Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349851 Rosa chinensis HOM05D005501 ORTHO05D007485 6.0e-161 570.9 300 100.0
RcHm_v2.0_Chr1g0349931 Rosa chinensis HOM05D005501 ORTHO05D007485 4.3e-95 352.1 299 67.2
FAN03G0203 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.2e-94 349.7 299 66.6
FvH4_7g11490 Fragaria vesca HOM05D005501 ORTHO05D007485 4.8e-94 348.6 299 66.6
FAN10G2689 Fragaria x ananassa HOM05D005501 ORTHO05D007485 4.8e-94 348.6 299 66.6
FAN10G2758 Fragaria x ananassa HOM05D005501 ORTHO05D007485 4.8e-94 348.6 299 66.6
FAN01G2666 Fragaria x ananassa HOM05D005501 ORTHO05D007485 6.3e-94 348.2 299 65.9
FAN06G3216 Fragaria x ananassa HOM05D005501 ORTHO05D007485 6.3e-94 348.2 299 66.6
FAN06G2192 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.4e-93 347.1 299 66.2
Prupe.2G143300 Prunus persica HOM05D005501 ORTHO05D007485 1.2e-89 334.0 299 63.2
GSVIVG01027664001 Vitis vinifera HOM05D005501 ORTHO05D007485 1.8e-88 330.1 299 61.5
MD02G1206900 Malus domestica HOM05D005501 ORTHO05D007485 3.9e-88 328.9 299 62.5
Peaxi162Scf00959g00124 Petunia axillaris HOM05D005501 ORTHO05D007485 1.3e-86 323.9 295 61.7
MELO3C006202.2 Cucumis melo HOM05D005501 ORTHO05D007485 3.7e-86 322.4 302 59.9
CsaV3_3G009810 Cucumis sativus L. HOM05D005501 ORTHO05D007485 3.7e-86 322.4 302 59.9
Potri.014G067800 Populus trichocarpa HOM05D005501 ORTHO05D007485 4.8e-86 322.0 299 60.2
arahy.Tifrunner.gnm1.ann1.J20DWG Arachis hypogaea HOM05D005501 ORTHO05D007485 8.2e-86 321.2 299 58.9
HanXRQChr16g0519981 Helianthus annuus HOM05D005501 ORTHO05D007485 8.2e-86 321.2 302 59.9
Lj3g0016597 Lotus japonicus HOM05D005501 ORTHO05D007485 1.1e-85 320.9 300 58.3
Actinidia12246 Actinidia chinensis HOM05D005501 ORTHO05D007485 1.4e-85 320.5 306 59.5
CSS0010588 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 1.4e-85 320.5 299 61.2
Dinv43691 Davidia involucrata HOM05D005501 ORTHO05D007485 2.4e-85 319.7 299 60.5
CSS0024830 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 3.1e-85 319.3 299 60.9
Sed0021448 Sechium edule HOM05D005501 ORTHO05D007485 3.1e-85 319.3 299 60.9
CANSAT56G2357 Cannabis sativa HOM05D005501 ORTHO05D007485 4.1e-85 318.9 299 59.2
TAR374G1545 Trochodendron aralioides HOM05D005501 ORTHO05D007485 4.1e-85 318.9 299 60.2
TWI14G0369 Tripterygium wilfordii HOM05D005501 ORTHO05D007485 5.3e-85 318.5 299 60.5
Duzib133G0079 Durio zibethinus HOM05D005501 ORTHO05D007485 1.6e-84 317.0 299 58.5
VMungo0331G1483 Vigna mungo HOM05D005501 ORTHO05D007485 2.0e-84 316.6 299 59.2
COL.COLO4_12526 Corchorus olitorius HOM05D005501 ORTHO05D007485 2.6e-84 316.2 299 58.9
TPR.G7589 Trifolium pratense HOM05D005501 ORTHO05D007485 2.6e-84 316.2 299 58.5
TAR375G0004 Trochodendron aralioides HOM05D005501 ORTHO05D007485 2.6e-84 316.2 299 59.2
Thhalv10001427m.g Eutrema salsugineum HOM05D005501 ORTHO05D007485 3.5e-84 315.8 299 58.5
Glyma.03G027900 Glycine max HOM05D005501 ORTHO05D007485 3.5e-84 315.8 299 58.9
