Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0110911 Rosa chinensis HOM05D003245 ORTHO05D004125 4.0e-151 538.1 278 100.0
Prupe.1G086600 Prunus persica HOM05D003245 ORTHO05D004125 3.7e-32 142.9 175 52.6
THA.LOC104819980 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 2.4e-31 140.2 170 50.6
Potri.006G169200 Populus trichocarpa HOM05D003245 ORTHO05D004125 3.5e-30 136.3 169 51.5
RcHm_v2.0_Chr4g0402611 Rosa chinensis HOM05D003245 ORTHO05D004125 3.5e-30 136.3 173 53.2
CDE02G4007 Ceratophyllum demersum HOM05D003245 ORTHO05D004125 5.9e-30 135.6 170 52.4
TAR626G1505 Trochodendron aralioides HOM05D003245 ORTHO05D004125 5.9e-30 135.6 169 50.9
THA.LOC104803937 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 1.0e-29 134.8 172 50.6
Potri.018G093800 Populus trichocarpa HOM05D003245 ORTHO05D004125 1.7e-29 134.0 168 50.0
Carub.0007s1035 Capsella rubella HOM05D003245 ORTHO05D004125 3.8e-29 132.9 168 47.0
MELO3C005378.2 Cucumis melo HOM05D003245 ORTHO05D004125 8.6e-29 131.7 168 47.6
RcHm_v2.0_Chr5g0045341 Rosa chinensis HOM05D003245 ORTHO05D004125 8.6e-29 131.7 97 84.5
ClCG01G005520 Citrullus lanatus HOM05D003245 ORTHO05D004125 1.5e-28 131.0 168 47.6
BraA08t33893Z Brassica rapa HOM05D003245 ORTHO05D004125 1.9e-28 130.6 170 48.8
CANSAT11G2281 Cannabis sativa HOM05D003245 ORTHO05D004125 1.9e-28 130.6 172 48.3
CsaV3_5G005750 Cucumis sativus L. HOM05D003245 ORTHO05D004125 1.9e-28 130.6 168 47.6
PSO541G0246 Papaver somniferum HOM05D003245 ORTHO05D004125 2.5e-28 130.2 173 48.6
Thhalv10025913m.g Eutrema salsugineum HOM05D003245 ORTHO05D004125 3.3e-28 129.8 174 48.3
TAR383G0562 Trochodendron aralioides HOM05D003245 ORTHO05D004125 3.3e-28 129.8 169 50.3
CARHR109400 Cardamine hirsuta HOM05D003245 ORTHO05D004125 4.2e-28 129.4 174 49.4
Hma1.2p1_2478F.1_g322920 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 4.2e-28 129.4 173 49.1
PSO675G6578 Papaver somniferum HOM05D003245 ORTHO05D004125 4.2e-28 129.4 173 48.6
Sp7g28140 Schrenkiella parvula HOM05D003245 ORTHO05D004125 4.2e-28 129.4 174 48.3
Aa31LG8G15930 Aethionema arabicum HOM05D003245 ORTHO05D004125 7.2e-28 128.6 171 47.4
MBI14_g17360_MAGBIO Magnolia biondii HOM05D003245 ORTHO05D004125 7.2e-28 128.6 174 46.0
GSVIVG01029199001 Vitis vinifera HOM05D003245 ORTHO05D004125 9.5e-28 128.3 170 48.2
Cpa.g.sc95.57 Carica papaya HOM05D003245 ORTHO05D004125 1.6e-27 127.5 168 47.6
Dinv42729 Davidia involucrata HOM05D003245 ORTHO05D004125 2.1e-27 127.1 170 48.8
Dinv43372 Davidia involucrata HOM05D003245 ORTHO05D004125 2.1e-27 127.1 170 48.8
PGR102G0922 Punica granatum HOM05D003245 ORTHO05D004125 2.8e-27 126.7 171 48.0
AT4G30260 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 3.6e-27 126.3 170 48.8
BcaC01g01161 Brassica carinata HOM05D003245 ORTHO05D004125 6.1e-27 125.6 170 47.6
Sabra18G0080700 Salix brachista HOM05D003245 ORTHO05D004125 6.1e-27 125.6 168 48.2
Sp3g32300 Schrenkiella parvula HOM05D003245 ORTHO05D004125 6.1e-27 125.6 173 48.0
Oeu049685.1 Olea europaea HOM05D003245 ORTHO05D004125 8.0e-27 125.2 175 46.3
FvH4_4g09840 Fragaria vesca HOM05D003245 ORTHO05D004125 1.0e-26 124.8 171 48.0
FAN12G1523 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.0e-26 124.8 171 48.0
