Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0118011 Rosa chinensis HOM05D001702 ORTHO05D001791 7.3e-43 176.8 88 100.0
FvH4_1g23213 Fragaria vesca HOM05D001702 ORTHO05D001791 3.3e-19 98.2 72 72.2
FAN19G2654 Fragaria x ananassa HOM05D001702 ORTHO05D001791 4.3e-19 97.8 72 70.8
FAN26G2698 Fragaria x ananassa HOM05D001702 ORTHO05D009988 9.7e-19 96.7 72 69.4
FAN23G0666 Fragaria x ananassa HOM05D001702 ORTHO05D001791 1.3e-18 96.3 72 69.4
RcHm_v2.0_Chr2g0117991 Rosa chinensis HOM05D001702 ORTHO05D001791 2.8e-18 95.1 71 71.8
MD15G1335600 Malus domestica HOM05D001702 ORTHO05D001791 9.4e-14 80.1 56 69.6
Prupe.6G166200 Prunus persica HOM05D001702 ORTHO05D001791 1.0e-12 76.6 71 54.9
TWI73G0800 Tripterygium wilfordii HOM05D001702 ORTHO05D001791 1.0e-12 76.6 71 56.3
Prupe.6G166100 Prunus persica HOM05D001702 ORTHO05D001791 1.4e-12 76.3 78 51.3
MD15G1335500 Malus domestica HOM05D001702 ORTHO05D001791 3.9e-12 74.7 73 58.9
Ciclev10004711m.g Citrus clementina HOM05D001702 ORTHO05D001791 2.8e-10 68.6 83 48.2
Manes.12G070400 Manihot esculenta HOM05D001702 ORTHO05D001791 2.8e-10 68.6 69 53.6
Aqoxy5G00632 Aquilegia oxysepala HOM05D001702 ORTHO05D001791 6.3e-10 67.4 66 50.0
arahy.Tifrunner.gnm1.ann1.BB4STL Arachis hypogaea HOM05D001702 ORTHO05D001791 6.3e-10 67.4 49 69.4
FAN28G1053 Fragaria x ananassa HOM05D001702 ORTHO05D009988 6.3e-10 67.4 66 53.0
Haze_01045 Corylus avellana HOM05D001702 ORTHO05D001791 8.2e-10 67.0 72 48.6
RcHm_v2.0_Chr2g0118061 Rosa chinensis HOM05D001702 ORTHO05D001791 8.2e-10 67.0 54 63.0
arahy.Tifrunner.gnm1.ann1.UG7YIF Arachis hypogaea HOM05D001702 ORTHO05D001791 1.1e-09 66.6 49 67.3
Dinv38333 Davidia involucrata HOM05D001702 ORTHO05D001791 1.4e-09 66.2 67 52.2
COL.COLO4_25221 Corchorus olitorius HOM05D001702 ORTHO05D001791 1.8e-09 65.9 69 55.1
DCAR_027114 Daucus carota HOM05D001702 ORTHO05D001791 3.1e-09 65.1 67 55.2
Duzib151G0205 Durio zibethinus HOM05D001702 ORTHO05D001791 3.1e-09 65.1 69 52.2
FAN23G1116 Fragaria x ananassa HOM05D001702 ORTHO05D001791 3.1e-09 65.1 65 52.3
FAN28G2523 Fragaria x ananassa HOM05D001702 ORTHO05D001791 3.1e-09 65.1 65 52.3
Glyma.01G082200 Glycine max HOM05D001702 ORTHO05D001791 3.1e-09 65.1 66 48.5
FvH4_1g23232 Fragaria vesca HOM05D001702 ORTHO05D001791 4.1e-09 64.7 65 52.3
Potri.010G019000 Populus trichocarpa HOM05D001702 ORTHO05D001791 5.3e-09 64.3 70 50.0
THA.LOC104818839 Tarenaya hassleriana HOM05D001702 ORTHO05D001791 6.9e-09 63.9 71 49.3
