Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0134251 Rosa chinensis HOM05D004058 ORTHO05D001984 3.5e-64 248.1 118 100.0
RcHm_v2.0_Chr3g0492251 Rosa chinensis HOM05D004058 ORTHO05D001984 1.9e-22 109.4 64 84.4
Hund05622 Selenicereus undatus HOM05D004058 ORTHO05D001984 4.3e-22 108.2 64 76.6
Aqoxy1G01544 Aquilegia oxysepala HOM05D004058 ORTHO05D001984 5.6e-22 107.8 64 81.2
MD03G1172100 Malus domestica HOM05D004058 ORTHO05D001984 5.6e-22 107.8 64 81.2
Potri.001G253200 Populus trichocarpa HOM05D004058 ORTHO05D001984 5.6e-22 107.8 64 78.1
CiPaw.14G117000 Carya illinoinensis HOM05D004058 ORTHO05D001984 7.3e-22 107.5 64 79.7
Prupe.4G254800 Prunus persica HOM05D004058 ORTHO05D001984 7.3e-22 107.5 64 81.2
Atru.chr3.2652 Acer truncatum HOM05D004058 ORTHO05D001984 9.6e-22 107.1 64 78.1
Atru.chr3.2657 Acer truncatum HOM05D004058 ORTHO05D001984 9.6e-22 107.1 64 78.1
Duzib128G0888 Durio zibethinus HOM05D004058 ORTHO05D001984 9.6e-22 107.1 64 76.6
Lsat_1_v5_gn_2_30141 Lactuca sativa HOM05D004058 ORTHO05D001984 9.6e-22 107.1 64 76.6
Manes.01G181600 Manihot esculenta HOM05D004058 ORTHO05D001984 9.6e-22 107.1 64 78.1
Manes.02G141300 Manihot esculenta HOM05D004058 ORTHO05D001984 9.6e-22 107.1 64 78.1
Potri.009G047500 Populus trichocarpa HOM05D004058 ORTHO05D001984 1.3e-21 106.7 64 76.6
PGR042G0506 Punica granatum HOM05D004058 ORTHO05D001984 1.3e-21 106.7 64 78.1
EL10Ac2g04072 Beta vulgaris HOM05D004058 ORTHO05D001984 1.6e-21 106.3 64 75.0
Dinv26740 Davidia involucrata HOM05D004058 ORTHO05D001984 1.6e-21 106.3 64 75.0
Psat1g189640 Pisum sativum HOM05D004058 ORTHO05D001984 1.6e-21 106.3 64 76.6
Aa31LG10G14760 Aethionema arabicum HOM05D004058 ORTHO05D001984 2.1e-21 105.9 64 75.0
AUR62018231 Chenopodium quinoa HOM05D004058 ORTHO05D001984 2.1e-21 105.9 64 76.6
AUR62037770 Chenopodium quinoa HOM05D004058 ORTHO05D001984 2.1e-21 105.9 64 76.6
PSO170G4824 Papaver somniferum HOM05D004058 ORTHO05D001984 2.1e-21 105.9 64 76.6
PSO782G1384 Papaver somniferum HOM05D004058 ORTHO05D001984 2.1e-21 105.9 64 76.6
TPR.G26240 Trifolium pratense HOM05D004058 ORTHO05D001984 2.1e-21 105.9 64 78.1
TWI34G0191 Tripterygium wilfordii HOM05D004058 ORTHO05D001984 2.1e-21 105.9 64 79.7
CsaV3_1G042970 Cucumis sativus L. HOM05D004058 ORTHO05D001984 2.8e-21 105.5 64 79.7
Dinv30994 Davidia involucrata HOM05D004058 ORTHO05D001984 2.8e-21 105.5 64 75.0
Dinv31109 Davidia involucrata HOM05D004058 ORTHO05D001984 2.8e-21 105.5 64 75.0
Medtr2g019210 Medicago truncatula HOM05D004058 ORTHO05D001984 2.8e-21 105.5 64 76.6
Sabra16G0154100 Salix brachista HOM05D004058 ORTHO05D001984 2.8e-21 105.5 64 75.0
TPR.G11279 Trifolium pratense HOM05D004058 ORTHO05D001984 2.8e-21 105.5 64 76.6
AL5G42770 Arabidopsis lyrata HOM05D004058 ORTHO05D001984 3.6e-21 105.1 64 75.0
Eucgr.H02323 Eucalyptus grandis HOM05D004058 ORTHO05D001984 3.6e-21 105.1 64 78.1
Gohir.A09G112400 Gossypium hirsutum HOM05D004058 ORTHO05D001984 3.6e-21 105.1 64 78.1
Medtr1g063090 Medicago truncatula HOM05D004058 ORTHO05D001984 3.6e-21 105.1 64 75.0
Thecc.05G214000 Theobroma cacao HOM05D004058 ORTHO05D001984 3.6e-21 105.1 64 75.0
Aa31LG10G14790 Aethionema arabicum HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 73.4
AT3G60500 Arabidopsis thaliana HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 73.4