FAN12G3343 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.0e-26 124.8 171 48.0
Sabra06G0130400 Salix brachista HOM05D003245 ORTHO05D004125 1.0e-26 124.8 174 47.7
Atru.chr7.659 Acer truncatum HOM05D003245 ORTHO05D004125 1.4e-26 124.4 172 47.7
AL7G21890 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 1.8e-26 124.0 171 46.2
Gohir.A05G113700 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.8e-26 124.0 169 46.2
A08p19320 Brassica napus HOM05D003245 ORTHO05D004125 2.3e-26 123.6 170 47.1
AT2G18840 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 4.0e-26 122.9 174 47.7
AL3G53110 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 5.2e-26 122.5 171 48.5
CiPaw.08G036800 Carya illinoinensis HOM05D003245 ORTHO05D004125 5.2e-26 122.5 161 47.2
Actinidia35994 Actinidia chinensis HOM05D003245 ORTHO05D004125 6.8e-26 122.1 168 48.2
Nitab4.5_0004307g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 6.8e-26 122.1 170 47.6
TWI12G0523 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 6.8e-26 122.1 170 47.6
BcaNung03004 Brassica carinata HOM05D003245 ORTHO05D004125 1.2e-25 121.3 173 46.8
Carub.0003s3307 Capsella rubella HOM05D003245 ORTHO05D004125 1.2e-25 121.3 176 48.3
Gohir.D05G114100 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.2e-25 121.3 169 45.6
Gorai.009G118100 Gossypium raimondii HOM05D003245 ORTHO05D004125 1.2e-25 121.3 169 45.6
Lsat_1_v5_gn_7_54500 Lactuca sativa HOM05D003245 ORTHO05D004125 1.5e-25 120.9 177 47.5
Manes.06G024000 Manihot esculenta HOM05D003245 ORTHO05D004125 1.5e-25 120.9 177 46.9
CDE04G1421 Ceratophyllum demersum HOM05D000126 ORTHO05D000085 3.4e-25 119.8 168 45.2
Manes.14G150500 Manihot esculenta HOM05D003245 ORTHO05D004125 5.7e-25 119.0 168 47.0
CARHR238170 Cardamine hirsuta HOM05D003245 ORTHO05D004125 7.5e-25 118.6 174 47.1
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 7.5e-25 118.6 169 45.0
FAN22G0867 Fragaria x ananassa HOM05D003245 ORTHO05D004125 7.5e-25 118.6 167 47.3
Cfa013513 Carpinus fangiana HOM05D003245 ORTHO05D004125 9.8e-25 118.2 169 45.6
Sed0004345 Sechium edule HOM05D003245 ORTHO05D004125 9.8e-25 118.2 168 47.6
RcHm_v2.0_Chr1g0326901 Rosa chinensis HOM05D003245 ORTHO05D004125 2.2e-24 117.1 83 84.3
Hund22399 Selenicereus undatus HOM05D003245 ORTHO05D004125 2.2e-24 117.1 169 44.4
TWI12G0425 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 2.8e-24 116.7 170 46.5
Aqoxy1G01965 Aquilegia oxysepala HOM05D003245 ORTHO05D004125 3.7e-24 116.3 180 43.9
Ciclev10009141m.g Citrus clementina HOM05D003245 ORTHO05D004125 3.7e-24 116.3 170 47.6
Solyc07g018210.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 3.7e-24 116.3 174 46.0
Solyc07g018220.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 3.7e-24 116.3 174 46.0
A01p07880 Brassica napus HOM05D003245 ORTHO05D004125 4.9e-24 115.9 168 47.0
C03p88780 Brassica napus HOM05D003245 ORTHO05D004125 4.9e-24 115.9 170 45.3
Ah.08g212150 Amaranthus hybridus HOM05D003245 ORTHO05D004125 6.3e-24 115.5 177 44.1
Lj4g0022126 Lotus japonicus HOM05D003245 ORTHO05D004125 6.3e-24 115.5 172 47.7
Dinv41253 Davidia involucrata HOM05D003245 ORTHO05D004125 8.3e-24 115.2 173 47.4