Ca_19945_v3 Cicer arietinum L. HOM05D005501 ORTHO05D007485 4.5e-84 315.5 299 58.2
Nitab4.5_0001329g0140 Nicotiana tabacum HOM05D005501 ORTHO05D007485 4.5e-84 315.5 295 59.0
Aa31LG1G26800 Aethionema arabicum HOM05D005501 ORTHO05D007485 5.9e-84 315.1 304 58.2
MSTRG.20738 Avicennia marina HOM05D005501 ORTHO05D007485 1.0e-83 314.3 299 58.5
Phvul.010G081700 Phaseolus vulgaris HOM05D005501 ORTHO05D007485 1.0e-83 314.3 299 58.2
Sabra14G0047700 Salix brachista HOM05D005501 ORTHO05D007485 1.0e-83 314.3 299 58.9
QL08p052809 Quercus lobata HOM05D005501 ORTHO05D007485 1.3e-83 313.9 299 58.9
Manes.01G266900 Manihot esculenta HOM05D005501 ORTHO05D007485 1.7e-83 313.5 299 58.9
Gohir.D08G156600 Gossypium hirsutum HOM05D005501 ORTHO05D007485 2.2e-83 313.2 299 57.9
Gorai.004G162900 Gossypium raimondii HOM05D005501 ORTHO05D007485 2.2e-83 313.2 299 57.9
Lalb_Chr07g0189951 Lupinus albus HOM05D005501 ORTHO05D007485 2.2e-83 313.2 299 58.5
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 2.9e-83 312.8 299 58.9
Lj7C531T10 Lonicera japonica HOM05D005501 ORTHO05D007485 8.5e-83 311.2 299 58.5
CARHR140480 Cardamine hirsuta HOM05D005501 ORTHO05D007485 1.1e-82 310.8 299 57.5
Oeu055503.2 Olea europaea HOM05D005501 ORTHO05D007485 1.1e-82 310.8 315 56.5
CAN.G295.11 Capsicum annuum HOM05D005501 ORTHO05D007485 1.5e-82 310.5 299 57.9
Gohir.A08G135800 Gossypium hirsutum HOM05D005501 ORTHO05D007485 1.5e-82 310.5 299 57.5
AL4G44370 Arabidopsis lyrata HOM05D005501 ORTHO05D007485 2.5e-82 309.7 299 57.9
Nitab4.5_0003912g0080 Nicotiana tabacum HOM05D005501 ORTHO05D007485 2.5e-82 309.7 299 57.5
Medtr4g024920 Medicago truncatula HOM05D005501 ORTHO05D007485 4.2e-82 308.9 299 57.9
AT2G45270 Arabidopsis thaliana HOM05D005501 ORTHO05D007485 5.5e-82 308.5 299 57.5
Cpa.g.sc18.102 Carica papaya HOM05D005501 ORTHO05D007485 5.5e-82 308.5 299 57.2
Nn1g01133 Nelumbo nucifera HOM05D005501 ORTHO05D007485 5.5e-82 308.5 299 57.9
Thecc.01G378900 Theobroma cacao HOM05D005501 ORTHO05D007485 5.5e-82 308.5 298 57.4
MBI04_g44162_MAGBIO Magnolia biondii HOM05D005501 ORTHO05D007485 9.4e-82 307.8 299 58.2
Sp4g27290 Schrenkiella parvula HOM05D005501 ORTHO05D007485 9.4e-82 307.8 299 56.5
SpUn0031_0030 Schrenkiella parvula HOM05D005501 ORTHO05D007485 9.4e-82 307.8 299 56.5
vmacro13416 Vaccinium macrocarpon HOM05D005501 ORTHO05D007485 1.2e-81 307.4 326 55.2
Aqoxy7G00665 Aquilegia oxysepala HOM05D005501 ORTHO05D007485 2.7e-81 306.2 299 57.9
Cc02_g24090 Coffea canephora HOM05D005501 ORTHO05D007485 2.7e-81 306.2 299 56.9
DCAR_002088 Daucus carota HOM05D005501 ORTHO05D007485 2.7e-81 306.2 299 58.5
BcaC02g12231 Brassica carinata HOM05D005501 ORTHO05D007485 3.6e-81 305.8 299 56.2
Lsat_1_v5_gn_4_43120 Lactuca sativa HOM05D005501 ORTHO05D007485 8.0e-81 304.7 299 58.2
Sopen05g029410 Solanum pennellii HOM05D005501 ORTHO05D007485 8.0e-81 304.7 299 56.9
AUR62004192 Chenopodium quinoa HOM05D005501 ORTHO05D007485 1.0e-80 304.3 299 57.2
