Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0120511 Rosa chinensis HOM05D002513 ORTHO05D002720 3.5e-49 198.0 99 100.0
RcHm_v2.0_Chr5g0053801 Rosa chinensis HOM05D002513 ORTHO05D002720 1.4e-13 79.7 43 90.7
AUR62018445 Chenopodium quinoa HOM05D002513 ORTHO05D002720 6.4e-11 70.9 39 87.2
AUR62020988 Chenopodium quinoa HOM05D002513 ORTHO05D002720 6.4e-11 70.9 39 87.2
Haze_07948 Corylus avellana HOM05D002513 ORTHO05D002720 2.4e-10 68.9 45 73.3
Sabra01G0134900 Salix brachista HOM05D002513 ORTHO05D002720 3.2e-10 68.6 45 75.6
RcHm_v2.0_Chr7g0203801 Rosa chinensis HOM05D002513 ORTHO05D002720 9.2e-10 67.0 40 80.0
Nitab4.5_0004277g0010 Nicotiana tabacum HOM05D002513 ORTHO05D002720 1.6e-09 66.2 41 82.9
Ah.13g077420 Amaranthus hybridus HOM05D002513 ORTHO05D002720 2.1e-09 65.9 35 85.7
Actinidia14412 Actinidia chinensis HOM05D002513 ORTHO05D002720 3.5e-09 65.1 68 54.4
TAR629G3140 Trochodendron aralioides HOM05D002513 ORTHO05D002720 3.5e-09 65.1 33 90.9
Prupe.5G066400 Prunus persica HOM05D002513 ORTHO05D002720 7.8e-09 63.9 33 90.9
Dinv21651 Davidia involucrata HOM05D002513 ORTHO05D002720 1.0e-08 63.5 33 90.9
GSVIVG01006271001 Vitis vinifera HOM05D002513 ORTHO05D002720 1.0e-08 63.5 33 90.9
EL10Ac3g07351 Beta vulgaris HOM05D002513 ORTHO05D002720 1.3e-08 63.2 33 90.9
FAN08G2557 Fragaria x ananassa HOM05D002513 ORTHO05D002720 1.3e-08 63.2 33 87.9
FAN13G1831 Fragaria x ananassa HOM05D002513 ORTHO05D002720 1.3e-08 63.2 33 87.9
FAN18G4043 Fragaria x ananassa HOM05D002513 ORTHO05D002720 1.3e-08 63.2 33 87.9
Actinidia02147 Actinidia chinensis HOM05D002513 ORTHO05D002720 1.7e-08 62.8 36 83.3
TAR636G3267 Trochodendron aralioides HOM05D002513 ORTHO05D002720 1.7e-08 62.8 33 87.9
vmacro00186 Vaccinium macrocarpon HOM05D002513 ORTHO05D002720 1.7e-08 62.8 36 83.3
Cpa.g.sc53.64 Carica papaya HOM05D002513 ORTHO05D002720 2.3e-08 62.4 33 87.9
Ciclev10018818m.g Citrus clementina HOM05D002513 ORTHO05D002720 3.0e-08 62.0 33 87.9
FAN04G1005 Fragaria x ananassa HOM05D002513 ORTHO05D002720 3.0e-08 62.0 33 87.9
Manes.01G082800 Manihot esculenta HOM05D002513 ORTHO05D002720 3.0e-08 62.0 33 87.9
PGR042G3434 Punica granatum HOM05D002513 ORTHO05D002720 3.0e-08 62.0 33 87.9
TWI81G0262 Tripterygium wilfordii HOM05D002513 ORTHO05D002720 3.0e-08 62.0 33 87.9
Rhsim11G0000900 Rhododendron simsii HOM05D002513 ORTHO05D002720 3.9e-08 61.6 45 71.1
SHI07796 Sapria himalayana HOM05D002513 ORTHO05D002720 3.9e-08 61.6 40 70.0
