Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384071 Rosa chinensis HOM05D003872 ORTHO05D004592 1.1e-76 290.0 161 100.0
RcHm_v2.0_Chr1g0384051 Rosa chinensis HOM05D003872 ORTHO05D004592 4.1e-76 288.1 161 99.4
FvH4_7g33880 Fragaria vesca HOM05D003872 ORTHO05D004592 3.6e-56 221.9 163 74.8
FAN03G3493 Fragaria x ananassa HOM05D003872 ORTHO05D004592 8.1e-56 220.7 163 74.2
FAN10G4058 Fragaria x ananassa HOM05D003872 ORTHO05D004592 1.1e-55 220.3 162 74.7
FAN01G2295 Fragaria x ananassa HOM05D003872 ORTHO05D004592 1.2e-46 190.3 176 64.2
MD07G1308100 Malus domestica HOM05D003872 ORTHO05D004592 1.9e-41 172.9 174 61.5
Prupe.2G325300 Prunus persica HOM05D003872 ORTHO05D004592 1.3e-40 170.2 167 59.9
MD01G1235300 Malus domestica HOM05D003872 ORTHO05D004592 8.2e-40 167.5 174 62.1
Prupe.6G242100 Prunus persica HOM05D003872 ORTHO05D004592 7.6e-38 161.0 170 58.2
QL09p024519 Quercus lobata HOM05D003872 ORTHO05D004592 8.7e-34 147.5 172 53.5
Haze_00615 Corylus avellana HOM05D003872 ORTHO05D004592 9.7e-33 144.1 178 51.7
Cfa015874 Carpinus fangiana HOM05D003872 ORTHO05D004592 4.8e-32 141.7 171 52.6
CiPaw.06G019100 Carya illinoinensis HOM05D003872 ORTHO05D004592 1.0e-29 134.0 177 49.7
COL.COLO4_25305 Corchorus olitorius HOM05D003872 ORTHO05D004592 4.2e-28 128.6 164 50.0
TAR374G1229 Trochodendron aralioides HOM05D003872 ORTHO05D004592 2.3e-26 122.9 185 42.2
Manes.09G124700 Manihot esculenta HOM05D003872 ORTHO05D004592 6.7e-26 121.3 168 44.6
Duzib168G0937 Durio zibethinus HOM05D003872 ORTHO05D004592 2.5e-25 119.4 164 55.5
Thecc.09G264400 Theobroma cacao HOM05D003872 ORTHO05D004592 3.3e-25 119.0 163 49.7
Sed0014695 Sechium edule HOM05D003872 ORTHO05D004592 4.3e-25 118.6 159 49.1
Duzib150G0049 Durio zibethinus HOM05D003872 ORTHO05D004592 5.7e-25 118.2 171 48.5
Duzib170G1103 Durio zibethinus HOM05D003872 ORTHO05D004592 2.2e-24 116.3 163 46.6
Gorai.004G012200 Gossypium raimondii HOM05D003872 ORTHO05D004592 2.8e-24 115.9 165 52.1
Gohir.A08G007700 Gossypium hirsutum HOM05D003872 ORTHO05D004592 6.3e-24 114.8 162 53.1
CSS0006998 Camellia sinensis var. sinensis HOM05D003872 ORTHO05D004592 1.4e-23 113.6 171 52.0
Gohir.D08G017800 Gossypium hirsutum HOM05D003872 ORTHO05D004592 1.4e-23 113.6 165 51.5
Sabra19G0057100 Salix brachista HOM05D003872 ORTHO05D004592 4.1e-23 112.1 174 43.1
Potri.019G051500 Populus trichocarpa HOM05D003872 ORTHO05D004592 5.3e-23 111.7 174 46.0
Gorai.006G119000 Gossypium raimondii HOM05D003872 ORTHO05D004592 1.2e-22 110.5 166 48.2
Cpa.g.sc39.64 Carica papaya HOM05D003872 ORTHO05D004592 2.0e-22 109.8 170 45.3
Ciclev10019553m.g Citrus clementina HOM05D003872 ORTHO05D004592 5.9e-22 108.2 161 47.8
Nn1g01951 Nelumbo nucifera HOM05D003872 ORTHO05D004592 5.9e-22 108.2 155 41.9
Potri.013G088400 Populus trichocarpa HOM05D003872 ORTHO05D004592 1.3e-21 107.1 171 42.1
Gohir.D09G101600 Gossypium hirsutum HOM05D003872 ORTHO05D004592 1.7e-21 106.7 166 50.0
Manes.08G162800 Manihot esculenta HOM05D003872 ORTHO05D004592 2.9e-21 105.9 157 44.6