Sc02g0002650 Simmondsia chinensis HOM05D005501 ORTHO05D007485 1.0e-80 304.3 299 56.5
PGSC0003DMG401007021 Solanum tuberosum HOM05D005501 ORTHO05D007485 1.4e-80 303.9 299 56.5
BcaB02g08946 Brassica carinata HOM05D005501 ORTHO05D007485 3.0e-80 302.8 299 55.5
Carub.0004s2787 Capsella rubella HOM05D005501 ORTHO05D007485 3.0e-80 302.8 299 56.9
Solyc05g050940.4 Solanum lycopersicum HOM05D005501 ORTHO05D007485 3.0e-80 302.8 299 56.5
EL10Ac1g00871 Beta vulgaris HOM05D005501 ORTHO05D007485 4.0e-80 302.4 299 57.2
C04p06180 Brassica napus HOM05D005501 ORTHO05D007485 8.8e-80 301.2 300 56.0
THA.LOC104817237 Tarenaya hassleriana HOM05D005501 ORTHO05D007485 1.1e-79 300.8 304 56.2
Sed0024444 Sechium edule HOM05D005501 ORTHO05D007485 1.5e-79 300.4 277 62.8
Hund17031 Selenicereus undatus HOM05D005501 ORTHO05D007485 1.5e-79 300.4 310 55.8
BolC4t22243H Brassica oleracea HOM05D005501 ORTHO05D007485 2.0e-79 300.1 300 56.0
ATR0757G194 Amborella trichopoda HOM05D005501 ORTHO05D007485 2.6e-79 299.7 299 56.9
A05p05250 Brassica napus HOM05D005501 ORTHO05D007485 3.3e-79 299.3 300 55.7
BraA05t19495Z Brassica rapa HOM05D005501 ORTHO05D007485 3.3e-79 299.3 300 55.7
CDE11G1124 Ceratophyllum demersum HOM05D005501 ORTHO05D007485 9.7e-79 297.7 318 53.8
Eucgr.E01449 Eucalyptus grandis HOM05D005501 ORTHO05D007485 1.3e-78 297.4 299 56.9
Migut.B01618 Erythranthe guttata HOM05D005501 ORTHO05D007485 2.2e-78 296.6 299 55.2
ClCG05G002370 Citrullus lanatus HOM05D005501 ORTHO05D007485 2.8e-78 296.2 344 52.0
unitig_37.g12896 Utricularia gibba HOM05D005501 ORTHO05D007485 3.7e-78 295.8 301 56.5
CiPaw.01G263800 Carya illinoinensis HOM05D005501 ORTHO05D007485 6.3e-78 295.0 277 60.6
Ah.05g176650 Amaranthus hybridus HOM05D005501 ORTHO05D007485 1.2e-76 290.8 285 57.5
Zm00001eb129920 Zea mays HOM05D005501 ORTHO05D007485 3.5e-76 289.3 299 54.2
PSO478G3019 Papaver somniferum HOM05D005501 ORTHO05D007485 1.1e-74 284.3 302 55.3
PGR042G1853 Punica granatum HOM05D005501 ORTHO05D007485 1.9e-74 283.5 204 72.1
PSO782G1940 Papaver somniferum HOM05D005501 ORTHO05D007485 2.5e-74 283.1 302 55.3
HPP92_000383 Vanilla planifolia HOM05D005501 ORTHO05D007485 9.4e-74 281.2 291 55.3
arahy.Tifrunner.gnm1.ann1.M89JWR Arachis hypogaea HOM05D005501 ORTHO05D007485 3.6e-73 279.3 341 51.3
C04p08020 Brassica napus HOM05D005501 ORTHO05D007485 1.3e-70 270.8 291 54.0
Atru.chr5.287 Acer truncatum HOM05D005501 ORTHO05D007485 3.7e-70 269.2 211 66.4
BcaB02g08945 Brassica carinata HOM05D005501 ORTHO05D007485 1.8e-69 266.9 302 51.0
SGA_v2.0_scaffold95G28910 Striga asiatica HOM05D005501 ORTHO05D007485 3.5e-68 262.7 299 52.2
RcHm_v2.0_Chr1g0349801 Rosa chinensis HOM05D005501 ORTHO05D007485 1.3e-67 260.8 241 62.2
Haze_16794 Corylus avellana HOM05D005501 ORTHO05D007485 5.0e-67 258.8 216 66.2
Ciclev10021173m.g Citrus clementina HOM05D005501 ORTHO05D007485 1.2e-65 254.2 182 73.1
AUR62013652 Chenopodium quinoa HOM05D005501 ORTHO05D007485 5.7e-63 245.4 299 51.2
