Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0380661 Rosa chinensis HOM05D002263 ORTHO05D003537 5.0e-196 687.6 343 100.0
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 1.3e-95 354.0 336 61.0
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.3e-95 354.0 336 61.0
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.3e-95 354.0 336 61.0
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.3e-95 354.0 336 61.0
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.3e-95 354.0 336 61.0
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 2.2e-95 353.2 336 59.8
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 3.8e-95 352.4 336 59.2
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 3.8e-95 352.4 336 60.7
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 1.1e-94 350.9 336 59.2
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 2.1e-93 346.7 336 59.8
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 2.6e-91 339.7 336 58.0
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 7.4e-91 338.2 336 57.4
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.7e-90 337.0 336 57.4
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 8.2e-90 334.7 334 57.8
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 8.2e-90 334.7 334 57.8
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.8e-89 333.6 334 58.1
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 1.8e-89 333.6 336 57.1
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 9.1e-89 331.3 336 57.7
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 2.6e-88 329.7 336 57.1
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 3.5e-88 329.3 334 57.8
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 4.5e-88 328.9 334 56.6
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 4.5e-88 328.9 336 55.7
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 4.5e-88 328.9 334 56.3
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 5.9e-88 328.6 334 57.5
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 5.9e-88 328.6 336 56.8
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 5.9e-88 328.6 336 56.0
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.3e-87 327.4 336 55.7
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.7e-87 327.0 334 56.0
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 2.2e-87 326.6 334 55.7
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.2e-87 326.6 334 57.2
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.2e-87 326.6 334 57.2
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 2.2e-87 326.6 336 54.8
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 2.2e-87 326.6 334 57.2
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 5.0e-87 325.5 336 56.0
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 5.0e-87 325.5 334 56.9
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 6.5e-87 325.1 334 57.2
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 8.5e-87 324.7 336 56.5
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 1.4e-86 323.9 336 55.4
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 3.2e-86 322.8 334 56.0
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 3.2e-86 322.8 334 55.1
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 4.2e-86 322.4 334 55.4
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 4.2e-86 322.4 334 55.7
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 5.5e-86 322.0 336 54.5
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 5.5e-86 322.0 336 54.5
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 7.2e-86 321.6 336 56.0
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 7.2e-86 321.6 334 55.4
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 7.2e-86 321.6 336 55.4
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 7.2e-86 321.6 334 54.8
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 9.4e-86 321.2 336 54.2
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 9.4e-86 321.2 336 54.2
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 1.2e-85 320.9 336 53.9
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 1.2e-85 320.9 336 53.9
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 1.6e-85 320.5 334 55.1
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 2.1e-85 320.1 336 55.1
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 2.1e-85 320.1 336 55.1
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 2.1e-85 320.1 334 55.1
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 2.1e-85 320.1 326 55.2
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 2.7e-85 319.7 336 55.1
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 2.7e-85 319.7 334 55.4
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 2.7e-85 319.7 334 55.1
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 6.1e-85 318.5 334 56.0
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 1.0e-84 317.8 336 54.8
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 1.0e-84 317.8 336 54.8
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.8e-84 317.0 334 53.3
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 1.8e-84 317.0 334 55.1
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 1.8e-84 317.0 334 55.1
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 1.8e-84 317.0 334 54.2
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 2.3e-84 316.6 336 54.5
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 5.2e-84 315.5 334 53.9
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 6.7e-84 315.1 334 53.3
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 6.7e-84 315.1 334 53.3
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 6.7e-84 315.1 334 53.9
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 1.1e-83 314.3 334 54.2
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 1.5e-83 313.9 334 53.9
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 2.0e-83 313.5 334 54.2
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 2.6e-83 313.2 334 53.6
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 4.4e-83 312.4 336 55.1
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 4.4e-83 312.4 334 54.2
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 2.8e-82 309.7 334 53.0
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 3.7e-82 309.3 334 53.6
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 6.3e-82 308.5 334 53.6
FAN25G0983 Fragaria x ananassa HOM05D002263 ORTHO05D003537 8.2e-82 308.1 318 55.3
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.1e-81 307.8 336 53.3
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.4e-81 306.6 334 54.5
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 2.4e-81 306.6 336 53.3
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 3.1e-81 306.2 334 53.6
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 3.1e-81 306.2 336 52.7
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 3.1e-81 306.2 336 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 4.1e-81 305.8 334 53.3
