Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.5e-171 606.3 353 100.0
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.4e-161 571.2 321 92.5
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.0e-160 569.3 321 92.2
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.0e-160 569.3 321 92.2
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.0e-159 567.0 321 91.9
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 1.7e-159 566.2 321 91.9
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.8e-133 479.2 313 78.9
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 4.7e-133 478.4 321 76.6
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 3.1e-132 475.7 321 76.9
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 4.0e-124 448.7 310 75.5
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 8.9e-124 447.6 314 74.2
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 2.0e-123 446.4 303 75.9
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 4.2e-121 438.7 319 73.0
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 7.1e-121 438.0 315 72.7
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.1e-120 436.4 310 73.2
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.3e-119 433.7 303 73.6
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 3.0e-119 432.6 314 72.0
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.1e-118 430.6 318 70.1
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.9e-118 429.9 325 68.0
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.6e-118 428.3 325 67.4
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 9.6e-118 427.6 317 68.8
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 1.3e-117 427.2 315 71.7
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.6e-117 426.8 311 69.5
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.6e-117 426.8 314 70.7
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 6.2e-117 424.9 324 67.3
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.1e-117 424.5 326 67.8
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.4e-116 423.7 308 71.4
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 4.0e-116 422.2 315 67.9
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 4.0e-116 422.2 319 68.0
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 4.0e-116 422.2 316 70.9
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 2.0e-115 419.9 308 69.8
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 2.6e-115 419.5 324 67.3
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 3.4e-115 419.1 316 70.6
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 5.8e-115 418.3 315 69.5
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.3e-114 417.2 321 67.6
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 4.9e-114 415.2 317 67.2
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 6.4e-114 414.8 314 70.7
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 8.4e-114 414.5 315 69.8
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.1e-113 414.1 311 69.1
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.9e-113 413.3 316 70.3
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 2.4e-113 412.9 327 65.4
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.4e-113 412.9 315 68.3
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 7.1e-113 411.4 314 69.1
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.1e-112 409.8 315 67.9
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 2.7e-112 409.5 314 67.8
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 4.6e-112 408.7 315 69.2
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.0e-111 407.5 293 70.0
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.8e-111 406.8 322 67.4
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 3.0e-111 406.0 304 69.4
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 3.0e-111 406.0 294 70.7
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 3.9e-111 405.6 317 68.8
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 8.7e-111 404.4 321 65.1
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.1e-110 404.1 311 68.2
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 1.9e-110 403.3 321 64.8
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 2.5e-110 402.9 321 64.8
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 5.6e-110 401.7 296 70.3
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 7.4e-110 401.4 318 65.7
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.6e-109 400.2 316 66.8
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.1e-109 399.8 316 65.5
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 6.2e-109 398.3 312 66.0
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 8.1e-109 397.9 286 70.3
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 8.1e-109 397.9 320 65.9
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.1e-108 397.5 292 69.9
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.8e-108 396.7 317 64.0
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 3.1e-108 396.0 321 64.2
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 4.0e-108 395.6 296 68.9
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.2e-107 394.0 320 64.1
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 2.0e-107 393.3 304 67.1
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.6e-107 392.9 289 68.5
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 4.5e-107 392.1 306 66.0
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 5.8e-107 391.7 314 65.9
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 5.8e-107 391.7 322 63.4
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 7.6e-107 391.3 310 65.5
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 7.6e-107 391.3 291 70.1
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.3e-106 390.6 315 66.0
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 1.3e-106 390.6 348 61.8
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.3e-106 390.6 317 65.6
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.7e-106 390.2 317 66.9
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 4.9e-106 388.7 292 69.5
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 6.4e-106 388.3 327 62.4
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 8.4e-106 387.9 287 68.3
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.1e-105 387.5 320 62.8
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-105 387.5 309 64.4
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.1e-105 387.5 309 64.4
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 1.4e-105 387.1 319 62.1
