Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 2.1e-233 812.4 532 100.0
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.4e-181 639.4 536 80.4
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.6e-180 636.7 539 79.0
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.8e-176 623.2 546 78.9
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 8.3e-174 614.4 557 73.6
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 9.6e-162 574.3 536 73.9
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 2.9e-158 562.8 432 74.1
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 7.8e-156 554.7 433 72.7
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 4.3e-154 548.9 435 72.2
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 4.2e-149 532.3 431 71.5
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 5.4e-149 531.9 537 66.5
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 3.0e-147 526.2 436 71.1
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 5.1e-147 525.4 421 70.8
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 6.9e-144 515.0 428 66.8
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 2.0e-143 513.5 429 66.2
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 4.9e-142 508.8 439 67.0
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.4e-141 507.3 428 65.4
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 9.3e-141 504.6 423 69.5
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.0e-139 501.1 424 73.8
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.3e-139 500.0 423 68.8
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 5.1e-139 498.8 424 70.5
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 1.5e-138 497.3 423 69.7
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 1.9e-138 496.9 476 66.8
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 4.3e-138 495.7 427 67.7
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 5.6e-138 495.4 440 66.4
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 7.4e-138 495.0 419 70.6
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 8.1e-137 491.5 550 61.6
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.2e-135 487.6 548 65.0
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 1.5e-135 487.3 451 69.0
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 2.0e-135 486.9 428 70.1
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.6e-135 486.5 421 66.5
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.7e-134 483.8 431 66.1
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.2e-134 483.4 363 71.1
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 3.8e-134 482.6 425 68.7
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 6.5e-134 481.9 425 68.0
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 8.4e-134 481.5 329 79.3
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 1.4e-133 480.7 551 61.5
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 1.4e-133 480.7 425 67.8
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 2.5e-133 479.9 435 67.8
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 4.2e-133 479.2 422 66.1
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 7.1e-133 478.4 477 59.5
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 3.5e-132 476.1 391 72.1
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 6.0e-132 475.3 434 66.8
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 3.9e-131 472.6 425 66.4
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 6.7e-131 471.9 420 65.0
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 8.7e-131 471.5 416 67.5
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 3.3e-130 469.5 436 67.0
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 4.8e-129 465.7 399 70.2
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 3.1e-128 463.0 549 59.4
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 5.3e-128 462.2 434 62.9
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 2.6e-127 459.9 421 67.0
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.4e-127 459.5 427 63.0
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.7e-126 457.2 418 66.7
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 1.4e-125 454.1 422 66.8
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 2.5e-125 453.4 426 62.9
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 4.2e-125 452.6 427 64.6
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 3.9e-123 446.0 430 62.3
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.9e-122 443.7 444 59.7
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 9.7e-122 441.4 406 64.0
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 2.2e-121 440.3 357 72.8
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 1.3e-118 431.0 460 59.6
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 8.5e-118 428.3 444 63.7
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 4.2e-117 426.0 398 66.8
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 5.5e-117 425.6 443 61.2
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 6.1e-116 422.2 459 59.0
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 1.4e-115 421.0 421 61.5
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 1.4e-115 421.0 443 57.6
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 1.5e-114 417.5 421 61.3
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 4.3e-114 416.0 393 65.6
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 9.7e-114 414.8 551 52.6
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 3.7e-113 412.9 405 67.2
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 3.7e-113 412.9 402 63.9
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 4.1e-112 409.5 344 69.5
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 4.5e-111 406.0 446 59.6
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.2e-110 403.7 439 58.1
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 8.5e-110 401.7 429 60.4
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 1.9e-109 400.6 374 66.3
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 2.5e-109 400.2 427 60.4
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 7.2e-109 398.7 350 70.6
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 2.7e-108 396.7 427 60.2
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 7.9e-108 395.2 332 65.4
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 7.9e-108 395.2 635 44.4
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 1.5e-106 391.0 542 51.7
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 2.6e-106 390.2 422 55.5
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 5.7e-106 389.0 542 51.8
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 5.7e-106 389.0 387 66.1
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 1.7e-105 387.5 386 64.8
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.1e-104 384.8 380 63.9
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 7.0e-104 382.1 386 62.7
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 1.7e-102 377.5 451 58.5
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.7e-102 377.5 289 67.8
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 5.0e-102 375.9 365 57.5
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 6.5e-102 375.6 355 65.1
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 1.6e-100 370.9 436 59.2
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 2.1e-100 370.5 430 60.5
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 1.4e-99 367.9 428 60.0
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 2.3e-99 367.1 389 58.9
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 1.3e-97 361.3 407 59.5
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 4.1e-96 356.3 547 47.5
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 1.6e-95 354.4 396 57.8
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 1.6e-95 354.4 396 57.8
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 2.0e-95 354.0 359 64.6
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 2.9e-94 350.1 435 51.0
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.5e-93 347.8 278 67.6
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.9e-93 347.4 437 51.0
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 3.6e-92 343.2 229 75.1
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.8e-91 340.9 425 52.0
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 2.3e-91 340.5 365 61.4
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 3.8e-86 323.2 251 69.3
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 9.4e-85 318.5 424 51.7
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 4.5e-79 299.7 423 48.5
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.6e-76 291.2 341 50.7
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 2.3e-75 287.3 543 43.1
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.6e-66 257.3 416 43.3
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 3.2e-64 250.4 398 47.2
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 4.1e-64 250.0 400 45.0
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.2e-63 248.4 202 59.9
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.3e-61 239.2 227 57.3
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 3.5e-55 220.3 378 45.0
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 1.4e-51 208.4 351 39.0
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.4e-48 197.6 359 40.1
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 3.5e-47 193.7 197 60.9
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 6.9e-43 179.5 295 38.6
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.3e-41 175.3 194 57.7
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 1.1e-32 145.6 232 52.6
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 3.2e-32 144.1 230 52.6
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 3.2e-32 144.1 230 52.6
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 6.4e-25 119.8 71 81.7
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 4.2e-16 90.5 84 57.1
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 3.9e-14 84.0 265 25.7
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.8e-11 75.1 43 72.1
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 1.8e-11 75.1 43 72.1
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 1.8e-11 75.1 43 72.1
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 1.5e-10 72.0 338 25.4
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 1.9e-08 65.1 57 54.4
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 2.7e-07 61.2 44 63.6


User provided reference genes

Program Settings