Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0362531 Rosa chinensis HOM05D003241 ORTHO05D025469 9.2e-40 166.4 82 100.0
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 8.4e-17 90.1 50 90.0
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 8.4e-17 90.1 50 90.0
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.1e-16 89.7 50 90.0
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.1e-16 89.7 50 90.0
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.1e-16 89.7 50 90.0
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.1e-16 89.7 50 90.0
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.4e-16 89.4 50 88.0
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.2e-16 87.8 49 89.8
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 5.5e-16 87.4 50 88.0
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 1.6e-15 85.9 50 82.0
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 3.5e-15 84.7 50 80.0
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 4.6e-15 84.3 50 82.0
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.9e-13 79.0 50 80.0
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 4.3e-13 77.8 55 70.9
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 7.4e-13 77.0 54 72.2
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 1.6e-12 75.9 54 74.1
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.6e-12 75.9 54 70.4
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.6e-12 75.9 54 70.4
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 1.6e-12 75.9 54 70.4
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.6e-12 75.9 50 74.0
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.6e-12 75.9 48 77.1
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 2.1e-12 75.5 50 72.0
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 2.1e-12 75.5 50 76.0
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 3.7e-12 74.7 50 76.0
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 4.8e-12 74.3 50 74.0
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 8.2e-12 73.6 50 70.0
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 8.2e-12 73.6 50 72.0
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 1.1e-11 73.2 50 70.0
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 1.1e-11 73.2 50 68.0
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 1.1e-11 73.2 50 70.0
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 1.1e-11 73.2 47 78.7
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 1.1e-11 73.2 51 74.5
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 1.1e-11 73.2 52 73.1
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 1.4e-11 72.8 48 68.8
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 1.4e-11 72.8 48 79.2
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.4e-11 72.8 50 70.0
Solyc11g008460.1 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.4e-11 72.8 50 74.0
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 1.4e-11 72.8 50 74.0
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 1.8e-11 72.4 50 74.0
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 2.4e-11 72.0 48 79.2
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 3.1e-11 71.6 50 68.0
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 3.1e-11 71.6 48 70.8
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 4.0e-11 71.2 50 72.0
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 6.9e-11 70.5 48 75.0
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 9.0e-11 70.1 50 70.0
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 9.0e-11 70.1 50 68.0
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 1.2e-10 69.7 50 66.0
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 2.0e-10 68.9 48 70.8
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 2.6e-10 68.6 53 62.3
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 3.4e-10 68.2 48 77.1
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.5e-10 67.8 50 66.0
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.5e-10 67.8 50 66.0
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.5e-10 67.8 50 66.0
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 7.6e-10 67.0 46 71.7
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 7.6e-10 67.0 46 71.7
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.0e-09 66.6 50 66.0
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 1.0e-09 66.6 46 78.3
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 1.0e-09 66.6 46 78.3
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.3e-09 66.2 46 78.3
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-09 66.2 50 66.0
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-09 66.2 50 66.0
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.7e-09 65.9 50 66.0
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 1.7e-09 65.9 48 75.0
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 2.2e-09 65.5 49 61.2
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 2.2e-09 65.5 46 78.3
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 2.9e-09 65.1 48 66.7
QL06p040345 Quercus lobata HOM05D003241 ORTHO05D003812 2.9e-09 65.1 50 64.0
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 3.8e-09 64.7 50 64.0
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 3.8e-09 64.7 46 71.7
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 6.5e-09 63.9 52 59.6
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 6.5e-09 63.9 50 64.0
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 6.5e-09 63.9 46 67.4
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 6.5e-09 63.9 46 67.4
QL04p053119 Quercus lobata HOM05D003241 ORTHO05D003812 6.5e-09 63.9 46 69.6
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 6.5e-09 63.9 48 68.8
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.4e-08 62.8 50 64.0
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.4e-08 62.8 50 64.0
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 1.4e-08 62.8 50 64.0
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 1.9e-08 62.4 50 64.0
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 1.9e-08 62.4 46 69.6
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 2.5e-08 62.0 50 64.0
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 2.5e-08 62.0 48 68.8
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 2.5e-08 62.0 50 66.0
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 4.2e-08 61.2 48 66.7
Haze_07845 Corylus avellana HOM05D003241 ORTHO05D003812 4.2e-08 61.2 46 65.2
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 5.5e-08 60.8 50 68.0
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 7.1e-08 60.5 48 64.6
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 7.1e-08 60.5 48 64.6
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 7.1e-08 60.5 48 64.6
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 7.1e-08 60.5 48 64.6
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.2e-07 59.7 50 64.0
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 1.6e-07 59.3 48 64.6
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 4.6e-07 57.8 48 60.4
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 6.1e-07 57.4 52 57.7
QL05p063869 Quercus lobata HOM05D003241 ORTHO05D003812 1.0e-06 56.6 41 70.7
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 1.8e-06 55.8 56 55.4
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 2.3e-06 55.5 50 54.0
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 2.3e-06 55.5 39 66.7
FAN26G1578 Fragaria x ananassa HOM05D030549 ORTHO05D025469 5.1e-06 54.3 45 57.8


User provided reference genes

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