MD13G1256000 Malus domestica HOM05D003245 ORTHO05D004125 1.1e-23 114.8 169 45.6
EL10Ac8g19425 Beta vulgaris HOM05D003245 ORTHO05D004125 1.4e-23 114.4 176 46.0
BolC3t21189H Brassica oleracea HOM05D003245 ORTHO05D004125 1.4e-23 114.4 168 45.2
CiPaw.07G191800 Carya illinoinensis HOM05D003245 ORTHO05D004125 1.4e-23 114.4 169 46.7
Sc18g0007470 Simmondsia chinensis HOM05D003245 ORTHO05D004125 1.4e-23 114.4 169 45.0
CSS0017554 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 1.8e-23 114.0 156 44.9
Duzib235G0677 Durio zibethinus HOM05D003245 ORTHO05D004125 1.8e-23 114.0 169 43.8
SalBow6G0700 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.8e-23 114.0 176 45.5
SalBow6G1711 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.8e-23 114.0 176 45.5
Sopen07g007320 Solanum pennellii HOM05D003245 ORTHO05D004125 1.8e-23 114.0 174 45.4
Sopen07g007330 Solanum pennellii HOM05D003245 ORTHO05D004125 1.8e-23 114.0 174 45.4
Thecc.06G060900 Theobroma cacao HOM05D003245 ORTHO05D004125 1.8e-23 114.0 170 44.7
Haze_22109 Corylus avellana HOM05D003245 ORTHO05D004125 2.4e-23 113.6 163 45.4
MD13G1256300 Malus domestica HOM05D003245 ORTHO05D004125 2.4e-23 113.6 169 45.0
Sed0003509 Sechium edule HOM05D003245 ORTHO05D004125 3.2e-23 113.2 171 43.3
HPP92_001091 Vanilla planifolia HOM05D003245 ORTHO05D004125 3.2e-23 113.2 174 44.3
AUR62040631 Chenopodium quinoa HOM05D003245 ORTHO05D004125 5.4e-23 112.5 178 44.4
Duzib192G0054 Durio zibethinus HOM05D003245 ORTHO05D004125 5.4e-23 112.5 169 44.4
HanXRQChr09g0254481 Helianthus annuus HOM05D003245 ORTHO05D004125 5.4e-23 112.5 169 45.0
PGSC0003DMG400002422 Solanum tuberosum HOM05D003245 ORTHO05D004125 5.4e-23 112.5 175 45.7
BraA01t00734Z Brassica rapa HOM05D003245 ORTHO05D004125 1.2e-22 111.3 168 46.4
HanXRQChr09g0245001 Helianthus annuus HOM05D003245 ORTHO05D004125 1.2e-22 111.3 165 44.8
Hma1.2p1_1710F.1_g298640 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 1.2e-22 111.3 174 46.6
QL02p097606 Quercus lobata HOM05D003245 ORTHO05D004125 1.2e-22 111.3 170 45.3
TPR.G5416 Trifolium pratense HOM05D003245 ORTHO05D004125 1.2e-22 111.3 177 45.8
BcaC09g51810 Brassica carinata HOM05D003245 ORTHO05D004125 1.6e-22 110.9 168 44.0
C01p08790 Brassica napus HOM05D003245 ORTHO05D004125 1.6e-22 110.9 168 44.0
BolC1t00869H Brassica oleracea HOM05D003245 ORTHO05D004125 1.6e-22 110.9 168 44.0
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 1.6e-22 110.9 159 45.3
Lj7A472T61 Lonicera japonica HOM05D003245 ORTHO05D004125 1.6e-22 110.9 170 43.5
PGSC0003DMG401002421 Solanum tuberosum HOM05D003245 ORTHO05D004125 1.6e-22 110.9 170 44.7
FAN07G1981 Fragaria x ananassa HOM05D003245 ORTHO05D004125 2.0e-22 110.5 215 38.6
Lsat_1_v5_gn_8_67041 Lactuca sativa HOM05D003245 ORTHO05D004125 2.7e-22 110.2 169 45.0
Peaxi162Scf00231g00812 Petunia axillaris HOM05D003245 ORTHO05D004125 4.5e-22 109.4 181 42.0
vmacro13120 Vaccinium macrocarpon HOM05D003245 ORTHO05D004125 4.5e-22 109.4 169 42.6
VMungo1215G1658 Vigna mungo HOM05D003245 ORTHO05D004125 4.5e-22 109.4 162 45.1
CSS0020996 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 7.8e-22 108.6 156 42.3
