Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349801 Rosa chinensis HOM05D005501 ORTHO05D007485 2.5e-113 412.1 209 100.0
RcHm_v2.0_Chr1g0349931 Rosa chinensis HOM05D005501 ORTHO05D007485 1.1e-100 370.2 190 98.9
FvH4_7g11490 Fragaria vesca HOM05D005501 ORTHO05D007485 1.2e-99 366.7 190 97.9
FAN06G2192 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.2e-99 366.7 190 97.9
FAN10G2689 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.2e-99 366.7 190 97.9
FAN10G2758 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.2e-99 366.7 190 97.9
FAN06G3216 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.6e-99 366.3 190 97.4
FAN03G0203 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.6e-99 365.5 190 97.4
FAN01G2666 Fragaria x ananassa HOM05D005501 ORTHO05D007485 5.9e-99 364.4 190 96.3
Prupe.2G143300 Prunus persica HOM05D005501 ORTHO05D007485 9.7e-94 347.1 190 91.1
MD02G1206900 Malus domestica HOM05D005501 ORTHO05D007485 3.7e-93 345.1 190 90.5
GSVIVG01027664001 Vitis vinifera HOM05D005501 ORTHO05D007485 3.7e-93 345.1 190 88.9
CSS0010588 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 1.1e-92 343.6 190 88.4
CSS0024830 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 2.4e-92 342.4 190 87.9
Potri.014G067800 Populus trichocarpa HOM05D005501 ORTHO05D007485 5.3e-92 341.3 190 87.4
CANSAT56G2357 Cannabis sativa HOM05D005501 ORTHO05D007485 2.0e-91 339.3 190 85.3
vmacro13416 Vaccinium macrocarpon HOM05D005501 ORTHO05D007485 5.9e-91 337.8 190 86.8
Sed0024444 Sechium edule HOM05D005501 ORTHO05D007485 2.2e-90 335.9 190 87.4
MSTRG.20738 Avicennia marina HOM05D005501 ORTHO05D007485 5.0e-90 334.7 190 84.7
Aa31LG1G26800 Aethionema arabicum HOM05D005501 ORTHO05D007485 6.5e-90 334.3 190 84.7
Dinv43691 Davidia involucrata HOM05D005501 ORTHO05D007485 8.5e-90 334.0 190 86.8
Sed0021448 Sechium edule HOM05D005501 ORTHO05D007485 1.1e-89 333.6 190 86.3
Actinidia12246 Actinidia chinensis HOM05D005501 ORTHO05D007485 3.2e-89 332.0 197 83.2
QL08p052809 Quercus lobata HOM05D005501 ORTHO05D007485 3.2e-89 332.0 190 85.3
Hund17031 Selenicereus undatus HOM05D005501 ORTHO05D007485 1.2e-88 330.1 190 83.7
TWI14G0369 Tripterygium wilfordii HOM05D005501 ORTHO05D007485 1.6e-88 329.7 190 85.8
TAR374G1545 Trochodendron aralioides HOM05D005501 ORTHO05D007485 1.6e-88 329.7 190 84.7
Manes.01G266900 Manihot esculenta HOM05D005501 ORTHO05D007485 2.1e-88 329.3 190 84.7
TAR375G0004 Trochodendron aralioides HOM05D005501 ORTHO05D007485 2.1e-88 329.3 190 84.2
Cpa.g.sc18.102 Carica papaya HOM05D005501 ORTHO05D007485 2.7e-88 328.9 190 83.7
CiPaw.01G263800 Carya illinoinensis HOM05D005501 ORTHO05D007485 2.7e-88 328.9 190 85.8
Thhalv10001427m.g Eutrema salsugineum HOM05D005501 ORTHO05D007485 3.6e-88 328.6 190 82.6