Hma1.2p1_0078F.1_g040870 Hydrangea macrophylla HOM05D001702 ORTHO05D001791 9.1e-09 63.5 66 51.5
TAR636G2251 Trochodendron aralioides HOM05D001702 ORTHO05D001791 9.1e-09 63.5 71 46.5
Cpa.g.sc16.98 Carica papaya HOM05D001702 ORTHO05D001791 1.2e-08 63.2 69 49.3
Dinv44437 Davidia involucrata HOM05D001702 ORTHO05D001791 1.2e-08 63.2 67 52.2
Gorai.006G075100 Gossypium raimondii HOM05D001702 ORTHO05D001791 1.2e-08 63.2 70 52.9
Actinidia32382 Actinidia chinensis HOM05D001702 ORTHO05D001791 1.5e-08 62.8 71 47.9
CiPaw.02G087400 Carya illinoinensis HOM05D001702 ORTHO05D001791 1.5e-08 62.8 71 50.7
Prupe.6G334000 Prunus persica HOM05D001702 ORTHO05D001791 1.5e-08 62.8 66 50.0
Sabra10G0010400 Salix brachista HOM05D001702 ORTHO05D001791 1.5e-08 62.8 70 50.0
Thecc.04G275800 Theobroma cacao HOM05D001702 ORTHO05D001791 1.5e-08 62.8 68 52.9
Gohir.D09G060500 Gossypium hirsutum HOM05D001702 ORTHO05D001791 2.0e-08 62.4 70 52.9
Duzib212G0910 Durio zibethinus HOM05D001702 ORTHO05D001791 2.6e-08 62.0 69 52.2
Nn3g21269 Nelumbo nucifera HOM05D001702 ORTHO05D001791 2.6e-08 62.0 66 45.5
CANSAT01G2117 Cannabis sativa HOM05D001702 ORTHO05D001791 3.4e-08 61.6 71 47.9
ClCG01G015850 Citrullus lanatus HOM05D001702 ORTHO05D001791 3.4e-08 61.6 81 44.4
MELO3C007451.2 Cucumis melo HOM05D001702 ORTHO05D001791 3.4e-08 61.6 66 47.0
Lsat_1_v5_gn_5_51160 Lactuca sativa HOM05D001702 ORTHO05D001791 3.4e-08 61.6 64 51.6
PSO782G3443 Papaver somniferum HOM05D001702 ORTHO05D001791 3.4e-08 61.6 69 40.6
PGR044G1762 Punica granatum HOM05D001702 ORTHO05D001791 3.4e-08 61.6 50 60.0
Rhsim02G0014200 Rhododendron simsii HOM05D001702 ORTHO05D001791 3.4e-08 61.6 72 44.4
QL06p006997 Quercus lobata HOM05D001702 ORTHO05D001791 4.5e-08 61.2 87 44.8
CsaV3_6G042130 Cucumis sativus L. HOM05D001702 ORTHO05D001791 7.7e-08 60.5 66 45.5
Gohir.A09G061500 Gossypium hirsutum HOM05D001702 ORTHO05D001791 7.7e-08 60.5 71 52.1
MD12G1228800 Malus domestica HOM05D001702 ORTHO05D001791 7.7e-08 60.5 49 59.2
SGA_v2.0_scaffold89G27561 Striga asiatica HOM05D001702 ORTHO05D001791 7.7e-08 60.5 69 49.3
Actinidia00057 Actinidia chinensis HOM05D001702 ORTHO05D001791 1.0e-07 60.1 75 45.3
CiPaw.01G154500 Carya illinoinensis HOM05D001702 ORTHO05D001791 1.0e-07 60.1 67 53.7
HanXRQChr03g0079471 Helianthus annuus HOM05D001702 ORTHO05D001791 1.0e-07 60.1 61 50.8
CiPaw.07G011800 Carya illinoinensis HOM05D001702 ORTHO05D001791 1.3e-07 59.7 67 47.8
Duzib106G0121 Durio zibethinus HOM05D001702 ORTHO05D001791 1.3e-07 59.7 55 50.9
