Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0363271 Rosa chinensis HOM05D002001 ORTHO05D004100 1.4e-34 149.1 74 100.0
MD08G1237400 Malus domestica HOM05D002001 ORTHO05D004100 7.4e-12 73.6 67 64.2
FvH4_4g07000 Fragaria vesca HOM05D002001 ORTHO05D004100 1.6e-11 72.4 67 62.7
FAN04G1414 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.6e-11 72.4 67 62.7
FAN12G2583 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.6e-11 72.4 67 62.7
FAN22G0816 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.6e-11 72.4 67 62.7
MD15G1429300 Malus domestica HOM05D002001 ORTHO05D004100 1.6e-11 72.4 67 62.7
RcHm_v2.0_Chr4g0399131 Rosa chinensis HOM05D002001 ORTHO05D004100 1.6e-11 72.4 67 62.7
CANSAT11G0528 Cannabis sativa HOM05D002001 ORTHO05D004100 3.7e-11 71.2 67 62.7
Dinv01850 Davidia involucrata HOM05D002001 ORTHO05D004100 6.2e-11 70.5 65 61.5
FAN13G2793 Fragaria x ananassa HOM05D002001 ORTHO05D004100 6.2e-11 70.5 67 62.7
Lalb_Chr20g0123631 Lupinus albus HOM05D002001 ORTHO05D004100 6.2e-11 70.5 68 58.8
Prupe.1G574900 Prunus persica HOM05D002001 ORTHO05D004100 6.2e-11 70.5 67 61.2
RcHm_v2.0_Chr7g0220981 Rosa chinensis HOM05D002001 ORTHO05D004100 6.2e-11 70.5 67 62.7
FAN07G2305 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.1e-10 69.7 67 61.2
FAN17G1518 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.1e-10 69.7 67 61.2
Phvul.006G217100 Phaseolus vulgaris HOM05D002001 ORTHO05D004100 1.1e-10 69.7 68 57.4
QL02p098463 Quercus lobata HOM05D002001 ORTHO05D004100 1.1e-10 69.7 67 59.7
QL02p099792 Quercus lobata HOM05D002001 ORTHO05D004100 1.1e-10 69.7 67 59.7
Manes.10G123600 Manihot esculenta HOM05D002001 ORTHO05D004100 1.4e-10 69.3 67 59.7
Ca_00055_v3 Cicer arietinum L. HOM05D002001 ORTHO05D004100 1.8e-10 68.9 68 54.4
Thecc.02G090300 Theobroma cacao HOM05D002001 ORTHO05D004100 1.8e-10 68.9 67 61.2
Gohir.D13G034600 Gossypium hirsutum HOM05D002001 ORTHO05D004100 2.4e-10 68.6 67 59.7
Gorai.013G039200 Gossypium raimondii HOM05D002001 ORTHO05D004100 2.4e-10 68.6 67 59.7
Sabra17G0068000 Salix brachista HOM05D002001 ORTHO05D004100 2.4e-10 68.6 67 59.7
VMungo0540G2019 Vigna mungo HOM05D002001 ORTHO05D004100 2.4e-10 68.6 68 54.4
Ciclev10000468m.g Citrus clementina HOM05D002001 ORTHO05D004100 3.1e-10 68.2 70 57.1
Duzib132G0735 Durio zibethinus HOM05D002001 ORTHO05D004100 3.1e-10 68.2 70 57.1
Sabra17G0068100 Salix brachista HOM05D002001 ORTHO05D004100 3.1e-10 68.2 67 58.2
COL.COLO4_11757 Corchorus olitorius HOM05D002001 ORTHO05D004100 4.0e-10 67.8 67 61.2
Gohir.A13G036300 Gossypium hirsutum HOM05D002001 ORTHO05D004100 4.0e-10 67.8 67 59.7
Lj6g0014440 Lotus japonicus HOM05D002001 ORTHO05D004100 4.0e-10 67.8 65 56.9
