Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0101111 Rosa chinensis HOM05D004035 ORTHO05D004631 8.9e-279 963.0 496 100.0
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 2.0e-238 828.9 450 97.6
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 1.9e-233 812.4 448 94.9
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.3e-232 809.7 448 94.4
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 4.8e-232 807.7 448 94.4
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 1.4e-223 779.6 448 89.5
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 2.6e-222 775.4 449 89.5
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.7e-221 772.7 448 91.5
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 2.5e-220 768.8 447 88.6
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 6.1e-203 711.1 449 82.4
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 1.0e-202 710.3 448 81.2
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 1.5e-201 706.4 448 81.5
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 1.5e-201 706.4 448 80.6
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 2.6e-201 705.7 448 79.9
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 4.4e-201 704.9 449 80.4
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 3.7e-200 701.8 448 80.6
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 1.8e-199 699.5 448 80.1
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 5.3e-199 698.0 448 80.1
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 6.5e-197 691.0 448 79.2
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 1.5e-196 689.9 448 79.2
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 1.5e-196 689.9 448 78.6
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 1.9e-196 689.5 447 79.6
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 2.5e-196 689.1 448 79.2
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 4.2e-196 688.3 448 79.0
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 7.2e-196 687.6 448 79.2
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 9.4e-196 687.2 448 78.1
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 1.2e-195 686.8 449 78.8
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.6e-195 686.4 448 79.0
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 2.1e-195 686.0 448 79.0
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 2.7e-195 685.6 448 78.6
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 6.1e-195 684.5 461 77.0
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 1.4e-194 683.3 447 79.4
CsaV3_UNG172360 Cucumis sativus L. HOM05D004035 ORTHO05D004631 4.0e-194 681.8 448 78.1
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 4.0e-194 681.8 448 77.5
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 4.0e-194 681.8 448 77.2
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 4.0e-194 681.8 448 77.9
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 8.8e-194 680.6 448 77.7
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 2.0e-193 679.5 448 79.0
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 5.7e-193 677.9 448 77.7
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 3.7e-192 675.2 448 78.3
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 1.2e-190 670.2 448 76.8
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 5.9e-190 667.9 448 77.7
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 2.9e-189 665.6 448 77.7
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 2.9e-189 665.6 448 78.3
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 5.0e-189 664.8 448 77.5
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 1.9e-188 662.9 448 76.3
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 2.5e-188 662.5 448 76.6
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 1.2e-187 660.2 448 76.6
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 3.6e-187 658.7 448 77.2
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 1.2e-185 653.7 448 75.4
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 1.2e-185 653.7 448 76.1
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 3.4e-185 652.1 448 75.7
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 5.7e-185 651.4 448 76.3
PGSC0003DMG400003507 Solanum tuberosum HOM05D004035 ORTHO05D004631 1.7e-184 649.8 448 75.7
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 6.3e-184 647.9 448 75.2
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 5.4e-183 644.8 448 75.2
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 9.2e-183 644.0 451 76.7
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 1.3e-181 640.2 448 74.3
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 1.7e-181 639.8 448 74.3
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 3.8e-181 638.6 448 73.7
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 1.5e-180 636.7 448 74.3
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 1.9e-180 636.3 448 74.3
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 4.3e-180 635.2 448 73.9
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 5.6e-180 634.8 448 73.4
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 4.7e-179 631.7 448 73.2
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 4.0e-178 628.6 470 70.9
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 5.7e-177 624.8 447 72.3
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 9.8e-177 624.0 443 73.1
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 2.2e-176 622.9 448 72.1
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 3.7e-176 622.1 469 69.7
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 1.8e-175 619.8 448 73.0
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 1.8e-175 619.8 447 72.0
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 2.4e-175 619.4 448 71.2
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 2.0e-174 616.3 448 72.3
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 5.9e-174 614.8 448 72.1
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 7.8e-174 614.4 450 71.6
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 3.9e-173 612.1 449 71.5
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 6.6e-173 611.3 455 72.1
MBI07_g11484_MAGBIO Magnolia biondii HOM05D004035 ORTHO05D004631 6.6e-173 611.3 448 73.7
Oeu042264.1 Olea europaea HOM05D004035 ORTHO05D004631 4.3e-172 608.6 465 71.4