Lj4g0022457 Lotus japonicus HOM05D001702 ORTHO05D001791 1.3e-07 59.7 54 51.9
Thecc.05G251300 Theobroma cacao HOM05D001702 ORTHO05D001791 1.3e-07 59.7 55 52.7
vmacro15269 Vaccinium macrocarpon HOM05D001702 ORTHO05D001791 1.3e-07 59.7 67 47.8
Haze_04277 Corylus avellana HOM05D001702 ORTHO05D001791 1.7e-07 59.3 52 53.8
Migut.L00292 Erythranthe guttata HOM05D001702 ORTHO05D001791 1.7e-07 59.3 69 47.8
Nn4g26052 Nelumbo nucifera HOM05D001702 ORTHO05D003410 1.7e-07 59.3 54 53.7
PGR031G1056 Punica granatum HOM05D001702 ORTHO05D001791 1.7e-07 59.3 56 48.2
Solyc01g067750.3 Solanum lycopersicum HOM05D001702 ORTHO05D001791 1.7e-07 59.3 71 47.9
Atru.chr3.1950 Acer truncatum HOM05D001702 ORTHO05D001791 2.2e-07 58.9 72 48.6
BolC3t16492H Brassica oleracea HOM05D001702 ORTHO05D001791 2.2e-07 58.9 71 45.1
Dinv03764 Davidia involucrata HOM05D001702 ORTHO05D001791 2.2e-07 58.9 72 44.4
Lalb_Chr16g0383431 Lupinus albus HOM05D001702 ORTHO05D001791 2.2e-07 58.9 65 44.6
MD04G1213800 Malus domestica HOM05D001702 ORTHO05D001791 2.2e-07 58.9 55 50.9
Psat7g110440 Pisum sativum HOM05D001702 ORTHO05D001791 2.2e-07 58.9 52 55.8
Potri.013G029800 Populus trichocarpa HOM05D001702 ORTHO05D001791 2.9e-07 58.5 67 47.8
Aa31LG5G16860 Aethionema arabicum HOM05D001702 ORTHO05D001791 3.8e-07 58.2 71 43.7
CSS0015872 Camellia sinensis var. sinensis HOM05D001702 ORTHO05D001791 3.8e-07 58.2 76 47.4
Eucgr.J00263 Eucalyptus grandis HOM05D001702 ORTHO05D001791 3.8e-07 58.2 66 43.9
Nn4g26055 Nelumbo nucifera HOM05D001702 ORTHO05D001791 3.8e-07 58.2 66 45.5
Oeu010966.1 Olea europaea HOM05D001702 ORTHO05D001791 3.8e-07 58.2 69 44.9
Oeu029278.1 Olea europaea HOM05D001702 ORTHO05D001791 3.8e-07 58.2 69 46.4
PSO478G0775 Papaver somniferum HOM05D001702 ORTHO05D001791 3.8e-07 58.2 66 40.9
QL03p002774 Quercus lobata HOM05D001702 ORTHO05D001791 3.8e-07 58.2 66 43.9
Sopen01g029700 Solanum pennellii HOM05D001702 ORTHO05D001791 3.8e-07 58.2 69 47.8
ATR0706G111 Amborella trichopoda HOM05D001702 ORTHO05D001791 5.0e-07 57.8 56 50.0
BcaB03g14673 Brassica carinata HOM05D001702 ORTHO05D001791 5.0e-07 57.8 69 46.4
BcaC09g47883 Brassica carinata HOM05D001702 ORTHO05D001791 5.0e-07 57.8 71 43.7
BcaC09g47885 Brassica carinata HOM05D001702 ORTHO05D001791 5.0e-07 57.8 71 43.7
A03p34650 Brassica napus HOM05D001702 ORTHO05D001791 5.0e-07 57.8 71 43.7
BolC1t05629H Brassica oleracea HOM05D001702 ORTHO05D001791 5.0e-07 57.8 71 43.7
Duzib106G1348 Durio zibethinus HOM05D001702 ORTHO05D001791 5.0e-07 57.8 55 50.9