Atru.chr12.1980 Acer truncatum HOM05D003872 ORTHO05D004592 8.5e-21 104.4 160 52.5
Glyma.11G011300 Glycine max HOM05D003872 ORTHO05D004592 3.2e-20 102.4 175 43.4
Dinv29163 Davidia involucrata HOM05D003872 ORTHO05D004592 1.6e-19 100.1 110 53.6
Gohir.A09G104900 Gossypium hirsutum HOM05D003872 ORTHO05D004592 2.7e-19 99.4 166 52.4
TWI34G1659 Tripterygium wilfordii HOM05D003872 ORTHO05D004592 4.7e-19 98.6 163 42.3
Lj3A888T24 Lonicera japonica HOM05D003872 ORTHO05D004592 6.1e-19 98.2 170 49.4
Rhsim09G0212400 Rhododendron simsii HOM05D003872 ORTHO05D004592 1.4e-18 97.1 176 42.0
PSO063G1286 Papaver somniferum HOM05D003872 ORTHO05D004592 1.8e-18 96.7 166 38.0
Phvul.002G039400 Phaseolus vulgaris HOM05D003872 ORTHO05D004592 3.9e-18 95.5 169 41.4
CsaV3_2G004570 Cucumis sativus L. HOM05D003872 ORTHO05D004592 6.7e-18 94.7 164 47.6
Nn3g19322 Nelumbo nucifera HOM05D003872 ORTHO05D004592 8.8e-18 94.4 171 40.4
PSO782G2664 Papaver somniferum HOM05D003872 ORTHO05D004592 1.5e-17 93.6 166 38.0
Glyma.01G228500 Glycine max HOM05D003872 ORTHO05D004592 2.6e-17 92.8 166 43.4
MELO3C004334.2 Cucumis melo HOM05D003872 ORTHO05D004592 4.4e-17 92.0 160 47.5
Lj6g0012287 Lotus japonicus HOM05D003872 ORTHO05D004592 9.7e-17 90.9 164 40.2
LjContig00222g0027729 Lotus japonicus HOM05D003872 ORTHO05D004592 9.7e-17 90.9 164 40.2
VMungo1215G1922 Vigna mungo HOM05D003872 ORTHO05D004592 9.7e-17 90.9 160 41.9
Lalb_Chr01g0000961 Lupinus albus HOM05D003872 ORTHO05D004592 1.3e-16 90.5 175 37.7
Medtr5g007710 Medicago truncatula HOM05D003872 ORTHO05D004592 3.7e-16 89.0 168 39.3
arahy.Tifrunner.gnm1.ann1.N502YT Arachis hypogaea HOM05D003872 ORTHO05D004592 6.3e-16 88.2 123 46.3
Lalb_Chr19g0139931 Lupinus albus HOM05D003872 ORTHO05D004592 4.1e-15 85.5 165 43.0
arahy.Tifrunner.gnm1.ann1.88Y1ZI Arachis hypogaea HOM05D003872 ORTHO05D004592 6.9e-15 84.7 169 40.2
arahy.Tifrunner.gnm1.ann1.7I89AX Arachis hypogaea HOM05D003872 ORTHO05D004592 9.1e-15 84.3 169 40.8
ATR0743G218 Amborella trichopoda HOM05D003872 ORTHO05D004592 1.2e-14 84.0 189 34.4
Sed0012852 Sechium edule HOM05D003872 ORTHO05D004592 3.4e-14 82.4 116 44.8
Aqoxy5G00370 Aquilegia oxysepala HOM05D003872 ORTHO05D004592 4.5e-14 82.0 122 41.8
Ca_24443_v3 Cicer arietinum L. HOM05D003872 ORTHO05D004592 7.7e-14 81.3 156 37.8
ClCG10G009140 Citrullus lanatus HOM05D003872 ORTHO05D004592 7.7e-14 81.3 102 50.0
DCAR_020405 Daucus carota HOM05D003872 ORTHO05D004592 2.9e-13 79.3 158 38.6
THA.LOC104821768 Tarenaya hassleriana HOM05D003872 ORTHO05D004592 3.8e-13 79.0 153 41.2
Sc25g0001200 Simmondsia chinensis HOM05D003872 ORTHO05D004592 8.5e-13 77.8 154 35.1
TPR.G40787 Trifolium pratense HOM05D003872 ORTHO05D004592 2.5e-12 76.3 147 37.4
Eucgr.K00091 Eucalyptus grandis HOM05D003872 ORTHO05D004592 3.2e-12 75.9 151 39.1
GSVIVG01024416001 Vitis vinifera HOM05D003872 ORTHO05D004592 4.2e-12 75.5 162 35.8
MSTRG.13439 Avicennia marina HOM05D003872 ORTHO05D004592 7.2e-12 74.7 155 36.1
Lsat_1_v5_gn_6_9400 Lactuca sativa HOM05D003872 ORTHO05D004592 4.7e-11 72.0 109 42.2
