Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384241 Rosa chinensis HOM05D004758 ORTHO05D006063 1.1e-81 307.0 215 100.0
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 6.6e-61 238.0 206 89.3
FAN01G1935 Fragaria x ananassa HOM05D004758 ORTHO05D006063 4.0e-58 228.8 214 83.2
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 4.1e-55 218.8 210 72.4
arahy.Tifrunner.gnm1.ann1.MVA0XP Arachis hypogaea HOM05D004758 ORTHO05D006063 5.9e-54 214.9 218 78.4
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 1.0e-53 214.2 211 70.6
Lalb_Chr13g0297791 Lupinus albus HOM05D004758 ORTHO05D006063 1.3e-53 213.8 218 77.5
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 1.7e-53 213.4 211 67.8
Psat4g058120 Pisum sativum HOM05D004758 ORTHO05D006063 3.9e-53 212.2 217 75.6
Sed0006906 Sechium edule HOM05D004758 ORTHO05D006063 3.9e-53 212.2 211 69.7
ClCG09G017100 Citrullus lanatus HOM05D004758 ORTHO05D006063 5.0e-53 211.8 211 70.1
TAR375G0794 Trochodendron aralioides HOM05D004758 ORTHO05D006063 8.6e-53 211.1 210 67.6
Gohir.A13G156800 Gossypium hirsutum HOM05D004758 ORTHO05D006063 2.5e-52 209.5 210 70.0
Lalb_Chr12g0201611 Lupinus albus HOM05D004758 ORTHO05D006063 3.3e-52 209.1 218 76.6
Ca_21920_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 1.2e-51 207.2 217 74.7
Lj4g0021664 Lotus japonicus HOM05D004758 ORTHO05D006063 1.6e-51 206.8 217 76.5
THA.LOC104827198 Tarenaya hassleriana HOM05D004758 ORTHO05D006063 1.6e-51 206.8 214 68.2
VMungo1215G2684 Vigna mungo HOM05D004758 ORTHO05D006063 2.8e-51 206.1 217 71.4
Glyma.17G089100 Glycine max HOM05D004758 ORTHO05D006063 3.6e-51 205.7 217 71.0
MELO3C002835.2 Cucumis melo HOM05D004758 ORTHO05D006063 1.0e-50 204.1 207 70.0
Glyma.05G038000 Glycine max HOM05D004758 ORTHO05D006063 2.3e-50 203.0 217 72.8
Phvul.003G200800 Phaseolus vulgaris HOM05D004758 ORTHO05D006063 2.3e-50 203.0 217 74.7
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 3.1e-50 202.6 214 67.8
Medtr4g105700 Medicago truncatula HOM05D004758 ORTHO05D006063 8.9e-50 201.1 217 72.8
ECA236G2519 Erigeron canadensis HOM05D004758 ORTHO05D006063 1.2e-49 200.7 210 67.6
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 1.5e-49 200.3 210 71.4
ATR0829G002 Amborella trichopoda HOM05D004758 ORTHO05D006063 1.5e-49 200.3 210 64.8
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 1.5e-49 200.3 214 69.6
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 1.5e-49 200.3 214 72.0
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 1.5e-49 200.3 214 68.2
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 1.5e-49 200.3 214 69.6
CsaV3_1G037130 Cucumis sativus L. HOM05D004758 ORTHO05D006063 2.0e-49 199.9 205 69.8
Potri.013G079600 Populus trichocarpa HOM05D004758 ORTHO05D006063 2.0e-49 199.9 211 66.8
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 3.4e-49 199.1 214 71.5
TWI09G0087 Tripterygium wilfordii HOM05D004758 ORTHO05D006063 3.4e-49 199.1 210 66.7
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 4.4e-49 198.7 214 71.5
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 4.4e-49 198.7 214 66.8
COL.COLO4_37813 Corchorus olitorius HOM05D004758 ORTHO05D006063 5.8e-49 198.4 217 65.0
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 7.5e-49 198.0 214 71.0
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 9.8e-49 197.6 214 67.8
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 1.3e-48 197.2 214 66.8