Potri.017G076132 Populus trichocarpa HOM05D002001 ORTHO05D004100 4.0e-10 67.8 67 58.2
THA.LOC104819173 Tarenaya hassleriana HOM05D002001 ORTHO05D004100 4.0e-10 67.8 67 58.2
Atru.chr10.1555 Acer truncatum HOM05D002001 ORTHO05D004100 5.3e-10 67.4 68 58.8
Lj5C255T12 Lonicera japonica HOM05D002001 ORTHO05D004100 5.3e-10 67.4 65 60.0
Prupe.1G574800 Prunus persica HOM05D002001 ORTHO05D004100 5.3e-10 67.4 67 59.7
Atru.chr10.1556 Acer truncatum HOM05D002001 ORTHO05D004100 6.9e-10 67.0 68 57.4
AL2G15430 Arabidopsis lyrata HOM05D002001 ORTHO05D004100 6.9e-10 67.0 67 59.7
AT1G61010 Arabidopsis thaliana HOM05D002001 ORTHO05D004100 6.9e-10 67.0 67 59.7
arahy.Tifrunner.gnm1.ann1.97GRLX Arachis hypogaea HOM05D002001 ORTHO05D004100 6.9e-10 67.0 64 57.8
arahy.Tifrunner.gnm1.ann1.GST58F Arachis hypogaea HOM05D002001 ORTHO05D004100 6.9e-10 67.0 64 57.8
Carub.0002s0418 Capsella rubella HOM05D002001 ORTHO05D004100 6.9e-10 67.0 67 59.7
FvH4_5g28761 Fragaria vesca HOM05D002001 ORTHO05D004100 6.9e-10 67.0 65 61.5
Medtr2g006180 Medicago truncatula HOM05D002001 ORTHO05D004100 6.9e-10 67.0 68 52.9
Prupe.I006200 Prunus persica HOM05D002001 ORTHO05D004100 6.9e-10 67.0 67 59.7
TPR.G35593 Trifolium pratense HOM05D002001 ORTHO05D004100 6.9e-10 67.0 68 52.9
BcaB04g20308 Brassica carinata HOM05D002001 ORTHO05D004100 9.0e-10 66.6 67 59.7
Glyma.12G168900 Glycine max HOM05D002001 ORTHO05D004100 9.0e-10 66.6 68 52.9
Hma1.2p1_2522F.1_g323860 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 9.0e-10 66.6 65 60.0
BcaC09g49340 Brassica carinata HOM05D002001 ORTHO05D004100 1.2e-09 66.2 67 59.7
A01p29840 Brassica napus HOM05D002001 ORTHO05D004100 1.2e-09 66.2 67 59.7
C01p37690 Brassica napus HOM05D002001 ORTHO05D004100 1.2e-09 66.2 67 59.7
BolC1t03733H Brassica oleracea HOM05D002001 ORTHO05D004100 1.2e-09 66.2 67 59.7
BraA01t03112Z Brassica rapa HOM05D002001 ORTHO05D004100 1.2e-09 66.2 67 59.7
Rhsim10G0102700 Rhododendron simsii HOM05D002001 ORTHO05D004100 1.2e-09 66.2 66 57.6
vmacro19877 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 1.2e-09 66.2 65 58.5
GSVIVG01023380001 Vitis vinifera HOM05D002001 ORTHO05D004100 1.2e-09 66.2 66 59.1
Ciclev10000467m.g Citrus clementina HOM05D002001 ORTHO05D004100 1.5e-09 65.9 67 58.2
Duzib052G0396 Durio zibethinus HOM05D002001 ORTHO05D004100 1.5e-09 65.9 67 58.2
Sed0012035 Sechium edule HOM05D002001 ORTHO05D004100 2.0e-09 65.5 67 58.2
Actinidia26158 Actinidia chinensis HOM05D002001 ORTHO05D004100 2.6e-09 65.1 65 55.4
CiPaw.06G144400 Carya illinoinensis HOM05D002001 ORTHO05D004100 2.6e-09 65.1 64 57.8
Haze_01808 Corylus avellana HOM05D002001 ORTHO05D004100 2.6e-09 65.1 67 56.7