Cc02_g00340 Coffea canephora HOM05D003872 ORTHO05D004592 6.1e-11 71.6 162 34.6
Oeu027883.1 Olea europaea HOM05D003872 ORTHO05D004592 8.0e-11 71.2 150 44.7
PGR142G0219 Punica granatum HOM05D003872 ORTHO05D004592 8.0e-11 71.2 159 34.6
MSTRG.2325 Avicennia marina HOM05D003872 ORTHO05D004592 1.8e-10 70.1 153 34.6
Solyc03g096930.4 Solanum lycopersicum HOM05D003872 ORTHO05D004592 2.3e-10 69.7 162 35.2
Sopen03g027680 Solanum pennellii HOM05D003872 ORTHO05D004592 2.3e-10 69.7 162 35.2
PGSC0003DMG402027033 Solanum tuberosum HOM05D003872 ORTHO05D004592 5.2e-10 68.6 160 35.6
ECA233G5164 Erigeron canadensis HOM05D003872 ORTHO05D004592 1.1e-09 67.4 166 35.5
Rhsim03G0221100 Rhododendron simsii HOM05D002636 ORTHO05D003490 2.6e-09 66.2 110 40.0
Peaxi162Scf00815g00355 Petunia axillaris HOM05D003872 ORTHO05D004592 3.3e-09 65.9 150 34.7
Psat7g171960 Pisum sativum HOM05D003872 ORTHO05D004592 3.3e-09 65.9 156 38.5
Sopen06g029170 Solanum pennellii HOM05D003872 ORTHO05D004592 3.3e-09 65.9 160 35.0
Lalb_Chr09g0320231 Lupinus albus HOM05D003872 ORTHO05D004592 9.7e-09 64.3 168 35.7
SGA_v2.0_scaffold287G47149 Striga asiatica HOM05D003872 ORTHO05D004592 9.7e-09 64.3 40 80.0
Actinidia18702 Actinidia chinensis HOM05D003872 ORTHO05D004592 1.3e-08 63.9 164 41.5
Nitab4.5_0000021g0440 Nicotiana tabacum HOM05D003872 ORTHO05D004592 1.7e-08 63.5 166 35.5
AUR62028169 Chenopodium quinoa HOM05D003872 ORTHO05D004592 2.8e-08 62.8 53 60.4
Thhalv10020585m.g Eutrema salsugineum HOM05D003872 ORTHO05D004592 2.8e-08 62.8 148 35.8
Solyc06g072790.3 Solanum lycopersicum HOM05D003872 ORTHO05D004592 2.8e-08 62.8 160 35.0
Sp3g14440 Schrenkiella parvula HOM05D003872 ORTHO05D004592 3.7e-08 62.4 148 36.5
THA.LOC104823803 Tarenaya hassleriana HOM05D003872 ORTHO05D004592 8.2e-08 61.2 149 33.6
Carub.0003s1582 Capsella rubella HOM05D003872 ORTHO05D004592 1.4e-07 60.5 152 35.5
arahy.Tifrunner.gnm1.ann1.D4CCQ1 Arachis hypogaea HOM05D003872 ORTHO05D004592 2.4e-07 59.7 129 36.4
EL10Ac3g05086 Beta vulgaris HOM05D003872 ORTHO05D004592 3.1e-07 59.3 122 41.0
Ca_04923_v3 Cicer arietinum L. HOM05D003872 ORTHO05D002695 3.1e-07 59.3 90 42.2
Oeu017103.1 Olea europaea HOM05D003872 ORTHO05D004592 3.1e-07 59.3 170 31.8
MBI04_g36030_MAGBIO Magnolia biondii HOM05D003872 ORTHO05D004592 4.1e-07 58.9 53 52.8
CARHR091250 Cardamine hirsuta HOM05D003872 ORTHO05D004592 9.1e-07 57.8 142 34.5
Medtr4g077800 Medicago truncatula HOM05D003872 ORTHO05D004592 1.2e-06 57.4 168 32.1
AL3G28740 Arabidopsis lyrata HOM05D003872 ORTHO05D004592 1.6e-06 57.0 149 34.2
HanXRQChr07g0191391 Helianthus annuus HOM05D003872 ORTHO05D004592 1.6e-06 57.0 40 65.0
AT3G16090 Arabidopsis thaliana HOM05D003872 ORTHO05D004592 3.5e-06 55.8 150 32.7
A02p12990 Brassica napus HOM05D003872 ORTHO05D004592 7.7e-06 54.7 41 65.9
BraA02t06355Z Brassica rapa HOM05D003872 ORTHO05D004592 7.7e-06 54.7 41 65.9
MD07G1307500 Malus domestica HOM05D003872 ORTHO05D004592 7.7e-06 54.7 64 51.6


User provided reference genes

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