C09p60320 Brassica napus HOM05D004758 ORTHO05D006063 1.7e-48 196.8 214 71.0
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 2.2e-48 196.4 214 65.9
AT5G16750 Arabidopsis thaliana HOM05D004758 ORTHO05D006063 2.2e-48 196.4 214 66.4
C02p08570 Brassica napus HOM05D004758 ORTHO05D006063 2.9e-48 196.1 214 67.8
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 3.7e-48 195.7 209 68.4
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 3.7e-48 195.7 210 72.4
vmacro06528 Vaccinium macrocarpon HOM05D004758 ORTHO05D006063 6.4e-48 194.9 211 70.6
Sc02g0003740 Simmondsia chinensis HOM05D004758 ORTHO05D006063 1.4e-47 193.7 210 68.6
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 2.4e-47 193.0 214 65.9
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 2.4e-47 193.0 209 58.4
Gohir.D13G161600 Gossypium hirsutum HOM05D004758 ORTHO05D006063 3.2e-47 192.6 210 71.9
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 7.0e-47 191.4 210 71.9
Cfa016059 Carpinus fangiana HOM05D004758 ORTHO05D006063 7.8e-46 188.0 210 61.4
arahy.Tifrunner.gnm1.ann1.64XA74 Arachis hypogaea HOM05D004758 ORTHO05D006063 1.3e-45 187.2 203 75.9
Prupe.2G326400 Prunus persica HOM05D004758 ORTHO05D006063 1.3e-45 187.2 214 71.0
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 8.6e-45 184.5 214 75.2
Hund26668 Selenicereus undatus HOM05D004758 ORTHO05D006063 1.1e-44 184.1 211 67.8
Haze_00389 Corylus avellana HOM05D004758 ORTHO05D006063 4.3e-44 182.2 210 62.4
HPP92_020800 Vanilla planifolia HOM05D004758 ORTHO05D006063 7.3e-44 181.4 208 58.2
MD07G1309100 Malus domestica HOM05D004758 ORTHO05D006063 9.5e-44 181.0 214 70.6
MD01G1236400 Malus domestica HOM05D004758 ORTHO05D006063 4.7e-43 178.7 208 71.6
Nn1g00147 Nelumbo nucifera HOM05D004758 ORTHO05D006063 1.4e-42 177.2 210 60.0
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 1.8e-42 176.8 210 66.2
Lsat_1_v5_gn_7_26400 Lactuca sativa HOM05D004758 ORTHO05D006063 1.8e-42 176.8 194 64.9
Atru.chr10.1076 Acer truncatum HOM05D004758 ORTHO05D006063 3.1e-42 176.0 210 62.9
Aa31LG11G12810 Aethionema arabicum HOM05D004758 ORTHO05D006063 1.5e-41 173.7 211 49.8
SEGI_30407 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 2.6e-41 172.9 210 59.0
CANSAT21G1832 Cannabis sativa HOM05D004758 ORTHO05D006063 5.8e-41 171.8 104 76.0
CiPaw.05G215200 Carya illinoinensis HOM05D004758 ORTHO05D006063 5.8e-41 171.8 208 62.5
FAN03G1445 Fragaria x ananassa HOM05D004758 ORTHO05D006063 2.2e-40 169.9 214 72.4
TPR.G37444 Trifolium pratense HOM05D004758 ORTHO05D006063 2.2e-40 169.9 217 68.2
QL09p022998 Quercus lobata HOM05D004758 ORTHO05D006063 8.3e-40 167.9 210 59.0
GSVIVG01024351001 Vitis vinifera HOM05D004758 ORTHO05D006063 4.6e-38 162.2 213 57.3
COL.COLO4_14499 Corchorus olitorius HOM05D004758 ORTHO05D006063 7.8e-38 161.4 216 61.1
Hma1.2p1_0419F.1_g149420 Hydrangea macrophylla HOM05D004758 ORTHO05D006063 7.8e-38 161.4 210 64.3
Ah.05g168380 Amaranthus hybridus HOM05D004758 ORTHO05D006063 1.0e-37 161.0 211 63.0
Ciclev10018804m.g Citrus clementina HOM05D004758 ORTHO05D006063 5.1e-37 158.7 200 71.5
Cc08_g01710 Coffea canephora HOM05D004758 ORTHO05D006063 5.1e-37 158.7 212 54.7
MD01G1069700 Malus domestica HOM05D004758 ORTHO05D000275 1.1e-36 157.5 102 72.5
CDE06G0148 Ceratophyllum demersum HOM05D004758 ORTHO05D006063 1.5e-36 157.1 210 62.4
SalBow4G2121 Salvia bowleyana HOM05D004758 ORTHO05D006063 7.3e-36 154.8 207 63.3
SalBow4G2875 Salvia bowleyana HOM05D004758 ORTHO05D006063 7.3e-36 154.8 207 63.3
