Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 2583.1 1321 100.0
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 2441.8 1323 93.0
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2434.8 1323 92.6
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2432.9 1323 92.7
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2429.4 1323 92.5
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2428.7 1323 92.4
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2278.4 1241 92.1
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 2194.9 1321 83.9
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2140.9 1327 82.1
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2102.4 1324 80.6
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1907.9 1326 72.1
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1895.9 1326 71.9
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1892.5 1322 72.5
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1862.4 1326 71.4
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1835.5 1329 71.6
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1830.8 1328 69.6
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1825.8 1331 71.3
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1820.4 1330 71.0
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1819.7 1329 70.4
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1816.2 1326 69.5
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1815.0 1326 69.6
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1813.1 1330 70.5
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1800.4 1333 68.6
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1785.8 1333 67.7
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1783.8 1334 68.1
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1774.2 1327 69.0
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1764.6 1247 72.7
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1754.6 1323 67.4
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1754.6 1328 66.5
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1749.9 1245 72.4
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1740.7 1326 66.4
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1739.2 1325 66.0
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1720.7 1328 66.9
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1716.8 1323 65.8
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1715.7 1327 66.0
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1714.5 1320 66.4
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1711.4 1327 65.6
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1696.4 1269 69.0
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1696.0 1328 65.2
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1692.2 1322 65.2
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1691.8 1325 65.7
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1681.4 1328 65.7
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1676.4 1322 64.3
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1661.4 1277 65.2
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1658.3 1338 62.2
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1654.8 1322 65.7
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1653.3 1323 63.7
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1652.1 1325 63.7
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1648.6 1336 62.4
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1644.4 1326 63.3
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1644.4 1342 63.6
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1641.7 1325 63.2
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1637.5 1328 62.7
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1633.6 1349 62.4
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1630.9 1323 63.3
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1630.5 1330 62.0
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1625.9 1323 63.5
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1619.0 1331 61.8
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1617.4 1332 61.6
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1612.8 1325 62.5
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1605.9 1096 74.4
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1605.9 1331 61.8
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1605.5 1265 63.2
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1604.7 1343 60.8
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1601.3 1240 64.9
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1599.7 1343 61.2
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1577.4 1328 61.0
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1572.0 1329 61.0
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1571.2 1330 60.7
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1570.8 1329 60.8
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1570.4 1328 60.5
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1570.4 1330 60.6
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1564.3 1328 60.5
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1564.3 1331 60.5
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1563.9 1100 71.0
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1557.7 1331 61.1
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1555.8 1328 60.5
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1535.0 1361 58.1
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1523.5 1192 63.8
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1523.5 1324 59.3
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1518.1 1284 63.9
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1501.9 1328 59.5
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1493.0 1130 66.1
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1489.2 1328 59.0
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1481.8 1325 58.0
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1480.7 1321 59.1
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1478.8 1109 66.4
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1448.0 1091 67.0
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1417.9 1343 54.3
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1394.8 1558 49.9
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1394.4 1158 61.3
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1372.1 1326 53.1
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1358.2 1348 54.2
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1356.3 1323 57.1
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1346.3 1330 54.7
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1333.9 943 70.4
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1216.4 903 67.4
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1166.0 1328 49.9
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1157.9 864 68.4
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1103.6 1267 48.0
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 5.4e-307 1058.1 756 71.3
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 1.1e-248 864.4 1364 37.4
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 2.6e-232 810.1 856 49.4
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 1.2e-229 801.2 1153 38.9
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 2.3e-228 797.0 1188 39.3
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 2.0e-224 783.9 1299 37.3
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 1.8e-209 734.2 808 50.1
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 1.8e-156 558.1 1624 29.1
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 2.9e-135 487.6 462 58.9
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 1.4e-134 485.3 358 69.3
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 4.2e-134 483.8 377 62.6
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 4.1e-97 360.9 1363 27.6
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 3.7e-90 337.8 1566 27.1
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 8.1e-85 320.1 302 55.0
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 1.2e-80 306.2 344 52.3
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 1.0e-79 303.1 255 55.7
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 3.3e-62 245.0 233 53.6
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 7.3e-62 243.8 196 65.8
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 1.6e-61 242.7 1189 24.6
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 2.6e-59 235.3 256 49.6
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.9e-50 204.5 167 65.3
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 6.0e-48 197.6 1394 24.6
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 3.2e-41 175.3 130 68.5
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 3.3e-38 165.2 121 68.6
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 2.7e-32 145.6 289 39.4
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 2.2e-26 125.9 117 59.0


User provided reference genes

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