Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0124991 Rosa chinensis HOM05D003624 ORTHO05D004188 6.9e-36 153.3 70 100.0
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 3.2e-33 144.4 67 95.5
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 9.3e-33 142.9 67 94.0
CDE07G1603 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 9.3e-33 142.9 67 94.0
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 1.2e-32 142.5 67 92.5
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 1.2e-32 142.5 67 94.0
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 1.6e-32 142.1 67 91.0
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 1.6e-32 142.1 67 92.5
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 1.6e-32 142.1 67 91.0
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 1.6e-32 142.1 67 92.5
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 2.1e-32 141.7 67 94.0
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 2.7e-32 141.4 67 94.0
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 2.7e-32 141.4 67 92.5
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 2.7e-32 141.4 67 92.5
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 92.5
MD01G1133500 Malus domestica HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 3.6e-32 141.0 67 94.0
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 92.5
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 92.5
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 92.5
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 89.6
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 89.6
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 92.5
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 92.5
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 92.5
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 89.6
Dinv02280 Davidia involucrata HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 91.0
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 91.0
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 91.0
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 92.5
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 91.0
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 91.0
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 91.0
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 92.5
GSVIVG01008269001 Vitis vinifera HOM05D003624 ORTHO05D004188 4.6e-32 140.6 67 89.6
Actinidia02952 Actinidia chinensis HOM05D003624 ORTHO05D004188 6.1e-32 140.2 67 91.0
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 6.1e-32 140.2 67 91.0
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 6.1e-32 140.2 67 91.0
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 6.1e-32 140.2 67 92.5
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 89.6
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 89.6
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 88.1
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 89.6
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 89.6
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
Ca_20539_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
RcHm_v2.0_Chr4g0406621 Rosa chinensis HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 7.9e-32 139.8 67 91.0
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 1.0e-31 139.4 67 91.0
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 91.0
Duzib106G1275 Durio zibethinus HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 91.0
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 91.0
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 91.0
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 91.0
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 89.6
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 91.0
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 91.0
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 88.1
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 88.1
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 91.0
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 89.6
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 89.6
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 89.6
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 1.4e-31 139.0 67 91.0
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 1.8e-31 138.7 67 89.6
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 1.8e-31 138.7 67 88.1
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 1.8e-31 138.7 67 88.1
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 1.8e-31 138.7 67 88.1
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 1.8e-31 138.7 67 89.6
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 1.8e-31 138.7 67 92.5
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 1.8e-31 138.7 67 89.6
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 1.8e-31 138.7 67 89.6
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 1.8e-31 138.7 67 88.1
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 1.8e-31 138.7 67 88.1
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 2.3e-31 138.3 67 88.1
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 2.3e-31 138.3 67 88.1
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 2.3e-31 138.3 67 88.1
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 2.3e-31 138.3 67 88.1
Nitab4.5_0000578g0060 Nicotiana tabacum HOM05D003624 ORTHO05D004188 2.3e-31 138.3 67 91.0
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 2.3e-31 138.3 67 89.6
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 2.3e-31 138.3 67 91.0
LjContig00310g0027848 Lotus japonicus HOM05D003624 ORTHO05D004188 3.0e-31 137.9 67 88.1
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 3.9e-31 137.5 67 91.0
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 3.9e-31 137.5 67 86.6
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 3.9e-31 137.5 67 86.6
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 3.9e-31 137.5 67 86.6
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 3.9e-31 137.5 67 86.6
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 3.9e-31 137.5 67 89.6
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 3.9e-31 137.5 67 89.6
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 3.9e-31 137.5 67 89.6
unitig_26.g9714 Utricularia gibba HOM05D001237 ORTHO05D001827 3.9e-31 137.5 67 91.0
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 5.1e-31 137.1 67 86.6
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 5.1e-31 137.1 67 88.1
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 5.1e-31 137.1 67 88.1
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 6.7e-31 136.7 67 86.6
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 8.8e-31 136.3 66 89.4
CBR_g4138 Chara braunii HOM05D003624 ORTHO05D004188 1.9e-30 135.2 66 87.9
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 2.5e-30 134.8 67 86.6
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 3.3e-30 134.4 67 86.6
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 3.3e-30 134.4 67 85.1
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 3.3e-30 134.4 67 85.1
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 3.3e-30 134.4 67 85.1
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 3.3e-30 134.4 67 85.1
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 3.3e-30 134.4 67 85.1
SEGI_37535 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 3.3e-30 134.4 67 86.6
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 7.4e-30 133.3 67 82.1
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 7.4e-30 133.3 67 86.6
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 7.4e-30 133.3 67 86.6
arahy.Tifrunner.gnm1.ann1.Y1WZEQ Arachis hypogaea HOM05D003624 ORTHO05D004188 9.7e-30 132.9 67 86.6
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 1.8e-28 128.6 82 73.2
COL.COLO4_15032 Corchorus olitorius HOM05D003624 ORTHO05D004188 4.1e-28 127.5 65 89.2
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 3.4e-27 124.4 65 81.5
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 3.4e-27 124.4 65 81.5
CARHR218920 Cardamine hirsuta HOM05D003624 ORTHO05D004188 5.9e-27 123.6 67 77.6
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 2.9e-26 121.3 67 80.6
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 1.4e-25 119.0 67 77.6
Carub.0001s4393 Capsella rubella HOM05D003624 ORTHO05D004188 1.9e-25 118.6 67 80.6
Prupe.4G141400 Prunus persica HOM05D003624 ORTHO05D004188 1.4e-23 112.5 50 98.0
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 6.5e-18 93.6 58 69.0
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 9.4e-17 89.7 57 63.2
Cfa024674 Carpinus fangiana HOM05D003624 ORTHO05D004188 1.6e-16 89.0 65 58.5
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 2.1e-16 88.6 61 62.3
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 1.0e-15 86.3 51 68.6
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 5.2e-15 84.0 64 60.9
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 2.0e-14 82.0 66 51.5
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 9.7e-14 79.7 38 86.8
Aqoxy2G00783 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 5.7e-06 53.9 36 61.1
Aqoxy4G02472 Aquilegia oxysepala HOM05D003624 ORTHO05D077376 9.7e-06 53.1 29 69.0


User provided reference genes

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