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 1.4e-105 387.1 321 62.0
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 3.2e-105 386.0 336 61.6
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 4.2e-105 385.6 317 62.1
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 4.2e-105 385.6 319 63.3
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 7.1e-105 384.8 316 63.9
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.6e-104 383.6 301 67.8
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 2.1e-104 383.3 309 63.8
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 3.5e-104 382.5 309 63.4
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 3.5e-104 382.5 309 63.4
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 3.5e-104 382.5 320 62.5
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 6.0e-104 381.7 298 68.5
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 1.8e-103 380.2 304 64.8
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.3e-103 379.8 304 64.8
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 3.0e-103 379.4 316 63.0
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 2.5e-102 376.3 316 62.7
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 3.3e-102 375.9 316 62.3
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 4.3e-102 375.6 323 63.2
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 5.6e-102 375.2 307 63.5
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 9.6e-102 374.4 316 62.3
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.3e-101 374.0 317 62.1
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.8e-101 372.1 286 66.8
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.4e-100 370.5 313 62.6
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.1e-100 369.4 305 65.9
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 9.0e-100 367.9 382 55.2
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 1.2e-99 367.5 321 61.4
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 4.5e-99 365.5 335 58.5
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 4.5e-99 365.5 306 65.4
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 2.2e-98 363.2 296 64.2
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 2.9e-98 362.8 321 60.4
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 8.4e-98 361.3 285 63.9
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.9e-97 360.1 259 69.5
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 3.2e-97 359.4 288 64.2
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 1.2e-96 357.5 317 58.7
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 2.5e-94 349.7 331 58.0
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 4.3e-94 349.0 316 58.5
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 7.4e-94 348.2 337 59.6
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 9.6e-94 347.8 395 49.4
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.9e-91 338.6 383 51.7
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 2.9e-90 336.3 317 57.7
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 1.9e-89 333.6 332 58.1
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 2.8e-85 319.7 318 53.8
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 9.1e-84 314.7 321 56.1
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.2e-80 304.3 313 54.3
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 2.7e-80 303.1 315 54.3
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 8.8e-79 298.1 314 53.5
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 4.4e-78 295.8 298 53.4
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 2.8e-77 293.1 309 53.4
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.0e-75 287.0 300 53.7
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 5.9e-75 285.4 298 52.3
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 1.9e-73 280.4 316 50.3
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 2.0e-70 270.4 308 50.0
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 3.1e-68 263.1 309 48.2
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 3.5e-67 259.6 252 53.6
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 8.0e-64 248.4 180 71.1
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 3.0e-63 246.5 270 50.4
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 3.3e-62 243.0 220 60.5
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 1.3e-61 241.1 255 52.9
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 3.5e-59 233.0 318 47.2
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 8.0e-56 221.9 170 66.5
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 4.0e-55 219.5 236 53.0
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 4.8e-53 212.6 150 66.7
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.0e-47 194.9 129 77.5
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 5.2e-47 192.6 174 60.9
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.7e-46 189.1 179 60.3
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 6.8e-39 165.6 161 62.7
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.5e-38 164.5 267 40.1
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.9e-29 133.7 159 55.3
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 4.1e-28 129.8 137 54.7
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 5.4e-28 129.4 109 62.4
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 7.8e-27 125.6 314 33.1
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 2.3e-26 124.0 301 31.9
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.8e-23 112.5 79 64.6
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 9.9e-22 108.6 82 67.1
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 6.0e-19 99.4 67 73.1
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.3e-18 98.2 99 55.6
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.4e-12 78.2 89 47.2
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 9.6e-09 65.5 61 57.4
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 2.8e-08 63.9 38 86.8
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 3.6e-08 63.5 43 67.4
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.1e-07 62.0 52 51.9
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 2.0e-06 57.8 52 50.0
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 5.8e-06 56.2 73 46.6
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 9.9e-06 55.5 42 61.9
RcHm_v2.0_Chr5g0046261 Rosa chinensis HOM05D000065 ORTHO05D344010 9.9e-06 55.5 31 80.6


User provided reference genes

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