AUR62026609 Chenopodium quinoa HOM05D004758 ORTHO05D006063 1.2e-35 154.1 210 43.8
Oeu038086.1 Olea europaea HOM05D004758 ORTHO05D006063 4.7e-35 152.1 209 60.8
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 8.1e-35 151.4 105 69.5
BcaNung04954 Brassica carinata HOM05D004758 ORTHO05D006063 1.8e-34 150.2 99 72.7
Aqoxy3G02274 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 4.0e-34 149.1 204 56.4
Eucgr.K00076 Eucalyptus grandis HOM05D004758 ORTHO05D006063 4.0e-34 149.1 103 69.9
SHI02547 Sapria himalayana HOM05D004758 ORTHO05D006063 4.0e-34 149.1 99 70.7
Aqoxy5G01707 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 5.2e-34 148.7 204 57.4
unitig_748.g6995 Utricularia gibba HOM05D004758 ORTHO05D006063 6.8e-34 148.3 101 67.3
Dinv29141 Davidia involucrata HOM05D004758 ORTHO05D006063 1.5e-33 147.1 210 61.4
MBI04_g20348_MAGBIO Magnolia biondii HOM05D004758 ORTHO05D006063 2.6e-33 146.4 194 44.3
Migut.F00084 Erythranthe guttata HOM05D004758 ORTHO05D006063 1.3e-32 144.1 209 49.8
Lj3C885T17 Lonicera japonica HOM05D004758 ORTHO05D006063 8.4e-32 141.4 97 71.1
SGA_v2.0_scaffold18G08524 Striga asiatica HOM05D004758 ORTHO05D006063 1.1e-31 141.0 93 71.0
EL10Ac1g01635 Beta vulgaris HOM05D004758 ORTHO05D006063 3.5e-30 136.0 191 42.9
Nitab4.5_0000108g0370 Nicotiana tabacum HOM05D004758 ORTHO05D006063 6.0e-30 135.2 102 59.8
Solyc03g097160.4 Solanum lycopersicum HOM05D004758 ORTHO05D006063 1.3e-29 134.0 210 57.6
CAN.G1131.26 Capsicum annuum HOM05D004758 ORTHO05D006063 6.6e-29 131.7 95 65.3
Peaxi162Scf00516g00672 Petunia axillaris HOM05D004758 ORTHO05D006063 7.3e-28 128.3 194 59.3
MSTRG.26923 Avicennia marina HOM05D004758 ORTHO05D006063 2.8e-27 126.3 98 61.2
CSS0042937 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 2.8e-27 126.3 150 68.7
Zm00001eb072270 Zea mays HOM05D004758 ORTHO05D006063 1.1e-26 124.4 217 54.4
Zm00001eb429930 Zea mays HOM05D004758 ORTHO05D006063 1.1e-26 124.4 216 55.1
Os04g0592700 Oryza sativa ssp. japonica HOM05D004758 ORTHO05D006063 6.9e-26 121.7 225 53.8
PSO782G4173 Papaver somniferum HOM05D004758 ORTHO05D006063 5.8e-25 118.6 88 70.5
PSO063G1271 Papaver somniferum HOM05D004758 ORTHO05D006063 3.8e-24 115.9 88 69.3
Nitab4.5_0004530g0070 Nicotiana tabacum HOM05D004758 ORTHO05D006063 1.4e-23 114.0 87 63.2
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 2.4e-23 113.2 210 44.3
AUR62013586 Chenopodium quinoa HOM05D004758 ORTHO05D006063 3.5e-22 109.4 85 62.4
Sopen03g027900 Solanum pennellii HOM05D004758 ORTHO05D006063 4.6e-22 109.0 84 63.1
Nitab4.5_0000021g0710 Nicotiana tabacum HOM05D004758 ORTHO05D006063 2.3e-21 106.7 84 61.9
CBR_g29896 Chara braunii HOM05D004758 ORTHO05D006063 3.9e-21 105.9 101 48.5
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 2.5e-20 103.2 209 50.2
Cre07.g344050 Chlamydomonas reinhardtii HOM05D004758 ORTHO05D006063 3.9e-13 79.3 247 27.5
Mapoly0155s0010 Marchantia polymorpha HOM05D004758 ORTHO05D006063 3.1e-10 69.7 84 42.9
AUR62013587 Chenopodium quinoa HOM05D004758 ORTHO05D006063 2.6e-09 66.6 145 34.5
MCO16G091 Micromonas commoda HOM05D004758 ORTHO05D006063 4.5e-09 65.9 190 45.8
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 2.2e-08 63.5 179 26.8
Ca_21929_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 7.1e-07 58.5 58 58.6
AL1G37940 Arabidopsis lyrata HOM05D000453 ORTHO05D000387 7.9e-06 55.1 157 26.8


User provided reference genes

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