Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 0.0e+00 1164.1 566 100.0
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 0.0e+00 1092.0 574 94.1
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 0.0e+00 1086.2 570 91.9
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 0.0e+00 1080.5 571 93.2
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 0.0e+00 1075.8 570 92.8
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 1.7e-302 1042.0 566 88.9
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 2.7e-300 1034.6 566 88.5
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 4.0e-299 1030.8 562 88.3
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 2.0e-298 1028.5 561 88.1
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 2.6e-298 1028.1 561 88.1
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 2.4e-296 1021.5 562 87.5
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 7.7e-295 1016.5 567 86.4
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.9e-293 1011.9 561 85.9
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 2.5e-293 1011.5 562 86.7
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 7.2e-293 1010.0 562 86.3
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 4.7e-292 1007.3 562 86.3
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 6.1e-292 1006.9 562 86.3
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.0e-291 1004.6 547 92.3
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 2.0e-290 1001.9 564 86.9
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.4e-290 1001.1 570 84.2
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 5.7e-290 1000.3 565 85.3
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.3e-289 999.2 556 84.5
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.6e-287 992.3 563 85.4
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 5.9e-287 990.3 551 85.3
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 5.0e-286 987.3 570 82.1
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.5e-285 984.9 556 89.9
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.2e-284 982.6 564 83.2
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.6e-284 982.2 562 84.2
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 2.1e-284 981.9 586 81.6
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 2.3e-283 978.4 562 82.7
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.7e-281 972.2 556 82.6
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 1.9e-280 968.8 551 82.8
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 9.2e-280 966.5 572 80.6
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 2.7e-279 964.9 566 81.3
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.0e-278 963.0 524 87.0
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 1.0e-278 963.0 540 84.1
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.7e-278 962.2 550 82.7
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 5.0e-278 960.7 562 81.5
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 1.9e-277 958.7 550 82.9
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.5e-277 958.4 562 81.5
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 5.6e-277 957.2 564 80.7
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 9.5e-277 956.4 563 81.0
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.8e-276 954.9 557 80.8
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 3.6e-276 954.5 563 80.5
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 8.0e-276 953.4 563 80.3
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 1.4e-275 952.6 566 79.5
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.8e-275 952.2 540 84.3
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 2.3e-275 951.8 556 80.9
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 4.0e-275 951.0 560 82.0
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 5.2e-275 950.7 550 80.9
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.5e-274 949.1 564 81.0
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 4.4e-274 947.6 561 80.6
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 7.5e-274 946.8 550 80.9
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 7.5e-274 946.8 550 80.9
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 1.7e-273 945.7 572 78.7
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 2.9e-273 944.9 563 79.8
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 3.7e-273 944.5 550 80.7
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 8.3e-273 943.3 547 81.0
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 1.1e-272 943.0 557 80.8
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 4.1e-272 941.0 550 79.6
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 7.1e-272 940.3 549 82.5
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 1.2e-271 939.5 559 79.2
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 1.6e-271 939.1 545 81.8
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 1.9e-269 932.2 557 78.6
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 5.6e-269 930.6 547 80.1
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 1.6e-268 929.1 558 79.0
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 4.7e-268 927.5 551 79.3
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 6.8e-267 923.7 587 78.7
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.0e-266 922.2 550 78.7
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.6e-266 921.8 532 80.6
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.6e-266 921.8 538 81.8
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 4.4e-266 921.0 545 78.3
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.7e-265 919.1 582 78.7
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.2e-265 918.7 532 80.1
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.2e-265 918.7 549 78.0
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.2e-265 918.7 549 78.5
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 6.4e-265 917.1 540 79.8
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 8.3e-265 916.8 560 77.9
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 1.1e-264 916.4 533 82.6
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.9e-264 915.6 569 77.7
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 5.4e-264 914.1 532 79.9
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 9.2e-264 913.3 562 77.6
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 9.2e-264 913.3 543 78.3
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 2.7e-263 911.8 517 82.8
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 3.5e-263 911.4 543 78.3
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 7.8e-263 910.2 550 78.2
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 7.8e-263 910.2 551 78.0
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 1.7e-262 909.1 540 80.4
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 3.0e-262 908.3 555 78.7
