Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0362541 Rosa chinensis HOM05D003241 ORTHO05D003812 3.4e-46 188.0 93 100.0
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 4.0e-23 111.3 55 98.2
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 4.0e-23 111.3 55 98.2
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.2e-23 110.9 59 91.5
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 2.0e-22 109.0 55 94.5
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.0e-22 109.0 55 94.5
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.0e-22 109.0 55 94.5
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.0e-22 109.0 55 94.5
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.0e-22 109.0 55 94.5
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.9e-21 104.4 54 92.6
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 7.1e-20 100.5 55 85.5
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 9.2e-20 100.1 53 88.7
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 9.2e-20 100.1 53 88.7
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 9.2e-20 100.1 53 88.7
QL09p049206 Quercus lobata HOM05D003241 ORTHO05D003812 1.2e-19 99.8 53 90.6
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 1.6e-19 99.4 53 88.7
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 2.7e-19 98.6 55 81.8
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 3.5e-19 98.2 55 81.8
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 3.5e-19 98.2 55 83.6
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 3.5e-19 98.2 55 83.6
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 4.6e-19 97.8 55 81.8
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 4.6e-19 97.8 55 81.8
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 4.6e-19 97.8 55 83.6
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 4.6e-19 97.8 55 81.8
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 4.6e-19 97.8 55 81.8
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 4.6e-19 97.8 55 81.8
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 6.0e-19 97.4 55 83.6
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 6.0e-19 97.4 55 85.5
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 7.8e-19 97.1 55 81.8
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 7.8e-19 97.1 55 83.6
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 7.8e-19 97.1 55 83.6
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.0e-18 96.7 55 80.0
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 1.0e-18 96.7 53 83.0
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 1.0e-18 96.7 55 80.0
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 1.0e-18 96.7 55 80.0
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 1.0e-18 96.7 53 81.1
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 1.3e-18 96.3 55 78.2
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 1.7e-18 95.9 55 81.8
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 1.7e-18 95.9 55 81.8
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 1.7e-18 95.9 55 81.8
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 1.7e-18 95.9 55 80.0
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 1.7e-18 95.9 55 81.8
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 2.3e-18 95.5 55 80.0
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 3.0e-18 95.1 55 81.8
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 3.9e-18 94.7 53 84.9
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.9e-18 94.7 53 83.0
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 5.1e-18 94.4 55 78.2
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 5.1e-18 94.4 53 83.0
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 5.1e-18 94.4 53 83.0
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 8.6e-18 93.6 55 78.2
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.1e-17 93.2 53 81.1
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 1.1e-17 93.2 53 83.0
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 1.5e-17 92.8 55 76.4
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.9e-17 92.4 53 81.1
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 4.3e-17 91.3 55 80.0
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 5.6e-17 90.9 53 81.1
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 5.6e-17 90.9 53 77.4
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 7.3e-17 90.5 53 79.2
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 9.6e-17 90.1 53 81.1
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 9.6e-17 90.1 55 74.5
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 9.6e-17 90.1 53 79.2
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 1.2e-16 89.7 53 77.4
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.2e-16 89.7 53 77.4
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 1.2e-16 89.7 53 77.4
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.2e-16 89.7 53 77.4
Sopen06g019980 Solanum pennellii HOM05D003241 ORTHO05D003812 1.6e-16 89.4 54 75.9
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 2.1e-16 89.0 53 77.4
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 2.8e-16 88.6 53 75.5
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 2.8e-16 88.6 56 76.8
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 2.8e-16 88.6 53 77.4
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 2.8e-16 88.6 53 73.6
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 2.8e-16 88.6 53 77.4
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.8e-16 88.6 53 77.4
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 4.7e-16 87.8 53 77.4
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 4.7e-16 87.8 59 72.9
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 4.7e-16 87.8 53 79.2
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 6.2e-16 87.4 53 75.5
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 6.2e-16 87.4 53 75.5
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 6.2e-16 87.4 53 75.5
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 8.1e-16 87.0 54 83.3
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.1e-15 86.7 63 68.3
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 1.1e-15 86.7 53 75.5
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 1.1e-15 86.7 53 75.5
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 1.1e-15 86.7 53 75.5
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 1.1e-15 86.7 53 75.5
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 1.1e-15 86.7 56 78.6
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 1.4e-15 86.3 56 69.6
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 1.8e-15 85.9 53 75.5
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 3.1e-15 85.1 55 72.7
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 3.1e-15 85.1 54 81.5
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 3.1e-15 85.1 55 72.7
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 4.0e-15 84.7 53 71.7
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 5.2e-15 84.3 54 75.9
TPR.G37958 Trifolium pratense HOM05D003241 ORTHO05D003812 5.2e-15 84.3 55 76.4
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 6.8e-15 84.0 53 77.4
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 6.8e-15 84.0 54 75.9
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 6.8e-15 84.0 53 73.6
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 8.9e-15 83.6 53 71.7
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.2e-14 83.2 53 71.7
MBI14_g36867_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 1.5e-14 82.8 53 77.4
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 1.5e-14 82.8 54 74.1
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 2.0e-14 82.4 53 71.7
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 2.0e-14 82.4 54 74.1
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 2.6e-14 82.0 53 71.7
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 3.4e-14 81.6 53 73.6
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 4.4e-14 81.3 56 71.4
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.4e-14 81.3 53 75.5
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 9.9e-14 80.1 53 69.8
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 1.3e-13 79.7 56 73.2
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 1.3e-13 79.7 56 73.2
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 4.9e-13 77.8 55 65.5
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 4.9e-13 77.8 55 65.5
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 5.4e-12 74.3 55 63.6
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 9.3e-12 73.6 55 65.5
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 6.0e-11 70.9 55 65.5
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 1.7e-10 69.3 80 47.5
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 2.3e-10 68.9 55 61.8
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 3.9e-10 68.2 66 56.1
SHI33105 Sapria himalayana HOM05D000743 ORTHO05D000580 8.7e-10 67.0 53 60.4
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.9e-09 65.9 42 71.4
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.3e-08 63.2 38 76.3
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 3.6e-08 61.6 55 50.9
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 3.6e-08 61.6 55 56.4
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 8.1e-08 60.5 47 63.8
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 1.1e-07 60.1 31 87.1
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 1.4e-07 59.7 53 56.6
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 4.0e-07 58.2 53 60.4
Solyc11g008460.1 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.5e-06 56.2 31 83.9
SalBow6G1729 Salvia bowleyana HOM05D003241 ORTHO05D003812 2.0e-06 55.8 43 60.5
SalBow6G5488 Salvia bowleyana HOM05D003241 ORTHO05D003812 2.0e-06 55.8 43 60.5
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 9.9e-06 53.5 49 59.2


User provided reference genes

Program Settings