Pp3c15_10750 Physcomitrium patens HOM05D005501 ORTHO05D007485 1.7e-62 243.8 291 48.8
SalBow5G4090 Salvia bowleyana HOM05D005501 ORTHO05D007485 1.8e-61 240.4 176 70.5
AUR62025959 Chenopodium quinoa HOM05D005501 ORTHO05D007485 5.0e-59 232.3 321 48.6
SMO271G0013 Selaginella moellendorffii HOM05D005501 ORTHO05D007485 5.0e-59 232.3 291 47.4
Mapoly0019s0039 Marchantia polymorpha HOM05D005501 ORTHO05D007485 1.1e-58 231.1 296 45.9
AagrBONN_evm.TU.Sc2ySwM_117.1161 Anthoceros agrestis HOM05D005501 ORTHO05D007485 2.0e-55 220.3 291 43.3
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 2.9e-54 216.5 301 43.5
Psat0s3070g0040 Pisum sativum HOM05D005501 ORTHO05D007485 1.0e-51 208.0 232 51.7
Dinv32366 Davidia involucrata HOM05D005501 ORTHO05D007485 3.7e-46 189.5 157 68.2
TAR374G0513 Trochodendron aralioides HOM05D005501 ORTHO05D007485 8.3e-46 188.3 183 57.4
MCO07G252 Micromonas commoda HOM05D005501 ORTHO05D007485 8.1e-41 171.8 190 47.9
PRCOL_00001708 Prasinoderma coloniale HOM05D005501 ORTHO05D007485 2.2e-38 163.7 309 35.9
SEGI_07028 Sequoiadendron giganteum HOM05D005501 ORTHO05D007485 2.1e-36 157.1 188 47.9
Cre14.g615500 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 6.2e-33 145.6 435 27.6
EL10Ac2g02806 Beta vulgaris HOM05D005501 ORTHO05D014923 5.2e-32 142.5 123 63.4
EL10Ac9g20646 Beta vulgaris HOM05D005501 ORTHO05D007485 6.4e-30 135.6 112 63.4
Os01g0295900 Oryza sativa ssp. japonica HOM05D005501 ORTHO05D007485 5.4e-29 132.5 96 69.8
Os12g0485000 Oryza sativa ssp. japonica HOM05D005501 ORTHO05D007485 9.2e-29 131.7 96 68.8
Haze_26798 Corylus avellana HOM05D005501 ORTHO05D008444 4.6e-28 129.4 186 41.4
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 5.1e-27 125.9 168 42.3
Cre15.g639400 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 3.3e-26 123.2 217 37.8
Glyma.01G140002 Glycine max HOM05D005501 ORTHO05D007485 4.7e-25 119.4 95 65.3
SEGI_12424 Sequoiadendron giganteum HOM05D005501 ORTHO05D007485 1.2e-15 88.2 66 66.7
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 1.0e-11 75.1 185 29.2
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 3.9e-11 73.2 185 27.6
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 6.7e-11 72.4 185 27.6
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 5.6e-10 69.3 177 27.1
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 6.2e-09 65.9 150 28.0
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 8.1e-09 65.5 185 24.9
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 1.4e-08 64.7 185 28.1
MBI12_g18799_MAGBIO Magnolia biondii HOM05D005501 ORTHO05D007485 2.4e-08 63.9 36 80.6
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 2.4e-08 63.9 177 26.0
BcaC01g05144 Brassica carinata HOM05D005501 ORTHO05D007485 5.3e-08 62.8 39 71.8
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 6.9e-08 62.4 185 25.9


User provided reference genes

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