Lj5A255T82 Lonicera japonica HOM05D002001 ORTHO05D004100 2.6e-09 65.1 65 56.9
Psat3g090080 Pisum sativum HOM05D002001 ORTHO05D004100 2.6e-09 65.1 65 53.8
Potri.017G076000 Populus trichocarpa HOM05D002001 ORTHO05D004100 2.6e-09 65.1 67 55.2
Rhsim10G0102800 Rhododendron simsii HOM05D002001 ORTHO05D004100 2.6e-09 65.1 65 56.9
TWI14G0623 Tripterygium wilfordii HOM05D002001 ORTHO05D004100 2.6e-09 65.1 67 56.7
Migut.B00809 Erythranthe guttata HOM05D002001 ORTHO05D004100 3.4e-09 64.7 65 55.4
Thhalv10024010m.g Eutrema salsugineum HOM05D002001 ORTHO05D004100 3.4e-09 64.7 67 58.2
vmacro19878 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 3.4e-09 64.7 65 56.9
Haze_01809 Corylus avellana HOM05D002001 ORTHO05D004100 4.5e-09 64.3 67 55.2
Hma1.2p1_2522F.1_g323890 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 4.5e-09 64.3 65 56.9
Potri.017G076300 Populus trichocarpa HOM05D002001 ORTHO05D004100 5.8e-09 63.9 67 56.7
PGR042G3798 Punica granatum HOM05D002001 ORTHO05D004100 5.8e-09 63.9 65 56.9
Actinidia06465 Actinidia chinensis HOM05D002001 ORTHO05D004100 7.6e-09 63.5 65 55.4
Glyma.08G188800 Glycine max HOM05D002001 ORTHO05D004100 7.6e-09 63.5 68 52.9
Sp2g03500 Schrenkiella parvula HOM05D002001 ORTHO05D004100 7.6e-09 63.5 67 56.7
Aa31LG2G9570 Aethionema arabicum HOM05D002001 ORTHO05D004100 1.0e-08 63.2 67 58.2
Cpa.g.sc118.41 Carica papaya HOM05D002001 ORTHO05D004100 1.0e-08 63.2 67 55.2
ClCG11G013430 Citrullus lanatus HOM05D002001 ORTHO05D004100 1.0e-08 63.2 67 55.2
MELO3C027241.2 Cucumis melo HOM05D002001 ORTHO05D004100 1.0e-08 63.2 67 55.2
CsaV3_5G029960 Cucumis sativus L. HOM05D002001 ORTHO05D004100 1.0e-08 63.2 67 55.2
DCAR_006689 Daucus carota HOM05D002001 ORTHO05D004100 1.3e-08 62.8 67 53.7
Oeu064618.2 Olea europaea HOM05D002001 ORTHO05D004100 1.7e-08 62.4 67 53.7
CsaV3_5G029980 Cucumis sativus L. HOM05D002001 ORTHO05D004100 2.2e-08 62.0 67 53.7
Oeu034119.1 Olea europaea HOM05D002001 ORTHO05D004100 2.2e-08 62.0 67 53.7
AUR62011671 Chenopodium quinoa HOM05D002001 ORTHO05D004100 3.8e-08 61.2 65 55.4
AUR62016494 Chenopodium quinoa HOM05D002001 ORTHO05D004100 3.8e-08 61.2 65 55.4
Eucgr.G00401 Eucalyptus grandis HOM05D002001 ORTHO05D004100 3.8e-08 61.2 65 55.4
Eucgr.G00404 Eucalyptus grandis HOM05D002001 ORTHO05D004100 3.8e-08 61.2 67 53.7
SHI08868 Sapria himalayana HOM05D002001 ORTHO05D004100 4.9e-08 60.8 67 50.7
CARHR052150 Cardamine hirsuta HOM05D002001 ORTHO05D004100 6.5e-08 60.5 67 55.2
Eucgr.G00400 Eucalyptus grandis HOM05D002001 ORTHO05D004100 6.5e-08 60.5 67 53.7
Sc14g0007300 Simmondsia chinensis HOM05D002001 ORTHO05D004100 6.5e-08 60.5 67 53.7
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 8.4e-08 60.1 68 54.4