TPR.G32419 Trifolium pratense HOM05D001702 ORTHO05D001791 5.0e-07 57.8 52 51.9
AT3G06350 Arabidopsis thaliana HOM05D001702 ORTHO05D001791 6.5e-07 57.4 71 43.7
CARHR080870 Cardamine hirsuta HOM05D001702 ORTHO05D001791 6.5e-07 57.4 71 46.5
PSO675G3151 Papaver somniferum HOM05D001702 ORTHO05D001791 6.5e-07 57.4 66 43.9
PSO675G7253 Papaver somniferum HOM05D001702 ORTHO05D001791 6.5e-07 57.4 66 43.9
PSO675G8425 Papaver somniferum HOM05D001702 ORTHO05D001791 6.5e-07 57.4 66 43.9
Sabra13G0029900 Salix brachista HOM05D001702 ORTHO05D001791 6.5e-07 57.4 55 49.1
Atru.chr2.604 Acer truncatum HOM05D001702 ORTHO05D001791 8.5e-07 57.0 55 50.9
BcaC05g29808 Brassica carinata HOM05D001702 ORTHO05D001791 8.5e-07 57.0 71 43.7
A05p41690 Brassica napus HOM05D001702 ORTHO05D001791 8.5e-07 57.0 71 43.7
C05p60900 Brassica napus HOM05D001702 ORTHO05D001791 8.5e-07 57.0 71 43.7
BolC5t34746H Brassica oleracea HOM05D001702 ORTHO05D001791 8.5e-07 57.0 71 43.7
BraA01t04444Z Brassica rapa HOM05D001702 ORTHO05D001791 8.5e-07 57.0 71 43.7
BraA05t22888Z Brassica rapa HOM05D001702 ORTHO05D001791 8.5e-07 57.0 71 43.7
CAN.G223.1 Capsicum annuum HOM05D001702 ORTHO05D001791 8.5e-07 57.0 69 46.4
ClCG02G000920 Citrullus lanatus HOM05D001702 ORTHO05D001791 8.5e-07 57.0 79 40.5
Dinv01283 Davidia involucrata HOM05D001702 ORTHO05D001791 8.5e-07 57.0 72 43.1
Peaxi162Scf01067g00113 Petunia axillaris HOM05D001702 ORTHO05D001791 8.5e-07 57.0 68 48.5
Psat7g246800 Pisum sativum HOM05D001702 ORTHO05D001791 8.5e-07 57.0 52 55.8
Sp3g05260 Schrenkiella parvula HOM05D001702 ORTHO05D001791 8.5e-07 57.0 71 43.7
Sed0013245 Sechium edule HOM05D001702 ORTHO05D001791 8.5e-07 57.0 69 47.8
BNapus_Darmor_BZH_scaffold_118p00200 Brassica napus HOM05D001702 ORTHO05D001791 1.1e-06 56.6 75 42.7
AL3G17290 Arabidopsis lyrata HOM05D001702 ORTHO05D001791 1.4e-06 56.2 71 43.7
MSTRG.21820 Avicennia marina HOM05D001702 ORTHO05D001791 1.4e-06 56.2 69 47.8
BcaB04g21329 Brassica carinata HOM05D001702 ORTHO05D001791 1.4e-06 56.2 71 45.1
BraA03t12642Z Brassica rapa HOM05D001702 ORTHO05D001791 1.4e-06 56.2 71 42.3
CSS0042855 Camellia sinensis var. sinensis HOM05D001702 ORTHO05D001791 1.4e-06 56.2 67 43.3
Duzib106G2050 Durio zibethinus HOM05D001702 ORTHO05D001791 1.4e-06 56.2 55 49.1
Thhalv10020322m.g Eutrema salsugineum HOM05D001702 ORTHO05D001791 1.4e-06 56.2 71 43.7
Lj6A668G45 Lonicera japonica HOM05D001702 ORTHO05D001791 1.4e-06 56.2 67 44.8