Carub.0005s1343 Capsella rubella HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 73.4
CARHR154600 Cardamine hirsuta HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 73.4
CARHR170880 Cardamine hirsuta HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 73.4
Thhalv10005979m.g Eutrema salsugineum HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 73.4
FvH4_1g30010 Fragaria vesca HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 79.7
MD11G1189800 Malus domestica HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 81.2
Sp5g02720 Schrenkiella parvula HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 73.4
TWI32G1049 Tripterygium wilfordii HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 76.6
TAR626G0501 Trochodendron aralioides HOM05D004058 ORTHO05D001984 4.8e-21 104.8 64 76.6
Ciclev10015158m.g Citrus clementina HOM05D004058 ORTHO05D001984 6.2e-21 104.4 64 75.0
COL.COLO4_36456 Corchorus olitorius HOM05D004058 ORTHO05D001984 6.2e-21 104.4 64 76.6
FAN23G0329 Fragaria x ananassa HOM05D004058 ORTHO05D001984 6.2e-21 104.4 64 79.7
FAN28G1893 Fragaria x ananassa HOM05D004058 ORTHO05D001984 6.2e-21 104.4 64 79.7
Nn3g19030 Nelumbo nucifera HOM05D004058 ORTHO05D001984 6.2e-21 104.4 64 75.0
Nn5g30742 Nelumbo nucifera HOM05D004058 ORTHO05D001984 6.2e-21 104.4 64 75.0
Sc25g0003330 Simmondsia chinensis HOM05D004058 ORTHO05D001984 6.2e-21 104.4 64 75.0
ATR0752G201 Amborella trichopoda HOM05D004058 ORTHO05D001984 8.1e-21 104.0 64 76.6
arahy.Tifrunner.gnm1.ann1.1PFQ5M Arachis hypogaea HOM05D004058 ORTHO05D001984 8.1e-21 104.0 64 75.0
arahy.Tifrunner.gnm1.ann1.KJN3LK Arachis hypogaea HOM05D004058 ORTHO05D001984 8.1e-21 104.0 64 75.0
Ca_11510_v3 Cicer arietinum L. HOM05D004058 ORTHO05D001984 8.1e-21 104.0 64 75.0
Lj2A624T39 Lonicera japonica HOM05D004058 ORTHO05D001984 8.1e-21 104.0 64 73.4
CSS0013673 Camellia sinensis var. sinensis HOM05D004058 ORTHO05D001984 1.1e-20 103.6 64 73.4
CSS0027884 Camellia sinensis var. sinensis HOM05D004058 ORTHO05D001984 1.1e-20 103.6 64 73.4
CSS0032467 Camellia sinensis var. sinensis HOM05D004058 ORTHO05D001984 1.1e-20 103.6 64 73.4
DCAR_014859 Daucus carota HOM05D004058 ORTHO05D001984 1.1e-20 103.6 64 73.4
Lj1g0026625 Lotus japonicus HOM05D004058 ORTHO05D001984 1.1e-20 103.6 64 75.0
Rhsim13G0217800 Rhododendron simsii HOM05D004058 ORTHO05D001984 1.1e-20 103.6 64 73.4
Sed0026993 Sechium edule HOM05D004058 ORTHO05D001984 1.1e-20 103.6 64 76.6
AT3G12990 Arabidopsis thaliana HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 73.4
BcaB02g07413 Brassica carinata HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 73.4
BcaC07g42773 Brassica carinata HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 73.4
A09p52750 Brassica napus HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 73.4
C08p35490 Brassica napus HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 73.4
BolC8t51141H Brassica oleracea HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 73.4
BraA09t40705Z Brassica rapa HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 73.4
AUR62009329 Chenopodium quinoa HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 73.4
AUR62023015 Chenopodium quinoa HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 73.4
ClCG03G013080 Citrullus lanatus HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 78.1
