Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 2101.6 1053 100.0
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1984.9 1054 94.3
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1965.3 1073 92.4
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1964.9 1073 92.4
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1869.0 1063 89.4
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1773.4 1053 83.6
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1745.3 1054 82.1
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1694.9 1141 75.9
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1649.4 1055 77.3
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1649.0 1055 77.3
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1637.5 1058 77.7
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1631.3 1055 76.6
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1629.8 1054 75.9
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1627.8 1057 77.0
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1627.1 1055 76.6
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1622.4 1059 75.2
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1619.4 1057 76.7
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1617.8 1053 77.1
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1613.6 1059 75.0
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1611.7 1055 76.1
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1603.6 1056 75.5
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1602.4 1058 75.4
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1598.9 1057 75.1
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1598.6 1055 75.5
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1598.2 1054 75.0
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1584.7 1121 71.6
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1568.9 1056 73.9
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1568.1 1056 72.9
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1566.6 1053 74.0
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1552.0 1055 74.6
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1550.8 1054 73.9
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1545.0 1055 74.4
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1545.0 1062 73.0
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1543.9 1058 72.6
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1542.7 1055 72.5
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1542.3 1059 72.0
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1537.3 1056 72.7
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1536.9 1056 72.3
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1536.2 1055 73.6
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1535.8 1055 73.3
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1535.0 1057 72.8
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1532.3 1062 72.8
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1531.2 1062 72.8
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1529.6 1058 72.1
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1529.2 1058 72.0
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1528.1 1039 74.5
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1526.1 1061 72.4
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1525.0 1147 68.6
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1524.6 1056 72.1
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1523.8 1041 72.0
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1516.9 1055 71.5
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1515.0 1053 71.6
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1514.2 1053 71.8
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1513.0 1059 71.8
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1506.5 1059 71.2
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1505.3 1057 71.7
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1505.0 1053 71.1
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1499.6 1041 72.2
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1496.1 1055 69.8
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1493.0 1053 69.8
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1491.5 960 77.3
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1488.8 1056 70.3
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1487.6 1054 70.3
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1485.3 1054 71.6
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1478.8 1095 68.9
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1477.6 1053 70.3
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1474.5 1054 71.3
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1473.4 1055 71.0
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1473.0 1053 70.0
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1471.1 1133 67.1
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1470.7 979 74.4
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1468.0 1051 69.4
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1464.9 1055 69.9
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1464.1 1061 69.7
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1461.8 1265 60.6
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1455.3 1055 68.8
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1453.0 1055 68.9
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1451.0 1056 68.5
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1444.1 1066 68.3
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1434.1 1054 67.8
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1427.5 1056 67.8
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1411.0 1054 68.8
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1393.6 1064 66.4
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1389.4 1060 65.8
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1386.3 948 73.5
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1377.1 1063 65.8
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1298.5 856 75.7
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1295.0 845 76.4
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1284.2 1055 62.6
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1246.9 852 73.2
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1246.5 801 77.5
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1129.0 789 70.8
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1109.7 959 61.5
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1107.8 1076 54.0
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 9.3e-310 1067.0 790 68.4
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 2.5e-307 1058.9 1066 52.8
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 4.3e-291 1005.0 1069 50.8
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 5.5e-270 934.9 777 61.6
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 6.1e-269 931.4 951 55.5
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 5.3e-265 918.3 631 72.6
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 2.0e-243 846.7 661 65.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.3e-236 823.2 518 77.6
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 2.0e-235 820.1 517 76.6
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 1.0e-215 754.6 448 79.5
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.7e-215 753.8 448 79.2
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.0e-215 753.1 695 57.4
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 2.5e-214 750.0 451 79.2
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.1e-209 734.6 470 74.3
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.6e-208 730.7 471 74.3
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 3.3e-206 723.0 448 76.1
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 1.8e-204 717.2 496 69.8
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.5e-203 714.1 446 75.6
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 3.4e-203 713.0 450 76.4
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.6e-197 694.1 459 72.5
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 2.9e-194 683.3 450 73.6
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 9.6e-190 668.3 465 69.9
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.5e-171 607.8 450 66.9
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 5.0e-170 602.8 428 68.7
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.1e-169 601.7 448 67.2
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 4.6e-168 596.3 448 65.6
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 7.2e-161 572.4 400 71.2
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.8e-156 557.8 366 73.5
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 4.1e-156 556.6 364 73.4
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.7e-149 533.5 405 65.9
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 4.1e-148 530.0 613 48.9
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 2.6e-142 510.8 1114 31.9
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 2.4e-124 451.1 267 80.5
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 5.2e-119 433.3 248 85.5
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 5.0e-114 416.8 213 95.8
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 6.6e-114 416.4 286 72.0
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.1e-112 411.4 271 75.3
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 6.0e-107 393.3 266 74.4
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 6.8e-103 379.8 236 80.1
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.2e-102 379.0 243 75.7
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 3.5e-99 367.5 318 60.4
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 7.4e-73 280.0 156 84.0
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 6.7e-66 256.9 157 84.1
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 1.3e-61 242.7 179 73.7
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 5.0e-61 240.7 210 57.1
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 2.5e-60 238.4 286 46.2
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 9.7e-57 226.5 206 57.3
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 6.3e-48 197.2 179 63.1
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.1e-47 194.9 156 62.2
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 6.5e-45 187.2 123 72.4
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 8.8e-42 176.8 110 82.7
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 5.0e-37 161.0 96 82.3
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 1.4e-34 152.9 97 81.4
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.4e-34 152.9 96 79.2
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 2.8e-32 145.2 137 51.8
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.8e-31 142.5 137 51.8
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 5.3e-31 141.0 75 94.7
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 6.5e-29 134.0 106 64.2
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 2.5e-28 132.1 83 71.1
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 4.7e-27 127.9 85 69.4
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 6.5e-21 107.5 55 87.3
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 5.2e-18 97.8 81 53.1
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 6.3e-16 90.9 54 68.5
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 1.4e-15 89.7 81 56.8
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 2.4e-15 89.0 58 65.5
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 2.4e-15 89.0 61 70.5
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 3.1e-15 88.6 77 59.7
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 3.8e-13 81.6 72 61.1
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.0e-13 81.3 72 59.7
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 4.3e-12 78.2 53 73.6
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 1.4e-10 73.2 41 80.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.0e-09 69.3 72 52.8
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 7.5e-09 67.4 41 78.0
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 3.2e-07 62.0 44 68.2
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 2.0e-06 59.3 48 64.6
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.5e-06 58.5 58 50.0


User provided reference genes

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