TAR633G2708 Trochodendron aralioides HOM05D001702 ORTHO05D001791 1.4e-06 56.2 52 53.8
VMungo1215G3068 Vigna mungo HOM05D001702 ORTHO05D001791 1.4e-06 56.2 68 44.1
C03p42120 Brassica napus HOM05D001702 ORTHO05D001791 2.5e-06 55.5 71 43.7
Carub.0003s0579 Capsella rubella HOM05D001702 ORTHO05D001791 2.5e-06 55.5 70 45.7
ECA240G2914 Erigeron canadensis HOM05D001702 ORTHO05D001791 2.5e-06 55.5 58 50.0
Phvul.002G227400 Phaseolus vulgaris HOM05D001702 ORTHO05D001791 2.5e-06 55.5 68 45.6
RcHm_v2.0_Chr3g0453141 Rosa chinensis HOM05D001702 ORTHO05D001791 2.5e-06 55.5 55 47.3
Sc09g0003580 Simmondsia chinensis HOM05D001702 ORTHO05D001791 2.5e-06 55.5 57 47.4
GSVIVG01021979001 Vitis vinifera HOM05D001702 ORTHO05D001791 2.5e-06 55.5 51 54.9
Ca_00738_v3 Cicer arietinum L. HOM05D001702 ORTHO05D001791 3.2e-06 55.1 53 49.1
CsaV3_2G017780 Cucumis sativus L. HOM05D001702 ORTHO05D001791 3.2e-06 55.1 66 45.5
Aa31LG5G16850 Aethionema arabicum HOM05D001702 ORTHO05D001791 4.2e-06 54.7 65 44.6
arahy.Tifrunner.gnm1.ann1.5K1S29 Arachis hypogaea HOM05D001702 ORTHO05D001791 4.2e-06 54.7 65 44.6
arahy.Tifrunner.gnm1.ann1.RS06VI Arachis hypogaea HOM05D001702 ORTHO05D001791 4.2e-06 54.7 60 45.0
Eucgr.H04427 Eucalyptus grandis HOM05D001702 ORTHO05D001791 4.2e-06 54.7 56 46.4
HanXRQChr13g0410851 Helianthus annuus HOM05D001702 ORTHO05D001791 4.2e-06 54.7 67 47.8
QL03p002791 Quercus lobata HOM05D001702 ORTHO05D001791 4.2e-06 54.7 52 48.1
Duzib128G0047 Durio zibethinus HOM05D001702 ORTHO05D001791 5.5e-06 54.3 48 56.2
Sed0027183 Sechium edule HOM05D001702 ORTHO05D001791 5.5e-06 54.3 79 39.2
CANSAT54G1036 Cannabis sativa HOM05D001702 ORTHO05D001791 7.2e-06 53.9 55 49.1
Eucgr.H04428 Eucalyptus grandis HOM05D001702 ORTHO05D001791 7.2e-06 53.9 56 51.8
PGR031G2039 Punica granatum HOM05D001702 ORTHO05D001791 7.2e-06 53.9 66 47.0
EL10Ac4g09262 Beta vulgaris HOM05D001702 ORTHO05D001791 9.4e-06 53.5 49 51.0
Cfa006507 Carpinus fangiana HOM05D001702 ORTHO05D001791 9.4e-06 53.5 46 52.2
CiPaw.07G011600 Carya illinoinensis HOM05D001702 ORTHO05D001791 9.4e-06 53.5 55 49.1
Haze_04278 Corylus avellana HOM05D001702 ORTHO05D001791 9.4e-06 53.5 46 52.2
FAN05G2554 Fragaria x ananassa HOM05D001702 ORTHO05D001791 9.4e-06 53.5 55 47.3
FAN05G4294 Fragaria x ananassa HOM05D001702 ORTHO05D001791 9.4e-06 53.5 55 47.3
HanXRQChr13g0410871 Helianthus annuus HOM05D001702 ORTHO05D001791 9.4e-06 53.5 67 46.3


User provided reference genes

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