Sc02g0002650 Simmondsia chinensis HOM05D005501 ORTHO05D007485 4.7e-88 328.2 190 83.2
MELO3C006202.2 Cucumis melo HOM05D005501 ORTHO05D007485 8.0e-88 327.4 190 84.2
CsaV3_3G009810 Cucumis sativus L. HOM05D005501 ORTHO05D007485 8.0e-88 327.4 190 84.2
Lj7C531T10 Lonicera japonica HOM05D005501 ORTHO05D007485 8.0e-88 327.4 190 83.7
HanXRQChr16g0519981 Helianthus annuus HOM05D005501 ORTHO05D007485 1.4e-87 326.6 190 83.7
Medtr4g024920 Medicago truncatula HOM05D005501 ORTHO05D007485 1.4e-87 326.6 190 84.2
Sabra14G0047700 Salix brachista HOM05D005501 ORTHO05D007485 1.8e-87 326.2 190 83.2
ClCG05G002370 Citrullus lanatus HOM05D005501 ORTHO05D007485 2.3e-87 325.9 190 84.2
Phvul.010G081700 Phaseolus vulgaris HOM05D005501 ORTHO05D007485 3.0e-87 325.5 190 82.6
TPR.G7589 Trifolium pratense HOM05D005501 ORTHO05D007485 4.0e-87 325.1 190 83.7
Nitab4.5_0001329g0140 Nicotiana tabacum HOM05D005501 ORTHO05D007485 5.2e-87 324.7 190 81.1
VMungo0331G1483 Vigna mungo HOM05D005501 ORTHO05D007485 5.2e-87 324.7 190 83.2
Nitab4.5_0003912g0080 Nicotiana tabacum HOM05D005501 ORTHO05D007485 6.8e-87 324.3 190 80.5
Glyma.03G027900 Glycine max HOM05D005501 ORTHO05D007485 1.2e-86 323.6 190 82.6
AL4G44370 Arabidopsis lyrata HOM05D005501 ORTHO05D007485 1.5e-86 323.2 190 81.6
Ca_19945_v3 Cicer arietinum L. HOM05D005501 ORTHO05D007485 2.0e-86 322.8 190 82.1
Lj3g0016597 Lotus japonicus HOM05D005501 ORTHO05D007485 2.0e-86 322.8 190 82.1
Lalb_Chr07g0189951 Lupinus albus HOM05D005501 ORTHO05D007485 2.0e-86 322.8 190 81.6
Peaxi162Scf00959g00124 Petunia axillaris HOM05D005501 ORTHO05D007485 2.6e-86 322.4 190 81.1
AT2G45270 Arabidopsis thaliana HOM05D005501 ORTHO05D007485 3.4e-86 322.0 190 81.1
EL10Ac1g00871 Beta vulgaris HOM05D005501 ORTHO05D007485 3.4e-86 322.0 190 83.2
COL.COLO4_12526 Corchorus olitorius HOM05D005501 ORTHO05D007485 3.4e-86 322.0 190 81.1
Cc02_g24090 Coffea canephora HOM05D005501 ORTHO05D007485 4.4e-86 321.6 190 81.1
CAN.G295.11 Capsicum annuum HOM05D005501 ORTHO05D007485 7.5e-86 320.9 190 80.5
Migut.B01618 Erythranthe guttata HOM05D005501 ORTHO05D007485 7.5e-86 320.9 190 81.1
AUR62004192 Chenopodium quinoa HOM05D005501 ORTHO05D007485 9.8e-86 320.5 190 82.6
Sp4g27290 Schrenkiella parvula HOM05D005501 ORTHO05D007485 9.8e-86 320.5 190 80.0
SpUn0031_0030 Schrenkiella parvula HOM05D005501 ORTHO05D007485 9.8e-86 320.5 190 80.0
Eucgr.E01449 Eucalyptus grandis HOM05D005501 ORTHO05D007485 1.7e-85 319.7 190 81.6
DCAR_002088 Daucus carota HOM05D005501 ORTHO05D007485 2.2e-85 319.3 190 82.1
Duzib133G0079 Durio zibethinus HOM05D005501 ORTHO05D007485 2.2e-85 319.3 190 79.5
THA.LOC104817237 Tarenaya hassleriana HOM05D005501 ORTHO05D007485 2.2e-85 319.3 190 80.5
