Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 4.3e-112 407.9 195 100.0
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 5.7e-96 354.4 255 72.2
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 2.0e-88 329.3 253 68.0
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.0e-88 329.3 253 68.0
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 1.7e-79 299.7 257 62.6
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 2.3e-73 279.3 245 62.4
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 1.6e-69 266.5 258 57.4
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 2.0e-69 266.2 258 57.4
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 7.8e-69 264.2 258 57.4
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 2.9e-68 262.3 258 56.2
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 6.6e-68 261.2 257 56.4
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 7.3e-67 257.7 253 55.7
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 9.5e-67 257.3 253 56.1
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 8.0e-66 254.2 248 57.3
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 8.0e-66 254.2 248 57.3
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 8.0e-66 254.2 256 55.1
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 4.0e-65 251.9 220 62.3
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 4.0e-65 251.9 258 54.7
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 5.2e-65 251.5 257 54.9
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 6.8e-65 251.1 261 53.3
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 8.9e-65 250.8 258 54.3
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 2.6e-64 249.2 237 58.6
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 3.4e-64 248.8 257 56.0
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 4.4e-64 248.4 232 58.6
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 5.7e-64 248.1 257 54.1
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 2.9e-63 245.7 257 54.9
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 8.3e-63 244.2 250 54.4
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 8.3e-63 244.2 232 56.5
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 8.3e-63 244.2 252 53.6
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 1.1e-62 243.8 255 52.5
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 1.1e-62 243.8 249 53.8
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 1.4e-62 243.4 240 55.8
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 1.4e-62 243.4 240 55.8
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 1.4e-62 243.4 254 53.5
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 1.8e-62 243.0 251 53.8
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 2.4e-62 242.7 252 54.0
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 2.4e-62 242.7 253 53.0
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 7.0e-62 241.1 255 52.9
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 1.2e-61 240.4 259 52.1
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 1.2e-61 240.4 261 52.9
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 1.6e-61 240.0 251 53.8
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 2.0e-61 239.6 251 54.2
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 3.5e-61 238.8 253 51.8
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 4.6e-61 238.4 249 53.8
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 4.6e-61 238.4 258 53.1
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 5.9e-61 238.0 253 51.4
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 1.0e-60 237.3 255 52.9
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 1.0e-60 237.3 254 52.4
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.7e-60 236.5 261 52.5
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 1.7e-60 236.5 256 50.8
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 2.3e-60 236.1 252 50.8
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 3.9e-60 235.3 249 52.2
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 3.9e-60 235.3 261 51.7
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 3.9e-60 235.3 261 51.7
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 5.0e-60 235.0 255 52.2
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 1.1e-59 233.8 248 51.6
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.5e-59 233.4 254 52.0
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 1.5e-59 233.4 264 51.1
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 2.5e-59 232.6 253 51.4
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 3.3e-59 232.3 254 51.2
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 5.6e-59 231.5 261 51.7
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 9.5e-59 230.7 246 50.8
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 1.2e-58 230.3 259 49.8
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 6.2e-58 228.0 267 48.3
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.1e-57 227.3 224 58.5
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.0e-56 223.0 195 62.6
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 2.6e-56 222.6 225 56.9
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 2.6e-56 222.6 240 52.5
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 3.4e-56 222.2 226 53.5
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 5.8e-56 221.5 258 50.4
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 7.5e-56 221.1 253 50.2
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 7.5e-56 221.1 253 49.0
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 4.9e-55 218.4 253 49.4
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 4.9e-55 218.4 255 48.2
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 1.1e-54 217.2 253 49.0
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 1.9e-54 216.5 253 49.8
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 5.4e-54 214.9 239 50.2
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.6e-53 213.4 241 49.0
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 1.0e-52 210.7 279 43.4
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 1.9e-51 206.5 266 45.1
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 9.9e-48 194.1 259 47.5
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.3e-47 193.7 233 48.5
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 4.9e-47 191.8 208 49.0
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 2.1e-45 186.4 224 48.2
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 1.7e-44 183.3 258 45.3
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 1.9e-43 179.9 242 45.9
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 5.6e-43 178.3 248 44.4
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 4.7e-42 175.3 254 44.5
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 6.2e-42 174.9 238 48.7
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 1.2e-40 170.6 225 45.8
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 1.5e-40 170.2 141 63.1
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 2.0e-40 169.9 120 70.8
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 3.4e-40 169.1 232 46.1
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 3.4e-40 169.1 300 34.3
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 1.7e-39 166.8 191 49.2
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 2.9e-39 166.0 103 77.7
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 6.0e-37 158.3 317 32.5
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 4.7e-34 148.7 101 71.3
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 1.4e-33 147.1 193 45.6
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 4.0e-33 145.6 191 46.6
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.5e-32 143.7 102 68.6
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 4.4e-32 142.1 103 69.9
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 2.7e-29 132.9 252 32.1
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 3.5e-29 132.5 103 62.1
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 1.5e-27 127.1 221 36.7
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 8.1e-26 121.3 103 53.4
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 6.4e-23 111.7 196 37.2
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 3.2e-22 109.4 70 75.7
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 2.1e-21 106.7 195 34.4
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 1.0e-20 104.4 92 58.7
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.3e-20 104.0 71 70.4
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 1.5e-16 90.5 144 41.7
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 2.3e-12 76.6 100 41.0
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 3.3e-11 72.8 103 40.8
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.5e-08 63.9 43 69.8
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 5.8e-08 62.0 30 93.3
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 7.6e-08 61.6 28 92.9


User provided reference genes

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