Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 2.3e-119 432.2 210 100.0
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 5.9e-99 364.4 210 86.7
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 5.2e-63 245.0 179 73.7
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 5.8e-62 241.5 179 71.5
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 5.8e-62 241.5 179 71.5
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 5.8e-62 241.5 179 72.6
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.2e-61 239.6 179 70.9
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 1.4e-47 193.7 179 58.7
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 1.8e-47 193.4 181 58.6
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 9.0e-47 191.0 181 58.0
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 9.0e-47 191.0 181 58.0
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 1.5e-46 190.3 179 58.1
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 4.5e-46 188.7 195 54.9
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 2.9e-45 186.0 180 58.3
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 2.9e-45 186.0 179 57.5
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 8.4e-45 184.5 180 57.2
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 2.4e-44 183.0 180 56.7
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 2.4e-44 183.0 179 55.9
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 4.2e-44 182.2 179 57.0
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 2.1e-43 179.9 178 55.6
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 2.1e-43 179.9 179 54.7
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 2.7e-43 179.5 177 57.1
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 3.5e-43 179.1 196 53.6
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 3.5e-43 179.1 175 57.1
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 3.5e-43 179.1 178 57.3
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 4.6e-43 178.7 176 56.8
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 6.0e-43 178.3 179 55.3
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 7.9e-43 177.9 178 56.2
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 7.9e-43 177.9 180 55.6
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 1.8e-42 176.8 177 55.9
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 2.3e-42 176.4 177 54.8
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 3.0e-42 176.0 177 57.6
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 3.9e-42 175.6 178 54.5
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 5.1e-42 175.3 182 52.7
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 1.1e-41 174.1 177 55.9
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 1.5e-41 173.7 179 53.1
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 1.9e-41 173.3 184 52.7
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 1.9e-41 173.3 177 55.9
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 2.5e-41 172.9 179 54.2
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 2.5e-41 172.9 178 53.4
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 3.3e-41 172.6 180 55.0
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 3.3e-41 172.6 178 55.1
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 3.3e-41 172.6 185 52.4
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 4.3e-41 172.2 178 53.9
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 7.4e-41 171.4 178 53.4
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 9.6e-41 171.0 178 52.8
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 1.3e-40 170.6 178 53.9
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.6e-40 170.2 183 53.0
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 2.1e-40 169.9 177 53.1
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 2.1e-40 169.9 180 53.9
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 2.1e-40 169.9 185 51.9
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 2.1e-40 169.9 175 55.4
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 2.8e-40 169.5 177 52.0
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 3.7e-40 169.1 177 55.4
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 6.2e-40 168.3 177 53.1
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 8.1e-40 167.9 182 50.0
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 2.4e-39 166.4 180 53.9
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 3.1e-39 166.0 179 53.6
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 4.0e-39 165.6 177 53.1
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 4.0e-39 165.6 182 51.1
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 6.9e-39 164.9 177 53.1
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 6.9e-39 164.9 178 53.4
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 1.2e-38 164.1 179 52.5
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 1.2e-38 164.1 180 53.3
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 1.5e-38 163.7 178 53.9
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 2.0e-38 163.3 178 54.5
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 3.4e-38 162.5 180 52.2
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 3.4e-38 162.5 178 51.7
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 4.5e-38 162.2 181 52.5
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 7.6e-38 161.4 179 53.1
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.0e-37 161.0 176 50.6
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 1.3e-37 160.6 177 52.5
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 1.3e-37 160.6 179 51.4
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 1.7e-37 160.2 179 51.4
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 2.2e-37 159.8 184 52.2
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 2.9e-37 159.5 190 48.9
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 2.9e-37 159.5 177 52.5
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 2.9e-37 159.5 177 53.1
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 2.9e-37 159.5 179 50.8
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 3.8e-37 159.1 177 53.1
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 6.5e-37 158.3 189 49.7
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 1.4e-36 157.1 179 50.8
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 1.4e-36 157.1 186 52.2
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 1.4e-36 157.1 178 50.6
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 1.9e-36 156.8 177 50.8
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.9e-36 156.8 177 48.6
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 3.2e-36 156.0 179 50.3
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 4.2e-36 155.6 179 51.4
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 7.1e-36 154.8 178 50.0
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 9.3e-36 154.5 177 48.6
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 3.5e-35 152.5 181 48.6
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 3.5e-35 152.5 179 49.2
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 3.5e-35 152.5 179 49.2
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 3.5e-35 152.5 181 48.6
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 6.0e-35 151.8 179 48.6
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 3.0e-34 149.4 208 44.7
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 3.0e-34 149.4 180 49.4
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 5.1e-34 148.7 172 48.3
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 8.7e-34 147.9 177 49.2
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 1.1e-33 147.5 177 48.0
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 1.1e-33 147.5 177 46.9
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 9.6e-33 144.4 182 47.8
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 2.8e-32 142.9 182 47.3
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.3e-24 117.5 177 37.9
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 2.8e-24 116.3 176 38.6
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 8.5e-21 104.8 122 46.7
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 3.2e-20 102.8 81 63.0
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 9.4e-20 101.3 178 35.4
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 6.1e-19 98.6 84 57.1
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 1.0e-18 97.8 79 62.0
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 3.0e-18 96.3 86 51.2
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 5.1e-18 95.5 81 55.6
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 6.7e-18 95.1 81 55.6
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 6.7e-18 95.1 81 55.6
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 8.8e-18 94.7 64 76.6
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 1.1e-17 94.4 80 58.8
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 2.5e-17 93.2 80 57.5
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 4.3e-17 92.4 79 54.4
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 4.3e-17 92.4 64 71.9
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 5.7e-17 92.0 81 55.6
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 5.7e-17 92.0 81 55.6
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 5.7e-17 92.0 79 58.2
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.3e-16 90.9 78 59.0
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 2.2e-16 90.1 79 55.7
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 4.8e-16 89.0 79 54.4
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 4.2e-12 75.9 60 56.7
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 5.5e-12 75.5 47 80.9
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 2.1e-11 73.6 60 55.0
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.5e-06 57.4 52 59.6


User provided reference genes

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