1 97 48.5
FAN27G1500 Fragaria x ananassa HOM05D000240 ORTHO05D025578 7.1e-10 69.7 143 39.9
FAN07G2826 Fragaria x ananassa HOM05D053587 ORTHO05D005187 2.1e-09 68.2 94 48.9
FAN04G3021 Fragaria x ananassa HOM05D004621 ORTHO05D025578 4.6e-09 67.0 143 36.4
FAN02G1466 Fragaria x ananassa HOM05D004621 ORTHO05D025578 7.8e-09 66.2 143 35.7
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 7.8e-09 66.2 174 30.5
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 5.1e-08 63.5 54 61.1
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 1.1e-07 62.4 41 78.0
FAN02G3252 Fragaria x ananassa HOM05D004621 ORTHO05D025578 1.9e-07 61.6 64 50.0
FAN07G1695 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.6e-06 58.5 89 43.8


User provided reference genes

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