MD06G1055600 Malus domestica HOM05D002513 ORTHO05D002720 5.1e-08 61.2 33 87.9
Hund14574 Selenicereus undatus HOM05D002513 ORTHO05D002720 5.1e-08 61.2 33 87.9
CAN.G841.7 Capsicum annuum HOM05D002513 ORTHO05D002720 6.6e-08 60.8 30 96.7
ClCG10G002560 Citrullus lanatus HOM05D002513 ORTHO05D002720 6.6e-08 60.8 33 84.8
MELO3C013928.2 Cucumis melo HOM05D002513 ORTHO05D002720 6.6e-08 60.8 33 84.8
CsaV3_3G002590 Cucumis sativus L. HOM05D002513 ORTHO05D002720 6.6e-08 60.8 33 84.8
Nitab4.5_0006555g0030 Nicotiana tabacum HOM05D002513 ORTHO05D002720 6.6e-08 60.8 30 96.7
Peaxi162Scf01662g00119 Petunia axillaris HOM05D002513 ORTHO05D002720 6.6e-08 60.8 30 96.7
Potri.003G078800 Populus trichocarpa HOM05D002513 ORTHO05D002720 6.6e-08 60.8 33 84.8
Sabra03G0048900 Salix brachista HOM05D002513 ORTHO05D002720 6.6e-08 60.8 33 84.8
Solyc10g083150.3 Solanum lycopersicum HOM05D002513 ORTHO05D002720 6.6e-08 60.8 30 96.7
Sopen10g032620 Solanum pennellii HOM05D002513 ORTHO05D002720 6.6e-08 60.8 30 96.7
Lj4g0017155 Lotus japonicus HOM05D002513 ORTHO05D002720 8.6e-08 60.5 41 68.3
THA.LOC104814469 Tarenaya hassleriana HOM05D002513 ORTHO05D002720 8.6e-08 60.5 33 84.8
Atru.chr9.1284 Acer truncatum HOM05D002513 ORTHO05D002720 1.1e-07 60.1 30 93.3
TPR.G20363 Trifolium pratense HOM05D002513 ORTHO05D002720 1.1e-07 60.1 30 93.3
arahy.Tifrunner.gnm1.ann1.V507XA Arachis hypogaea HOM05D002513 ORTHO05D002720 1.5e-07 59.7 30 93.3
Eucgr.E00408 Eucalyptus grandis HOM05D002513 ORTHO05D002720 1.5e-07 59.7 33 84.8
MD04G1061900 Malus domestica HOM05D002513 ORTHO05D002720 1.5e-07 59.7 33 84.8
TAR633G0646 Trochodendron aralioides HOM05D002513 ORTHO05D002720 1.5e-07 59.7 29 93.1
TAR636G2655 Trochodendron aralioides HOM05D002513 ORTHO05D002720 1.5e-07 59.7 29 93.1
CSS0000182 Camellia sinensis var. sinensis HOM05D002513 ORTHO05D002720 1.9e-07 59.3 36 80.6
CANSAT21G1233 Cannabis sativa HOM05D002513 ORTHO05D002720 1.9e-07 59.3 31 87.1
Hma1.2p1_0316F.1_g122910 Hydrangea macrophylla HOM05D002513 ORTHO05D002720 1.9e-07 59.3 30 93.3
Hma1.2p1_0316F.1_g122915 Hydrangea macrophylla HOM05D002513 ORTHO05D002720 1.9e-07 59.3 30 93.3
Oeu002328.2 Olea europaea HOM05D002513 ORTHO05D002720 1.9e-07 59.3 36 77.8
Oeu022895.1 Olea europaea HOM05D002513 ORTHO05D002720 1.9e-07 59.3 30 93.3
THA.LOC104798367 Tarenaya hassleriana HOM05D002513 ORTHO05D002720 1.9e-07 59.3 68 50.0