MELO3C015172.2 Cucumis melo HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 78.1
Gohir.D09G109100 Gossypium hirsutum HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 75.0
Gorai.006G126700 Gossypium raimondii HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 75.0
HanXRQChr13g0401261 Helianthus annuus HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 71.9
HanXRQChr16g0518111 Helianthus annuus HOM05D004058 ORTHO05D001984 1.4e-20 103.2 64 71.9
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 1.4e-20 103.2 63 79.4
CANSAT11G2066 Cannabis sativa HOM05D004058 ORTHO05D001984 1.8e-20 102.8 64 78.1
Cpa.g.sc84.28 Carica papaya HOM05D004058 ORTHO05D001984 1.8e-20 102.8 64 76.6
FAN26G1822 Fragaria x ananassa HOM05D004058 ORTHO05D001984 1.8e-20 102.8 64 78.1
Hma1.2p1_0390F.1_g142540 Hydrangea macrophylla HOM05D004058 ORTHO05D001984 1.8e-20 102.8 64 75.0
Phvul.002G034700 Phaseolus vulgaris HOM05D004058 ORTHO05D001984 1.8e-20 102.8 64 75.0
QL01p004121 Quercus lobata HOM05D004058 ORTHO05D001984 1.8e-20 102.8 64 76.6
THA.LOC104811177 Tarenaya hassleriana HOM05D004058 ORTHO05D001984 1.8e-20 102.8 64 73.4
vmacro04129 Vaccinium macrocarpon HOM05D004058 ORTHO05D001984 1.8e-20 102.8 64 71.9
GSVIVG01034501001 Vitis vinifera HOM05D004058 ORTHO05D001984 1.8e-20 102.8 64 73.4
Cc04_g10640 Coffea canephora HOM05D004058 ORTHO05D001984 2.4e-20 102.4 64 75.0
DCAR_017843 Daucus carota HOM05D004058 ORTHO05D001984 2.4e-20 102.4 64 71.9
ECA233G1956 Erigeron canadensis HOM05D004058 ORTHO05D001984 2.4e-20 102.4 64 70.3
Duzib168G2218 Durio zibethinus HOM05D004058 ORTHO05D001984 3.1e-20 102.1 64 73.4
SGA_v2.0_scaffold42G16077 Striga asiatica HOM05D004058 ORTHO05D001984 3.1e-20 102.1 64 71.9
VMungo1215G2741 Vigna mungo HOM05D004058 ORTHO05D001984 3.1e-20 102.1 64 73.4
Actinidia11671 Actinidia chinensis HOM05D004058 ORTHO05D001984 4.0e-20 101.7 64 73.4
MSTRG.12460 Avicennia marina HOM05D004058 ORTHO05D001984 4.0e-20 101.7 64 70.3
MBI16_g20015_MAGBIO Magnolia biondii HOM05D004058 ORTHO05D000140 4.0e-20 101.7 64 75.0
Sed0014327 Sechium edule HOM05D004058 ORTHO05D001984 4.0e-20 101.7 64 75.0
HPP92_016108 Vanilla planifolia HOM05D004058 ORTHO05D001984 4.0e-20 101.7 64 75.0
CAN.G106.16 Capsicum annuum HOM05D004058 ORTHO05D001984 5.3e-20 101.3 64 73.4
Cfa009809 Carpinus fangiana HOM05D004058 ORTHO05D001984 5.3e-20 101.3 64 75.0
MSTRG.17604 Avicennia marina HOM05D004058 ORTHO05D001984 6.9e-20 100.9 64 71.9
BcaC08g45068 Brassica carinata HOM05D004058 ORTHO05D001984 6.9e-20 100.9 64 71.9
A07p25110 Brassica napus HOM05D004058 ORTHO05D001984 6.9e-20 100.9 64 71.9
C06p26770 Brassica napus HOM05D004058 ORTHO05D001984 6.9e-20 100.9 64 71.9
BolC6t37852H Brassica oleracea HOM05D004058 ORTHO05D001984 6.9e-20 100.9 64 71.9
BraA07t30153Z Brassica rapa HOM05D004058 ORTHO05D001984 6.9e-20 100.9 64 71.9
Haze_23173 Corylus avellana HOM05D004058 ORTHO05D001984 6.9e-20 100.9 64 73.4
Peaxi162Scf00004g03312 Petunia axillaris HOM05D004058 ORTHO05D001984 6.9e-20 100.9 64 71.9
Solyc05g047420.4 Solanum lycopersicum HOM05D004058 ORTHO05D001984 6.9e-20 100.9 64 71.9
Sopen05g027750 Solanum pennellii HOM05D004058 ORTHO05D001984 6.9e-20 100.9 64 71.9
FAN19G1259 Fragaria x ananassa HOM05D004058 ORTHO05D001984 9.0e-20 100.5 64 78.1