Ah.02g126190 Amaranthus hybridus HOM05D002001 ORTHO05D004100 8.4e-08 60.1 64 56.2
TAR629G1401 Trochodendron aralioides HOM05D002001 ORTHO05D004100 8.4e-08 60.1 67 53.7
Hund06801 Selenicereus undatus HOM05D002001 ORTHO05D004100 1.1e-07 59.7 65 53.8
MSTRG.20312 Avicennia marina HOM05D002001 ORTHO05D004100 1.4e-07 59.3 67 49.3
BcaC02g10597 Brassica carinata HOM05D002001 ORTHO05D004100 1.4e-07 59.3 67 53.7
Peaxi162Scf00003g03948 Petunia axillaris HOM05D002001 ORTHO05D004100 1.4e-07 59.3 65 52.3
SGA_v2.0_scaffold92G28301 Striga asiatica HOM05D002001 ORTHO05D004100 1.9e-07 58.9 65 50.8
Zm00001eb210600 Zea mays HOM05D002001 ORTHO05D004100 1.9e-07 58.9 67 50.7
Aqoxy7G01151 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 2.5e-07 58.5 67 46.3
Aqoxy7G01153 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 2.5e-07 58.5 67 46.3
CSS0036640 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D004100 3.2e-07 58.2 50 60.0
TAR629G1852 Trochodendron aralioides HOM05D002001 ORTHO05D004100 3.2e-07 58.2 66 53.0
MBI04_g30788_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 4.2e-07 57.8 67 49.3
MBI04_g30789_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 4.2e-07 57.8 67 49.3
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 5.5e-07 57.4 67 53.7
Nitab4.5_0005079g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 5.5e-07 57.4 65 50.8
Nitab4.5_0007277g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 5.5e-07 57.4 65 50.8
Nitab4.5_0028330g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 5.5e-07 57.4 65 50.8
EL10Ac9g22038 Beta vulgaris HOM05D002001 ORTHO05D004100 7.1e-07 57.0 65 50.8
Zm00001eb064770 Zea mays HOM05D002001 ORTHO05D004100 7.1e-07 57.0 67 49.3
CDE01G0324 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 9.3e-07 56.6 67 44.8
Nitab4.5_0000667g0210 Nicotiana tabacum HOM05D002001 ORTHO05D004100 1.2e-06 56.2 65 49.2
Os03g0852900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D004100 1.6e-06 55.8 68 48.5
HanXRQChr17g0559661 Helianthus annuus HOM05D002001 ORTHO05D004100 2.7e-06 55.1 65 50.8
FAN06G3162 Fragaria x ananassa HOM05D002001 ORTHO05D004100 3.5e-06 54.7 67 50.7
CAN.G290.19 Capsicum annuum HOM05D002001 ORTHO05D004100 4.6e-06 54.3 67 46.3
Ah.01g004900 Amaranthus hybridus HOM05D002001 ORTHO05D004100 6.0e-06 53.9 65 50.8
CAN.G529.48 Capsicum annuum HOM05D002001 ORTHO05D004100 6.0e-06 53.9 65 49.2
ATR0568G050 Amborella trichopoda HOM05D002001 ORTHO05D004100 7.9e-06 53.5 68 44.1
Lsat_1_v5_gn_7_79181 Lactuca sativa HOM05D002001 ORTHO05D004100 7.9e-06 53.5 65 47.7
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 7.9e-06 53.5 68 42.6


User provided reference genes

Program Settings