TPR.G24353 Trifolium pratense HOM05D002513 ORTHO05D002720 1.9e-07 59.3 30 90.0
HPP92_004365 Vanilla planifolia HOM05D002513 ORTHO05D002720 1.9e-07 59.3 33 81.8
HPP92_004367 Vanilla planifolia HOM05D002513 ORTHO05D002720 1.9e-07 59.3 33 81.8
COL.COLO4_37135 Corchorus olitorius HOM05D002513 ORTHO05D002720 2.5e-07 58.9 29 96.6
Gohir.A08G168800 Gossypium hirsutum HOM05D002513 ORTHO05D002720 2.5e-07 58.9 29 96.6
Gohir.D08G187300 Gossypium hirsutum HOM05D002513 ORTHO05D002720 2.5e-07 58.9 29 96.6
Gorai.004G197000 Gossypium raimondii HOM05D002513 ORTHO05D002720 2.5e-07 58.9 29 96.6
Gorai.008G233900 Gossypium raimondii HOM05D002513 ORTHO05D002720 2.5e-07 58.9 29 96.6
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 2.5e-07 58.9 33 81.8
Medtr4g100750 Medicago truncatula HOM05D002513 ORTHO05D002720 2.5e-07 58.9 33 81.8
Potri.001G156000 Populus trichocarpa HOM05D002513 ORTHO05D002720 2.5e-07 58.9 33 84.8
QL12p011564 Quercus lobata HOM05D002513 ORTHO05D002720 2.5e-07 58.9 33 84.8
Thecc.03G248600 Theobroma cacao HOM05D002513 ORTHO05D002720 2.5e-07 58.9 29 96.6
AT4G17410 Arabidopsis thaliana HOM05D002513 ORTHO05D002720 3.3e-07 58.5 57 54.4
arahy.Tifrunner.gnm1.ann1.AB5AZK Arachis hypogaea HOM05D002513 ORTHO05D002720 3.3e-07 58.5 30 90.0
Os10g0431000 Oryza sativa ssp. japonica HOM05D002513 ORTHO05D002720 3.3e-07 58.5 33 78.8
Rhsim07G0110400 Rhododendron simsii HOM05D002513 ORTHO05D002720 3.3e-07 58.5 30 86.7
Sed0012573 Sechium edule HOM05D002513 ORTHO05D002720 3.3e-07 58.5 33 78.8
SEGI_13497 Sequoiadendron giganteum HOM05D002513 ORTHO05D002720 3.3e-07 58.5 30 86.7
Zm00001eb047610 Zea mays HOM05D002513 ORTHO05D002720 3.3e-07 58.5 33 78.8
arahy.Tifrunner.gnm1.ann1.18SBFH Arachis hypogaea HOM05D002513 ORTHO05D002720 4.3e-07 58.2 30 90.0
arahy.Tifrunner.gnm1.ann1.H0C62V Arachis hypogaea HOM05D002513 ORTHO05D002720 4.3e-07 58.2 30 90.0
Cpa.g.sc29.189 Carica papaya HOM05D002513 ORTHO05D002720 4.3e-07 58.2 33 81.8
Cc08_g12210 Coffea canephora HOM05D002513 ORTHO05D002720 4.3e-07 58.2 30 90.0
Migut.A01126 Erythranthe guttata HOM05D002513 ORTHO05D002720 4.3e-07 58.2 36 77.8
PSO210G4067 Papaver somniferum HOM05D002513 ORTHO05D002720 4.3e-07 58.2 33 81.8
PSO832G0398 Papaver somniferum HOM05D002513 ORTHO05D002720 4.3e-07 58.2 33 81.8
Aqoxy5G00460 Aquilegia oxysepala HOM05D002513 ORTHO05D002720 5.6e-07 57.8 36 72.2
arahy.Tifrunner.gnm1.ann1.2PBN0R Arachis hypogaea HOM05D002513 ORTHO05D002720 5.6e-07 57.8 30 86.7
