Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 2973.3 1513 100.0
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 2684.4 1505 89.4
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 2665.6 1523 88.2
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 2514.6 1509 84.7
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 2277.7 1515 75.0
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 2269.6 1515 75.6
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 2021.1 1513 67.5
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1965.7 1517 65.4
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1934.1 1558 64.9
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1929.5 1514 65.3
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1927.1 1517 65.6
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1889.8 1517 63.7
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1855.1 1517 62.4
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1849.3 1517 61.4
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1845.5 1524 61.7
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1802.7 1459 62.9
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1799.6 1537 60.5
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1797.7 1518 61.3
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1793.5 1545 61.0
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1776.5 1525 60.3
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1773.8 1518 60.7
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1773.1 1520 60.7
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1771.5 1518 61.1
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1749.6 1517 60.3
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1748.8 1628 56.8
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1744.6 1518 60.3
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1744.6 1515 59.5
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1739.2 1517 59.7
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1731.8 1517 59.3
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1729.1 1516 59.5
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1723.0 1517 59.7
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1703.0 1523 56.9
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1699.1 1516 58.8
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1689.5 1533 57.8
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1689.5 1533 57.8
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1686.4 1525 56.9
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1682.9 1198 70.7
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1680.6 1519 58.7
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1668.7 1520 56.0
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1662.5 1434 60.3
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1660.6 1519 56.6
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1657.1 1522 56.6
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1655.6 1526 57.4
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1652.1 1531 57.2
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1624.8 1513 55.3
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1619.8 1288 63.4
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1616.3 1519 56.4
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1613.6 1518 55.1
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1611.7 1518 56.5
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1610.5 1515 54.3
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1605.9 1546 54.7
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1583.5 1517 56.4
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1575.1 1521 55.3
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1564.3 1524 54.6
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1557.0 1516 54.3
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1554.7 1509 53.5
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1549.3 1520 54.2
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1548.1 1518 53.9
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1541.9 1121 71.0
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1530.4 1534 51.8
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1512.3 1545 51.7
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1511.1 1518 53.7
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1507.3 1238 62.3
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1468.4 1527 52.3
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1463.7 1525 52.7
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1458.4 1527 52.5
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1448.0 1528 52.4
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1436.4 1469 51.5
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1432.5 1523 51.4
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1432.2 1527 51.7
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1425.6 1569 50.7
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1413.7 1526 51.1
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1413.7 1514 49.5
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1405.2 1464 51.7
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1399.4 1469 51.9
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1398.3 1467 51.6
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1392.1 1496 51.1
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1384.4 1496 50.6
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1384.4 1527 50.1
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1383.2 1770 44.0
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1373.6 1523 50.2
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1357.8 1520 47.6
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1342.8 1157 60.1
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1329.7 1408 51.6
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1321.2 1053 63.7
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1306.2 1295 54.2
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1296.6 1552 46.5
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1296.2 1572 46.6
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1281.9 1133 57.9
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1280.0 1102 59.3
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1204.5 1528 44.6
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1129.4 987 58.7
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.9e-272 943.0 1148 45.1
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 3.3e-252 876.3 1556 36.2
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 9.4e-247 858.2 1162 42.1
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 4.2e-231 806.2 1039 44.5
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 8.3e-227 792.0 599 66.8
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.6e-225 787.7 1555 34.5
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 2.7e-225 786.9 1558 33.5
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 4.9e-219 766.1 571 66.7
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.7e-216 757.7 995 43.9
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 4.7e-214 749.6 631 60.9
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.3e-213 747.3 599 63.1
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.8e-206 723.8 618 60.5
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 7.6e-204 715.7 561 64.0
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.2e-201 708.4 969 44.0
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 3.9e-200 703.4 1002 43.0
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 3.3e-199 700.3 1004 42.9
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 4.9e-195 686.4 1400 33.5
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 3.4e-180 637.1 482 69.1
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 4.1e-149 533.9 575 51.3
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.5e-130 472.2 565 45.7
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.0e-123 449.5 576 45.1
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 7.5e-119 433.3 527 46.7
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 4.0e-112 411.0 420 56.2
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 2.0e-111 408.7 370 57.3
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.4e-109 402.5 211 91.0
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 3.6e-105 387.9 506 44.3
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-105 387.9 988 29.0
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 3.1e-104 384.8 455 50.1
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 2.7e-92 345.1 303 59.1
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.7e-92 345.1 327 53.5
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 3.5e-92 344.7 452 43.6
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 6.0e-84 317.4 254 65.7
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.3e-83 316.2 551 36.7
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 4.2e-77 294.7 327 48.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 7.3e-74 283.9 805 28.9
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 9.6e-74 283.5 387 42.1
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 2.8e-73 282.0 284 54.2
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 8.1e-73 280.4 373 42.4
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.6e-68 266.2 343 43.4
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 5.6e-66 257.7 283 50.5
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 9.0e-64 250.4 317 42.9
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.8e-59 236.1 195 64.1
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.9e-58 232.6 479 33.0
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 2.4e-56 225.7 183 63.4
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.0e-55 222.6 289 45.7
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 7.6e-55 220.7 198 54.5
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 4.8e-49 201.4 256 46.1
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 6.3e-49 201.1 230 49.1
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.3e-46 193.4 199 53.8
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 5.0e-46 191.4 195 53.8
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.1e-45 190.3 131 66.4
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 6.1e-44 184.5 123 69.9
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.3e-42 178.7 306 35.0
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 8.2e-41 174.1 146 58.2
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.1e-40 173.7 129 65.9
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 2.0e-39 169.5 391 35.8
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 3.3e-34 152.1 117 58.1
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 7.4e-34 151.0 117 61.5
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 2.0e-31 142.9 96 75.0
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-30 140.6 96 74.0
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 7.9e-28 131.0 204 43.1
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 8.2e-25 120.9 117 56.4
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 4.2e-21 108.6 106 53.8
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 9.1e-16 90.9 251 25.9
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 1.6e-12 80.1 272 25.7
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.4e-10 72.4 61 54.1
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 2.2e-09 69.7 68 51.5
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 4.8e-09 68.6 195 29.2
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 7.0e-08 64.7 47 66.0
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 1.6e-07 63.5 72 52.8
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.9e-06 59.3 38 71.1


User provided reference genes

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