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 4.1e-81 305.8 336 53.3
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 7.0e-81 305.1 334 55.4
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 7.0e-81 305.1 334 52.1
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 7.0e-81 305.1 334 52.1
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 9.1e-81 304.7 336 53.0
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 9.1e-81 304.7 334 53.0
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 2.6e-80 303.1 336 52.4
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 2.6e-80 303.1 335 52.8
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 5.9e-80 302.0 336 51.8
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.0e-79 301.2 334 52.1
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 2.2e-79 300.1 335 52.5
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 2.2e-79 300.1 335 52.5
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 5.0e-79 298.9 336 52.1
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 5.0e-79 298.9 336 53.0
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 6.5e-79 298.5 336 51.2
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 8.5e-79 298.1 336 52.1
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 8.5e-79 298.1 336 52.1
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.5e-78 297.4 334 52.7
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 1.5e-78 297.4 336 52.1
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 1.5e-78 297.4 336 51.5
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 1.9e-78 297.0 336 52.7
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 2.5e-78 296.6 335 51.6
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 1.6e-77 293.9 337 51.9
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 4.7e-77 292.4 335 50.7
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 1.0e-76 291.2 336 51.8
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 3.0e-76 289.7 336 51.5
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 1.2e-75 287.7 334 49.7
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 2.0e-75 287.0 335 49.3
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 3.4e-75 286.2 336 51.2
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 3.4e-75 286.2 331 53.2
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 1.8e-73 280.4 331 51.4
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 2.4e-73 280.0 339 49.6
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 7.0e-73 278.5 339 49.3
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 9.1e-73 278.1 339 49.0
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 1.2e-72 277.7 326 51.5
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 3.5e-72 276.2 324 51.5
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.2e-71 273.5 339 48.1
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.9e-71 273.1 339 47.8
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 6.5e-71 271.9 339 47.5
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.9e-70 270.4 339 47.8
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 2.5e-70 270.0 335 46.0
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 5.5e-70 268.9 284 56.3
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 9.4e-70 268.1 340 48.5
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 2.7e-69 266.5 337 49.0
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 3.1e-65 253.1 330 46.7
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 9.5e-62 241.5 334 47.0
FvH4_3g01730 Fragaria vesca HOM05D002263 ORTHO05D003537 2.1e-61 240.4 151 80.8
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.1e-61 240.4 331 46.8
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 2.8e-61 240.0 334 44.6
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 1.7e-55 220.7 339 45.1
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 6.6e-55 218.8 329 41.9
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 1.5e-54 217.6 318 44.7
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 7.3e-54 215.3 335 40.0
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 9.5e-54 214.9 323 40.6
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 3.6e-53 213.0 342 39.2
Medtr0756s0010 Medicago truncatula HOM05D002263 ORTHO05D003537 5.2e-52 209.1 339 43.1
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 1.3e-50 204.5 204 56.9
BcaB01g05530 Brassica carinata HOM05D002263 ORTHO05D003537 2.4e-49 200.3 337 40.1
Hma1.2p1_0326F.1_g126210 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 2.4e-49 200.3 201 55.7
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 2.7e-48 196.8 271 46.9
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 4.6e-48 196.1 201 54.2
C03p05180 Brassica napus HOM05D002263 ORTHO05D003537 1.3e-47 194.5 319 41.1
BolC3t13035H Brassica oleracea HOM05D002263 ORTHO05D003537 1.3e-47 194.5 319 41.1
CiPaw.14G099000 Carya illinoinensis HOM05D002263 ORTHO05D003537 4.3e-46 189.5 267 46.1
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 5.8e-43 179.1 343 36.4
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 1.3e-39 167.9 325 38.2
Actinidia09172 Actinidia chinensis HOM05D002263 ORTHO05D003537 3.3e-38 163.3 212 49.1
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 2.3e-36 157.1 181 47.0
TAR369G0234 Trochodendron aralioides HOM05D002005 ORTHO05D003757 2.4e-33 147.1 314 35.4
Actinidia31076 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.7e-31 141.0 214 43.9
Lsat_1_v5_gn_5_88760 Lactuca sativa HOM05D002263 ORTHO05D027778 8.6e-31 138.7 173 45.1
BcaC05g29614 Brassica carinata HOM05D002263 ORTHO05D027778 2.9e-26 123.6 204 38.2
C05p59090 Brassica napus HOM05D002263 ORTHO05D027778 2.9e-26 123.6 204 38.2
SHI26139 Sapria himalayana HOM05D002263 ORTHO05D003537 1.3e-23 114.8 152 44.7
SGA_v2.0_scaffold70G23531 Striga asiatica HOM05D002263 ORTHO05D029194 2.8e-21 107.1 102 57.8
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 6.2e-21 105.9 95 60.0
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 1.3e-18 98.2 249 31.3
BcaB01g05526 Brassica carinata HOM05D002263 ORTHO05D003537 4.9e-18 96.3 226 31.9
Rhsim09G0080900 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.2e-16 91.7 168 35.1
C03p05140 Brassica napus HOM05D002263 ORTHO05D003537 7.9e-16 89.0 120 44.2
C03p05160 Brassica napus HOM05D002263 ORTHO05D003537 3.0e-15 87.0 116 44.8
Lj4A282G40 Lonicera japonica HOM05D002263 ORTHO05D003537 4.3e-14 83.2 221 31.7
Lsat_1_v5_gn_6_66560 Lactuca sativa HOM05D002263 ORTHO05D003537 1.1e-12 78.6 152 38.2
Rhsim07G0089300 Rhododendron simsii HOM05D002263 ORTHO05D029194 1.6e-08 64.7 65 52.3
Thhalv10002141m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 6.0e-08 62.8 81 49.4
C08p33680 Brassica napus HOM05D002263 ORTHO05D101288 2.3e-07 60.8 67 47.8
Lj4A282T39 Lonicera japonica HOM05D002263 ORTHO05D003537 2.5e-06 57.4 89 44.9
SHI19943 Sapria himalayana HOM05D002263 ORTHO05D003537 4.3e-06 56.6 173 27.2


User provided reference genes

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