arahy.Tifrunner.gnm1.ann1.F98T17 Arachis hypogaea HOM05D002513 ORTHO05D002720 5.6e-07 57.8 29 93.1
arahy.Tifrunner.gnm1.ann1.VIP11X Arachis hypogaea HOM05D002513 ORTHO05D002720 5.6e-07 57.8 29 93.1
arahy.Tifrunner.gnm1.ann1.Y2TGKW Arachis hypogaea HOM05D002513 ORTHO05D002720 5.6e-07 57.8 29 93.1
C05p33630 Brassica napus HOM05D002513 ORTHO05D002720 5.6e-07 57.8 43 62.8
BolC5t32094H Brassica oleracea HOM05D002513 ORTHO05D002720 5.6e-07 57.8 43 62.8
CDE06G2836 Ceratophyllum demersum HOM05D002513 ORTHO05D002720 5.6e-07 57.8 30 86.7
Dinv39163 Davidia involucrata HOM05D002513 ORTHO05D002720 5.6e-07 57.8 30 93.3
Glyma.05G061500 Glycine max HOM05D002513 ORTHO05D002720 5.6e-07 57.8 30 90.0
Glyma.17G143300 Glycine max HOM05D002513 ORTHO05D002720 5.6e-07 57.8 30 90.0
Gohir.A12G215700 Gossypium hirsutum HOM05D002513 ORTHO05D002720 5.6e-07 57.8 29 93.1
Nn4g26338 Nelumbo nucifera HOM05D002513 ORTHO05D002720 5.6e-07 57.8 33 78.8
Phvul.003G222100 Phaseolus vulgaris HOM05D002513 ORTHO05D002720 5.6e-07 57.8 30 90.0
VMungo0251G3547 Vigna mungo HOM05D002513 ORTHO05D002720 5.6e-07 57.8 30 90.0
Carub.0007s2401 Capsella rubella HOM05D002513 ORTHO05D002720 7.3e-07 57.4 56 51.8
Ca_03894_v3 Cicer arietinum L. HOM05D002513 ORTHO05D002720 7.3e-07 57.4 30 86.7
Thhalv10000768m.g Eutrema salsugineum HOM05D002513 ORTHO05D002720 7.3e-07 57.4 49 55.1
Nn1g02339 Nelumbo nucifera HOM05D002513 ORTHO05D002720 7.3e-07 57.4 33 78.8
Psat4g074080 Pisum sativum HOM05D002513 ORTHO05D002720 7.3e-07 57.4 30 86.7
arahy.Tifrunner.gnm1.ann1.98R2QB Arachis hypogaea HOM05D002513 ORTHO05D002720 9.5e-07 57.0 30 90.0
arahy.Tifrunner.gnm1.ann1.PD7I3L Arachis hypogaea HOM05D002513 ORTHO05D002720 9.5e-07 57.0 30 90.0
MSTRG.12118 Avicennia marina HOM05D002513 ORTHO05D002720 9.5e-07 57.0 30 90.0
Sp7g16790 Schrenkiella parvula HOM05D002513 ORTHO05D002720 9.5e-07 57.0 33 78.8
AL8G10610 Arabidopsis lyrata HOM05D002513 ORTHO05D002720 1.2e-06 56.6 33 75.8
AT5G47430 Arabidopsis thaliana HOM05D002513 ORTHO05D002720 1.2e-06 56.6 33 75.8
arahy.Tifrunner.gnm1.ann1.40EGC8 Arachis hypogaea HOM05D002513 ORTHO05D002720 1.2e-06 56.6 30 90.0
Carub.0008s0036 Capsella rubella HOM05D002513 ORTHO05D002720 1.2e-06 56.6 33 75.8
Lj8A268G24 Lonicera japonica HOM05D002513 ORTHO05D002720 1.2e-06 56.6 30 90.0
Lalb_Chr09g0329991 Lupinus albus HOM05D002513 ORTHO05D002720 1.2e-06 56.6 30 86.7