Os01g0867700 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 1.3e-21 107.8 170 44.7
SGA_v2.0_scaffold66G22455 Striga asiatica HOM05D003245 ORTHO05D004125 1.3e-21 107.8 174 46.6
Duzib160G0168 Durio zibethinus HOM05D003245 ORTHO05D004125 1.7e-21 107.5 169 42.0
BcaB03g12640 Brassica carinata HOM05D003245 ORTHO05D004125 2.9e-21 106.7 177 40.7
Migut.K00245 Erythranthe guttata HOM05D003245 ORTHO05D004125 2.9e-21 106.7 183 42.1
CAN.G5.10 Capsicum annuum HOM05D003245 ORTHO05D004125 3.9e-21 106.3 173 44.5
Nitab4.5_0007820g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 3.9e-21 106.3 170 42.9
arahy.Tifrunner.gnm1.ann1.6TSM6Q Arachis hypogaea HOM05D003245 ORTHO05D004125 6.6e-21 105.5 169 44.4
arahy.Tifrunner.gnm1.ann1.LWG93W Arachis hypogaea HOM05D003245 ORTHO05D004125 6.6e-21 105.5 169 44.4
Lalb_Chr07g0180421 Lupinus albus HOM05D003245 ORTHO05D004125 6.6e-21 105.5 172 44.8
MSTRG.19702 Avicennia marina HOM05D003245 ORTHO05D004125 8.6e-21 105.1 194 45.4
CAN.G32.5 Capsicum annuum HOM05D003245 ORTHO05D004125 8.6e-21 105.1 173 44.5
Ca_21218_v3 Cicer arietinum L. HOM05D003245 ORTHO05D004125 1.5e-20 104.4 171 44.4
ATR0580G426 Amborella trichopoda HOM05D003245 ORTHO05D004125 1.9e-20 104.0 180 40.6
ECA236G4509 Erigeron canadensis HOM05D003245 ORTHO05D004125 2.5e-20 103.6 172 40.7
Medtr4g128290 Medicago truncatula HOM05D003245 ORTHO05D004125 2.5e-20 103.6 173 42.8
SEGI_27058 Sequoiadendron giganteum HOM05D003245 ORTHO05D004125 2.5e-20 103.6 174 43.1
Rhsim01G0005500 Rhododendron simsii HOM05D003245 ORTHO05D004125 4.3e-20 102.8 169 42.0
Phvul.003G146500 Phaseolus vulgaris HOM05D003245 ORTHO05D004125 7.3e-20 102.1 160 41.9
Zm00001eb366670 Zea mays HOM05D003245 ORTHO05D004125 7.3e-20 102.1 170 42.4
Cc06_g13310 Coffea canephora HOM05D003245 ORTHO05D004125 9.5e-20 101.7 168 42.9
HanXRQChr12g0365401 Helianthus annuus HOM05D003245 ORTHO05D004125 9.5e-20 101.7 170 41.8
MBI16_g35929_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 1.6e-19 100.9 169 40.2
Glyma.17G064000 Glycine max HOM05D003245 ORTHO05D004125 3.6e-19 99.8 160 40.6
Nitab4.5_0025199g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 4.7e-19 99.4 170 44.1
Migut.J01473 Erythranthe guttata HOM05D003245 ORTHO05D004125 6.1e-19 99.0 177 43.5
HPP92_003207 Vanilla planifolia HOM05D003245 ORTHO05D004125 6.1e-19 99.0 168 40.5
Zm00001eb146670 Zea mays HOM05D003245 ORTHO05D004125 8.0e-19 98.6 170 41.2
MSTRG.6209 Avicennia marina HOM05D003245 ORTHO05D004125 1.4e-18 97.8 186 38.7
Glyma.13G096100 Glycine max HOM05D003245 ORTHO05D004125 2.3e-18 97.1 162 45.7
Lj9C686G6 Lonicera japonica HOM05D003245 ORTHO05D004125 2.3e-18 97.1 171 39.8
SGA_v2.0_scaffold12G06064 Striga asiatica HOM05D003245 ORTHO05D004125 8.9e-18 95.1 168 40.5
MSTRG.26224 Avicennia marina HOM05D003245 ORTHO05D004125 3.4e-17 93.2 175 38.9
unitig_22.g6851 Utricularia gibba HOM05D003245 ORTHO05D004125 5.8e-17 92.4 169 40.2
ECA240G1971 Erigeron canadensis HOM05D003245 ORTHO05D004125 7.5e-17 92.0 180 38.3
Lalb_Chr12g0199351 Lupinus albus HOM05D003245 ORTHO05D004125 9.8e-17 91.7 160 43.1
Gohir.D10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 3.7e-16 89.7 170 42.4
SGA_v2.0_scaffold17G07907 Striga asiatica HOM05D003245 ORTHO05D004125 3.7e-16 89.7 169 39.1