arahy.Tifrunner.gnm1.ann1.J20DWG Arachis hypogaea HOM05D005501 ORTHO05D007485 2.8e-85 318.9 200 78.5
CARHR140480 Cardamine hirsuta HOM05D005501 ORTHO05D007485 2.8e-85 318.9 190 79.5
BraA05t19495Z Brassica rapa HOM05D005501 ORTHO05D007485 3.7e-85 318.5 190 79.5
Gohir.D08G156600 Gossypium hirsutum HOM05D005501 ORTHO05D007485 3.7e-85 318.5 190 79.5
Gorai.004G162900 Gossypium raimondii HOM05D005501 ORTHO05D007485 3.7e-85 318.5 190 79.5
Thecc.01G378900 Theobroma cacao HOM05D005501 ORTHO05D007485 6.3e-85 317.8 189 79.9
BcaC02g12231 Brassica carinata HOM05D005501 ORTHO05D007485 8.3e-85 317.4 190 78.9
C04p06180 Brassica napus HOM05D005501 ORTHO05D007485 8.3e-85 317.4 190 78.9
BolC4t22243H Brassica oleracea HOM05D005501 ORTHO05D007485 8.3e-85 317.4 190 79.5
Carub.0004s2787 Capsella rubella HOM05D005501 ORTHO05D007485 8.3e-85 317.4 190 79.5
Nn1g01133 Nelumbo nucifera HOM05D005501 ORTHO05D007485 1.1e-84 317.0 190 80.5
A05p05250 Brassica napus HOM05D005501 ORTHO05D007485 1.4e-84 316.6 190 78.9
Aqoxy7G00665 Aquilegia oxysepala HOM05D005501 ORTHO05D007485 2.4e-84 315.8 190 80.5
Gohir.A08G135800 Gossypium hirsutum HOM05D005501 ORTHO05D007485 2.4e-84 315.8 190 78.9
PGSC0003DMG401007021 Solanum tuberosum HOM05D005501 ORTHO05D007485 7.0e-84 314.3 190 78.4
Psat0s3070g0040 Pisum sativum HOM05D005501 ORTHO05D007485 9.1e-84 313.9 184 83.2
Oeu055503.2 Olea europaea HOM05D005501 ORTHO05D007485 1.2e-83 313.5 206 76.2
Sopen05g029410 Solanum pennellii HOM05D005501 ORTHO05D007485 1.2e-83 313.5 190 78.4
unitig_37.g12896 Utricularia gibba HOM05D005501 ORTHO05D007485 1.2e-83 313.5 192 79.2
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 1.6e-83 313.2 190 80.0
BcaB02g08945 Brassica carinata HOM05D005501 ORTHO05D007485 3.5e-83 312.0 190 77.9
BcaB02g08946 Brassica carinata HOM05D005501 ORTHO05D007485 3.5e-83 312.0 190 77.9
Ah.05g176650 Amaranthus hybridus HOM05D005501 ORTHO05D007485 4.5e-83 311.6 190 79.5
Solyc05g050940.4 Solanum lycopersicum HOM05D005501 ORTHO05D007485 5.9e-83 311.2 190 77.9
MBI04_g44162_MAGBIO Magnolia biondii HOM05D005501 ORTHO05D007485 2.9e-82 308.9 190 80.0
Lsat_1_v5_gn_4_43120 Lactuca sativa HOM05D005501 ORTHO05D007485 5.0e-82 308.1 190 79.5
ATR0757G194 Amborella trichopoda HOM05D005501 ORTHO05D007485 3.6e-80 302.0 191 79.6
PSO478G3019 Papaver somniferum HOM05D005501 ORTHO05D007485 2.3e-79 299.3 190 77.9
C04p08020 Brassica napus HOM05D005501 ORTHO05D007485 5.2e-79 298.1 190 75.8
CDE11G1124 Ceratophyllum demersum HOM05D005501 ORTHO05D007485 8.9e-79 297.4 210 71.4
PSO782G1940 Papaver somniferum HOM05D005501 ORTHO05D007485 3.4e-78 295.4 190 76.8
Zm00001eb129920 Zea mays HOM05D005501 ORTHO05D007485 3.4e-78 295.4 191 73.8
arahy.Tifrunner.gnm1.ann1.M89JWR Arachis hypogaea HOM05D005501 ORTHO05D007485 4.9e-77 291.6 241 64.3