Gohir.A02G140600 Gossypium hirsutum HOM05D004058 ORTHO05D001984 9.0e-20 100.5 63 74.6
Gohir.D03G050900 Gossypium hirsutum HOM05D004058 ORTHO05D001984 9.0e-20 100.5 63 74.6
Gorai.003G052600 Gossypium raimondii HOM05D004058 ORTHO05D001984 9.0e-20 100.5 63 74.6
Lj1A320T15 Lonicera japonica HOM05D004058 ORTHO05D001984 9.0e-20 100.5 64 71.9
Oeu025886.1 Olea europaea HOM05D004058 ORTHO05D001984 9.0e-20 100.5 64 71.9
Migut.N02342 Erythranthe guttata HOM05D004058 ORTHO05D001984 1.2e-19 100.1 64 68.8
Lsat_1_v5_gn_6_25801 Lactuca sativa HOM05D004058 ORTHO05D001984 1.2e-19 100.1 64 71.9
SalBow8G3791 Salvia bowleyana HOM05D004058 ORTHO05D001984 1.2e-19 100.1 64 68.8
Glyma.01G227700 Glycine max HOM05D004058 ORTHO05D001984 1.5e-19 99.8 64 71.9
Rhsim01G0192500 Rhododendron simsii HOM05D004058 ORTHO05D001984 1.5e-19 99.8 64 73.4
COL.COLO4_37804 Corchorus olitorius HOM05D000623 ORTHO05D006801 2.0e-19 99.4 66 72.7
Glyma.11G015300 Glycine max HOM05D004058 ORTHO05D001984 2.0e-19 99.4 64 70.3
SMO364G0151 Selaginella moellendorffii HOM05D004058 ORTHO05D001984 2.0e-19 99.4 64 71.9
Thecc.09G238900 Theobroma cacao HOM05D004058 ORTHO05D001984 2.0e-19 99.4 64 71.9
CDE02G0539 Ceratophyllum demersum HOM05D004058 ORTHO05D001984 2.6e-19 99.0 64 70.3
Lalb_Chr09g0320451 Lupinus albus HOM05D004058 ORTHO05D001984 2.6e-19 99.0 64 67.2
Os02g0550700 Oryza sativa ssp. japonica HOM05D004058 ORTHO05D001984 2.6e-19 99.0 64 71.9
SEGI_37460 Sequoiadendron giganteum HOM05D004058 ORTHO05D001984 2.6e-19 99.0 64 67.2
unitig_27.g24998 Utricularia gibba HOM05D004058 ORTHO05D001984 2.6e-19 99.0 64 71.9
EL10Ac2g03220 Beta vulgaris HOM05D004058 ORTHO05D001984 3.4e-19 98.6 63 71.4
Mapoly0005s0264 Marchantia polymorpha HOM05D004058 ORTHO05D001984 3.4e-19 98.6 64 70.3
Nitab4.5_0002451g0010 Nicotiana tabacum HOM05D004058 ORTHO05D001984 3.4e-19 98.6 64 70.3
Nitab4.5_0006617g0020 Nicotiana tabacum HOM05D004058 ORTHO05D001984 3.4e-19 98.6 64 70.3
AagrBONN_evm.TU.Sc2ySwM_344.853 Anthoceros agrestis HOM05D004058 ORTHO05D001984 4.5e-19 98.2 64 68.8
Zm00001eb243400 Zea mays HOM05D004058 ORTHO05D001984 4.5e-19 98.2 64 73.4
Sabra09G0034800 Salix brachista HOM05D004058 ORTHO05D001984 5.8e-19 97.8 74 66.2
CANSAT78G0061 Cannabis sativa HOM05D004058 ORTHO05D001984 2.9e-18 95.5 74 64.9
Ciclev10023701m.g Citrus clementina HOM05D004058 ORTHO05D001984 2.9e-18 95.5 64 70.3
Pp3c15_10030 Physcomitrium patens HOM05D004058 ORTHO05D001984 4.9e-18 94.7 91 54.9
vmacro10778 Vaccinium macrocarpon HOM05D004058 ORTHO05D001984 1.1e-17 93.6 64 70.3
CBR_g8569 Chara braunii HOM05D004058 ORTHO05D001984 9.3e-17 90.5 64 60.9
Zm00001eb277640 Zea mays HOM05D004058 ORTHO05D001984 7.9e-16 87.4 59 71.2
Ah.16g105270 Amaranthus hybridus HOM05D004058 ORTHO05D001984 1.0e-15 87.0 97 47.4
Lju9295C0T0 Lonicera japonica HOM05D004058 ORTHO05D001984 1.5e-14 83.2 52 69.2
Cre03.g175000 Chlamydomonas reinhardtii HOM05D004058 ORTHO05D001984 1.1e-12 77.0 63 52.4
AL3G24710 Arabidopsis lyrata HOM05D004058 ORTHO05D001984 5.3e-12 74.7 51 68.6
MCO07G489 Micromonas commoda HOM05D004058 ORTHO05D001984 1.7e-10 69.7 63 49.2
CDE08G0930 Ceratophyllum demersum HOM05D004058 ORTHO05D001984 8.4e-10 67.4 39 71.8
Zm00001eb055780 Zea mays HOM05D004058 ORTHO05D001984 9.6e-06 53.9 34 64.7


User provided reference genes

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