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 6.6e-262 907.1 560 76.2
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 1.1e-261 906.4 557 76.7
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.2e-258 896.3 546 77.3
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 2.0e-258 895.6 535 78.5
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 9.9e-258 893.3 551 76.2
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 1.3e-257 892.9 550 77.1
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 1.3e-257 892.9 550 77.3
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 1.3e-257 892.9 550 77.1
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.3e-257 892.9 543 77.9
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 3.8e-257 891.3 552 76.8
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 3.8e-257 891.3 552 76.8
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 6.4e-257 890.6 552 76.6
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 8.4e-257 890.2 560 75.5
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 3.2e-256 888.3 552 76.8
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 7.1e-256 887.1 566 75.1
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 6.0e-255 884.0 535 75.3
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 1.3e-254 882.9 535 78.1
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.3e-254 882.9 548 77.2
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 9.6e-253 876.7 563 75.8
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 6.2e-252 874.0 509 81.9
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 9.0e-251 870.2 539 77.7
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 1.3e-249 866.3 557 74.3
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.2e-247 859.8 518 78.8
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 6.0e-247 857.4 544 75.4
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 3.1e-243 845.1 495 81.8
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 8.4e-241 837.0 556 73.9
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.4e-240 835.5 545 73.4
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 5.1e-238 827.8 517 76.2
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 2.1e-236 822.4 517 78.3
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 3.7e-236 821.6 553 72.5
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 9.3e-232 807.0 532 73.5
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.2e-225 785.8 569 68.9
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 7.9e-223 777.3 566 67.1
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.0e-217 760.4 546 68.7
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.8e-212 741.5 495 72.7
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.6e-202 709.1 578 61.8
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 6.5e-201 704.5 564 62.6
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 3.2e-200 702.2 416 81.7
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 2.7e-199 699.1 561 62.9
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 6.3e-196 688.0 543 63.9
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 4.6e-154 548.9 340 78.8
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.8e-140 502.7 278 84.2
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.4e-139 500.7 304 78.6
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 3.6e-135 486.1 263 91.6
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 7.6e-133 478.4 355 66.8
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 7.6e-125 451.8 566 48.2
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 2.3e-121 440.3 317 69.1
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 8.4e-116 421.8 294 71.4
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.5e-107 392.5 217 78.3
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.2e-101 374.8 217 82.9
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 2.1e-98 364.0 308 58.8
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 6.3e-95 352.4 279 63.1
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.9e-84 317.0 247 65.6
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 4.8e-79 299.7 573 33.9
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 1.2e-77 295.0 198 73.2
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.6e-72 277.3 201 67.2
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.1e-66 257.7 145 77.9
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 1.6e-61 241.5 458 31.4
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 8.3e-55 219.2 228 48.2
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 8.0e-50 202.6 133 74.4
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 1.8e-33 148.3 107 66.4
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.0e-32 144.8 128 53.9
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.6e-32 144.4 106 63.2
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.8e-32 143.3 111 62.2
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 1.7e-31 141.7 100 67.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.2e-26 125.6 150 48.0
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.9e-22 111.7 54 87.0
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 5.1e-20 103.6 127 45.7
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.2e-16 92.4 56 71.4
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 1.3e-15 89.0 54 72.2
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 6.2e-10 70.1 43 79.1
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 1.1e-06 59.3 65 35.4
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 1.4e-06 58.9 70 35.7
Gohir.A04G051300 Gossypium hirsutum HOM05D000341 ORTHO05D001197 1.9e-06 58.5 97 36.1
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 4.2e-06 57.4 62 38.7
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 4.2e-06 57.4 56 37.5
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 5.5e-06 57.0 55 43.6
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 5.5e-06 57.0 55 43.6
FvH4_6g11150 Fragaria vesca HOM05D009507 ORTHO05D022560 7.1e-06 56.6 77 29.9
FAN14G0535 Fragaria x ananassa HOM05D009507 ORTHO05D022560 7.1e-06 56.6 77 29.9
unitig_748.g7202 Utricularia gibba HOM05D000086 ORTHO05D001065 7.1e-06 56.6 117 35.0
Cpa.g.sc17.216 Carica papaya HOM05D000082 ORTHO05D000038 9.3e-06 56.2 161 26.1
FvH4_1g03372 Fragaria vesca HOM05D012452 ORTHO05D017950 9.3e-06 56.2 55 43.6
FAN23G2234 Fragaria x ananassa HOM05D012452 ORTHO05D017950 9.3e-06 56.2 55 43.6
FAN28G2875 Fragaria x ananassa HOM05D012452 ORTHO05D017950 9.3e-06 56.2 55 43.6
Prupe.6G077000 Prunus persica HOM05D000086 ORTHO05D010990 9.3e-06 56.2 65 36.9
Sc04g0001090 Simmondsia chinensis HOM05D000082 ORTHO05D000038 9.3e-06 56.2 61 39.3
Sopen03g041460 Solanum pennellii HOM05D000086 ORTHO05D008998 9.3e-06 56.2 71 36.6


User provided reference genes

Program Settings