HPP92_000383 Vanilla planifolia HOM05D005501 ORTHO05D007485 2.4e-76 289.3 191 74.3
SGA_v2.0_scaffold95G28910 Striga asiatica HOM05D005501 ORTHO05D007485 4.7e-72 275.0 190 72.1
SMO271G0013 Selaginella moellendorffii HOM05D005501 ORTHO05D007485 2.6e-70 269.2 190 65.8
Pp3c15_10750 Physcomitrium patens HOM05D005501 ORTHO05D007485 4.4e-70 268.5 190 67.4
PGR042G1853 Punica granatum HOM05D005501 ORTHO05D007485 1.7e-69 266.5 164 80.5
Ciclev10021173m.g Citrus clementina HOM05D005501 ORTHO05D007485 2.2e-69 266.2 164 78.7
RcHm_v2.0_Chr1g0349851 Rosa chinensis HOM05D005501 ORTHO05D007485 7.0e-68 261.2 241 62.2
TAR374G0513 Trochodendron aralioides HOM05D005501 ORTHO05D007485 2.0e-67 259.6 147 85.7
Mapoly0019s0039 Marchantia polymorpha HOM05D005501 ORTHO05D007485 7.8e-67 257.7 193 64.8
AUR62013652 Chenopodium quinoa HOM05D005501 ORTHO05D007485 5.6e-65 251.5 193 68.9
AagrBONN_evm.TU.Sc2ySwM_117.1161 Anthoceros agrestis HOM05D005501 ORTHO05D007485 1.2e-64 250.4 191 60.2
AUR62025959 Chenopodium quinoa HOM05D005501 ORTHO05D007485 1.6e-64 250.0 205 66.3
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 1.8e-63 246.5 191 64.9
SEGI_07028 Sequoiadendron giganteum HOM05D005501 ORTHO05D007485 2.3e-63 246.1 164 72.6
Atru.chr5.287 Acer truncatum HOM05D005501 ORTHO05D007485 2.7e-59 232.6 136 81.6
Haze_16794 Corylus avellana HOM05D005501 ORTHO05D007485 8.6e-50 201.1 137 73.7
SalBow5G4090 Salvia bowleyana HOM05D005501 ORTHO05D007485 6.8e-47 191.4 106 84.0
MCO07G252 Micromonas commoda HOM05D005501 ORTHO05D007485 4.9e-45 185.3 183 53.0
Cre14.g615500 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 2.5e-41 172.9 158 52.5
PRCOL_00001708 Prasinoderma coloniale HOM05D005501 ORTHO05D007485 1.1e-39 167.5 223 42.6
Glyma.01G140002 Glycine max HOM05D005501 ORTHO05D007485 2.4e-39 166.4 95 83.2
EL10Ac2g02806 Beta vulgaris HOM05D005501 ORTHO05D014923 6.9e-39 164.9 136 65.4
EL10Ac9g20646 Beta vulgaris HOM05D005501 ORTHO05D007485 1.0e-34 151.0 126 62.7
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 1.1e-33 147.5 155 51.0
Haze_26798 Corylus avellana HOM05D005501 ORTHO05D008444 1.9e-28 130.2 177 44.1
Dinv32366 Davidia involucrata HOM05D005501 ORTHO05D007485 3.9e-26 122.5 88 72.7
Cre15.g639400 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 3.4e-22 109.4 148 41.9
BcaC01g05144 Brassica carinata HOM05D005501 ORTHO05D007485 1.4e-15 87.4 66 66.7
BcaC02g12086 Brassica carinata HOM05D005501 ORTHO05D007485 1.2e-14 84.3 54 75.9
arahy.Tifrunner.gnm1.ann1.Z7MJ9S Arachis hypogaea HOM05D005501 ORTHO05D007485 9.7e-09 64.7 65 56.9
MBI12_g18799_MAGBIO Magnolia biondii HOM05D005501 ORTHO05D007485 1.3e-08 64.3 36 80.6


User provided reference genes

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