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 8.0e-171 604.4 448 69.4
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 1.8e-170 603.2 447 69.1
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 3.1e-170 602.4 450 71.3
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 3.1e-170 602.4 448 70.1
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 4.0e-170 602.1 447 70.2
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 5.2e-170 601.7 448 69.2
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 4.4e-169 598.6 447 71.6
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 9.8e-169 597.4 447 69.1
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 9.8e-169 597.4 447 69.1
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 1.7e-168 596.7 450 70.7
Thecc.01G035900 Theobroma cacao HOM05D004035 ORTHO05D004631 1.7e-168 596.7 402 77.1
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 2.9e-168 595.9 450 70.0
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 2.9e-168 595.9 446 69.3
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 3.7e-168 595.5 448 69.2
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 1.9e-167 593.2 450 69.8
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 3.2e-167 592.4 450 70.0
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 4.1e-167 592.0 451 70.3
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 5.4e-167 591.7 451 70.3
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 1.6e-166 590.1 451 70.3
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 3.5e-166 589.0 450 69.3
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 6.0e-166 588.2 451 70.1
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 1.7e-165 586.6 466 65.9
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 1.4e-162 577.0 448 67.4
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 1.5e-161 573.5 448 67.0
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 3.4e-161 572.4 438 68.7
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 1.3e-160 570.5 403 73.0
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 4.6e-158 562.0 447 66.7
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.0e-157 560.8 448 66.7
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 1.5e-156 557.0 449 64.4
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 5.6e-156 555.1 428 69.4
Cpa.g.sc1294.1 Carica papaya HOM05D004035 ORTHO05D004631 2.3e-154 549.7 394 73.4
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 8.9e-154 547.7 449 65.0
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 2.6e-153 546.2 446 63.2
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 9.9e-153 544.3 449 63.7
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 1.2e-150 537.3 448 61.8
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 6.0e-150 535.0 455 64.4
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 1.8e-146 523.5 449 63.0
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 4.4e-145 518.8 449 61.7
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 1.6e-139 500.4 349 74.2
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 1.6e-134 483.8 449 59.7
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 2.1e-134 483.4 448 60.5
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 3.5e-134 482.6 449 59.2
CAN.G358.86 Capsicum annuum HOM05D004035 ORTHO05D004631 1.3e-131 474.2 452 60.0
SEGI_13313 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 6.0e-126 455.3 469 55.0
CsaV3_4G004990 Cucumis sativus L. HOM05D004035 ORTHO05D004631 6.9e-106 388.7 242 80.6
PGSC0003DMG400027646 Solanum tuberosum HOM05D004035 ORTHO05D004631 1.9e-103 380.6 268 74.3
A08p22280 Brassica napus HOM05D004035 ORTHO05D004631 6.9e-98 362.1 251 71.3
BraA08t34187Z Brassica rapa HOM05D004035 ORTHO05D004631 6.9e-98 362.1 251 71.3
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 8.5e-96 355.1 451 45.5
AagrBONN_evm.TU.Sc2ySwM_340.480 Anthoceros agrestis HOM05D004035 ORTHO05D004631 3.2e-95 353.2 457 45.5
HPP92_004247 Vanilla planifolia HOM05D004035 ORTHO05D004631 7.2e-95 352.1 403 52.4
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 2.4e-90 337.0 466 44.2
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 3.8e-88 329.7 215 77.2
BolC3t20257H Brassica oleracea HOM05D004035 ORTHO05D004631 1.8e-82 310.8 345 53.9
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 2.4e-82 310.5 345 53.6
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 5.5e-71 272.7 454 37.9
CsaV3_4G004980 Cucumis sativus L. HOM05D004035 ORTHO05D004631 2.4e-50 204.1 194 60.3
TPR.G13595 Trifolium pratense HOM05D004035 ORTHO05D004631 3.8e-35 153.7 145 61.4
TPR.G13585 Trifolium pratense HOM05D004035 ORTHO05D004631 2.4e-29 134.4 240 40.8
SHI32100 Sapria himalayana HOM05D004035 ORTHO05D000001 1.3e-27 128.6 83 72.3
Oeu033646.1 Olea europaea HOM05D004035 ORTHO05D004631 3.8e-27 127.1 263 36.5
ATR0800G151 Amborella trichopoda HOM05D004035 ORTHO05D004631 8.4e-27 125.9 195 40.5
Oeu009413.1 Olea europaea HOM05D004035 ORTHO05D004631 1.6e-25 121.7 330 32.7
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 4.8e-22 110.2 828 21.4
C03p80040 Brassica napus HOM05D004035 ORTHO05D004631 1.4e-18 98.6 102 54.9
BolC3t20258H Brassica oleracea HOM05D004035 ORTHO05D004631 1.4e-18 98.6 102 54.9
Duzib264G0986 Durio zibethinus HOM05D004035 ORTHO05D004631 1.5e-12 78.6 45 84.4
Cre06.g278124 Chlamydomonas reinhardtii HOM05D004035 ORTHO05D004631 4.5e-12 77.0 124 35.5
Zm00001eb267510 Zea mays HOM05D005380 ORTHO05D006601 5.1e-08 63.5 172 25.6
PRCOL_00006719 Prasinoderma coloniale HOM05D004035 ORTHO05D004631 3.3e-07 60.8 129 29.5
MD10G1238900 Malus domestica HOM05D005380 ORTHO05D006601 5.6e-07 60.1 417 20.1
Cpa.g.sc1294.3 Carica papaya HOM05D004035 ORTHO05D004631 1.3e-06 58.9 39 74.4
Os05g0104100 Oryza sativa ssp. japonica HOM05D005380 ORTHO05D006601 1.3e-06 58.9 307 21.8
ATR0743G092 Amborella trichopoda HOM05D005380 ORTHO05D006601 1.6e-06 58.5 291 21.6
Prupe.4G105500 Prunus persica HOM05D005380 ORTHO05D006601 2.1e-06 58.2 417 19.4
Gorai.011G051400 Gossypium raimondii HOM05D005380 ORTHO05D006601 3.7e-06 57.4 308 20.8
MD05G1259300 Malus domestica HOM05D005380 ORTHO05D006601 3.7e-06 57.4 417 19.7
Dinv01434 Davidia involucrata HOM05D005380 ORTHO05D006601 4.8e-06 57.0 303 21.5


User provided reference genes

Program Settings