Lalb_Chr16g0386791 Lupinus albus HOM05D002513 ORTHO05D002720 1.2e-06 56.6 30 86.7
Sp2g12130 Schrenkiella parvula HOM05D002513 ORTHO05D002720 1.2e-06 56.6 33 75.8
BraA05t19472Z Brassica rapa HOM05D002513 ORTHO05D002720 1.6e-06 56.2 45 60.0
Ca_21976_v3 Cicer arietinum L. HOM05D002513 ORTHO05D002720 2.1e-06 55.8 30 86.7
Aa31LG6G140 Aethionema arabicum HOM05D002513 ORTHO05D002720 2.8e-06 55.5 34 79.4
Aa31sc151G10 Aethionema arabicum HOM05D002513 ORTHO05D002720 2.8e-06 55.5 30 83.3
BcaB07g30777 Brassica carinata HOM05D002513 ORTHO05D002720 2.8e-06 55.5 30 83.3
BcaC04g21626 Brassica carinata HOM05D002513 ORTHO05D002720 2.8e-06 55.5 30 83.3
A09p23030 Brassica napus HOM05D002513 ORTHO05D002720 2.8e-06 55.5 30 83.3
C09p29740 Brassica napus HOM05D002513 ORTHO05D002720 2.8e-06 55.5 30 83.3
BolC9t55837H Brassica oleracea HOM05D002513 ORTHO05D002720 2.8e-06 55.5 30 83.3
BraA09t37907Z Brassica rapa HOM05D002513 ORTHO05D002720 2.8e-06 55.5 30 83.3
Haze_20631 Corylus avellana HOM05D002513 ORTHO05D002720 2.8e-06 55.5 34 79.4
Lalb_Chr05g0221181 Lupinus albus HOM05D002513 ORTHO05D002720 2.8e-06 55.5 30 83.3
vmacro14069 Vaccinium macrocarpon HOM05D002513 ORTHO05D002720 2.8e-06 55.5 32 78.1
ATR0697G259 Amborella trichopoda HOM05D002513 ORTHO05D002720 3.6e-06 55.1 33 72.7
arahy.Tifrunner.gnm1.ann1.3AS7PC Arachis hypogaea HOM05D002513 ORTHO05D002720 3.6e-06 55.1 29 89.7
Cfa017519 Carpinus fangiana HOM05D002513 ORTHO05D002720 3.6e-06 55.1 31 83.9
CARHR173950 Cardamine hirsuta HOM05D002513 ORTHO05D002720 4.7e-06 54.7 33 72.7
Lsat_1_v5_gn_6_92441 Lactuca sativa HOM05D002513 ORTHO05D002720 4.7e-06 54.7 29 86.2
BcaC09g50468 Brassica carinata HOM05D002513 ORTHO05D002720 6.2e-06 54.3 33 72.7
BcaNung00096 Brassica carinata HOM05D002513 ORTHO05D002720 6.2e-06 54.3 33 72.7
A01p20000 Brassica napus HOM05D002513 ORTHO05D002720 6.2e-06 54.3 33 72.7
C01p25090 Brassica napus HOM05D002513 ORTHO05D002720 6.2e-06 54.3 33 72.7
BolC1t02460H Brassica oleracea HOM05D002513 ORTHO05D002720 6.2e-06 54.3 33 72.7
BraA01t01923Z Brassica rapa HOM05D002513 ORTHO05D002720 6.2e-06 54.3 33 72.7
Duzib068G0483 Durio zibethinus HOM05D002513 ORTHO05D002720 6.2e-06 54.3 29 89.7
Mapoly0024s0115 Marchantia polymorpha HOM05D002513 ORTHO05D002720 6.2e-06 54.3 31 74.2
SGA_v2.0_scaffold104G30173 Striga asiatica HOM05D002513 ORTHO05D002720 8.1e-06 53.9 30 86.7


User provided reference genes

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