Gohir.A10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 4.9e-16 89.4 170 41.8
Gorai.011G003600 Gossypium raimondii HOM05D003245 ORTHO05D004125 4.9e-16 89.4 169 42.6
unitig_8.g3424 Utricularia gibba HOM05D003245 ORTHO05D004125 1.4e-15 87.8 169 44.4
Oeu042156.1 Olea europaea HOM05D003245 ORTHO05D004125 4.1e-15 86.3 222 36.9
Os05g0437500 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 5.4e-15 85.9 172 41.9
HPP92_001991 Vanilla planifolia HOM05D000154 ORTHO05D000092 2.0e-14 84.0 184 35.3
SalBow1G7127 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.3e-13 81.3 162 37.7
Nitab4.5_0026144g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.1e-12 78.2 148 38.5
Pp3c7_23160 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.2e-11 74.7 160 41.2
Pp3c7_23220 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.2e-11 74.7 160 41.2
Pp3c11_7990 Physcomitrium patens HOM05D003245 ORTHO05D004125 4.7e-11 72.8 152 38.2
RcHm_v2.0_Chr2g0167531 Rosa chinensis HOM05D003245 ORTHO05D004125 4.7e-11 72.8 39 92.3
Nitab4.5_0024961g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 6.2e-11 72.4 148 38.5
Mapoly0113s0010 Marchantia polymorpha HOM05D003245 ORTHO05D004125 8.0e-11 72.0 160 34.4
GSVIVG01016111001 Vitis vinifera HOM05D003245 ORTHO05D004125 6.8e-10 68.9 142 35.9
Dinv23253 Davidia involucrata HOM05D003245 ORTHO05D004125 1.5e-09 67.8 39 71.8
BcaC06g35725 Brassica carinata HOM05D003245 ORTHO05D017662 2.0e-09 67.4 141 36.9
Psat4g011760 Pisum sativum HOM05D003245 ORTHO05D004125 3.4e-09 66.6 156 34.6
AUR62034052 Chenopodium quinoa HOM05D003245 ORTHO05D004125 4.4e-09 66.2 34 88.2
BolC4t25984H Brassica oleracea HOM05D003245 ORTHO05D017662 9.8e-09 65.1 89 44.9
BcaC02g09549 Brassica carinata HOM05D003245 ORTHO05D004125 1.3e-08 64.7 39 76.9
BcaC05g28230 Brassica carinata HOM05D003245 ORTHO05D004125 1.3e-08 64.7 39 76.9
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 1.3e-08 64.7 39 76.9
C05p42900 Brassica napus HOM05D003245 ORTHO05D017662 1.3e-08 64.7 39 76.9
Zm00001eb289090 Zea mays HOM05D003245 ORTHO05D004125 1.7e-08 64.3 139 36.7
BcaC04g20174 Brassica carinata HOM05D003245 ORTHO05D014500 2.9e-08 63.5 66 54.5
SMO146G0102 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 3.7e-08 63.2 169 29.0
BolC7t41634H Brassica oleracea HOM05D003245 ORTHO05D017662 1.9e-07 60.8 134 37.3
BolC5t33018H Brassica oleracea HOM05D003245 ORTHO05D017662 4.1e-07 59.7 98 40.8
BolC9t56073H Brassica oleracea HOM05D003245 ORTHO05D004125 4.1e-07 59.7 137 33.6
Sopen07g007350 Solanum pennellii HOM05D003245 ORTHO05D004125 4.1e-07 59.7 159 34.6
Solyc07g018230.2 Solanum lycopersicum HOM05D003245 ORTHO05D004125 5.4e-07 59.3 143 35.0
C01p16400 Brassica napus HOM05D003245 ORTHO05D017662 1.6e-06 57.8 60 55.0
C09p32250 Brassica napus HOM05D003245 ORTHO05D017662 2.1e-06 57.4 90 41.1
Gorai.005G122000 Gossypium raimondii HOM05D003245 ORTHO05D004125 3.5e-06 56.6 29 89.7
A06p20490 Brassica napus HOM05D003245 ORTHO05D014500 7.8e-06 55.5 33 78.8
BraA06t25129Z Brassica rapa HOM05D003245 ORTHO05D017662 7.8e-06 55.5 33 78.8


User provided reference genes

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