Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349791 Rosa chinensis HOM05D005501 ORTHO05D007485 1.2e-83 313.2 161 100.0
RcHm_v2.0_Chr1g0349931 Rosa chinensis HOM05D005501 ORTHO05D007485 1.1e-57 226.9 125 95.2
FAN03G0203 Fragaria x ananassa HOM05D005501 ORTHO05D007485 3.4e-46 188.7 131 81.7
FvH4_7g11490 Fragaria vesca HOM05D005501 ORTHO05D007485 2.9e-45 185.7 131 80.9
FAN06G3216 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.9e-45 185.7 131 80.9
FAN10G2758 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.9e-45 185.7 131 80.9
FAN06G2192 Fragaria x ananassa HOM05D005501 ORTHO05D007485 8.4e-45 184.1 131 80.2
FAN10G2689 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.4e-44 183.3 131 80.2
FAN01G2666 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.4e-44 182.6 131 79.4
MD02G1206900 Malus domestica HOM05D005501 ORTHO05D007485 4.9e-37 158.3 135 68.9
Prupe.2G143300 Prunus persica HOM05D005501 ORTHO05D007485 4.2e-36 155.2 133 66.9
Sed0021448 Sechium edule HOM05D005501 ORTHO05D007485 1.1e-25 120.6 126 61.9
ClCG05G002370 Citrullus lanatus HOM05D005501 ORTHO05D007485 4.3e-25 118.6 130 56.9
Manes.01G266900 Manihot esculenta HOM05D005501 ORTHO05D007485 7.4e-25 117.9 131 56.5
MELO3C006202.2 Cucumis melo HOM05D005501 ORTHO05D007485 3.7e-24 115.5 128 58.6
CANSAT56G2357 Cannabis sativa HOM05D005501 ORTHO05D007485 1.1e-23 114.0 135 56.3
Potri.014G067800 Populus trichocarpa HOM05D005501 ORTHO05D007485 3.1e-23 112.5 128 57.0
CSS0010588 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 1.2e-22 110.5 132 56.8
CSS0024830 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 2.0e-22 109.8 132 56.8
Dinv43691 Davidia involucrata HOM05D005501 ORTHO05D007485 2.0e-22 109.8 129 55.8
Gorai.004G162900 Gossypium raimondii HOM05D005501 ORTHO05D007485 2.6e-22 109.4 137 51.8
Sabra14G0047700 Salix brachista HOM05D005501 ORTHO05D007485 3.4e-22 109.0 129 58.9
CsaV3_3G009810 Cucumis sativus L. HOM05D005501 ORTHO05D007485 5.9e-22 108.2 131 55.0
Gohir.A08G135800 Gossypium hirsutum HOM05D005501 ORTHO05D007485 1.0e-21 107.5 137 51.1
Gohir.D08G156600 Gossypium hirsutum HOM05D005501 ORTHO05D007485 1.0e-21 107.5 137 52.6
Actinidia12246 Actinidia chinensis HOM05D005501 ORTHO05D007485 1.7e-21 106.7 131 58.0
GSVIVG01027664001 Vitis vinifera HOM05D005501 ORTHO05D007485 1.7e-21 106.7 131 55.0
QL08p052809 Quercus lobata HOM05D005501 ORTHO05D007485 2.9e-21 105.9 129 54.3
Cc02_g24090 Coffea canephora HOM05D005501 ORTHO05D007485 3.8e-21 105.5 133 51.9
Nn1g01133 Nelumbo nucifera HOM05D005501 ORTHO05D007485 3.8e-21 105.5 134 53.7
vmacro13416 Vaccinium macrocarpon HOM05D005501 ORTHO05D007485 5.0e-21 105.1 129 55.8
Thecc.01G378900 Theobroma cacao HOM05D005501 ORTHO05D007485 6.5e-21 104.8 135 52.6
arahy.Tifrunner.gnm1.ann1.M89JWR Arachis hypogaea HOM05D005501 ORTHO05D007485 1.4e-20 103.6 125 55.2
BcaB02g08946 Brassica carinata HOM05D005501 ORTHO05D007485 1.9e-20 103.2 131 51.9
Duzib133G0079 Durio zibethinus HOM05D005501 ORTHO05D007485 1.9e-20 103.2 137 49.6
TAR374G1545 Trochodendron aralioides HOM05D005501 ORTHO05D007485 1.9e-20 103.2 130 53.1
COL.COLO4_12526 Corchorus olitorius HOM05D005501 ORTHO05D007485 4.2e-20 102.1 137 53.3
Atru.chr5.287 Acer truncatum HOM05D005501 ORTHO05D007485 5.5e-20 101.7 123 54.5
TAR375G0004 Trochodendron aralioides HOM05D005501 ORTHO05D007485 5.5e-20 101.7 134 53.0
VMungo0331G1483 Vigna mungo HOM05D005501 ORTHO05D007485 7.2e-20 101.3 125 51.2
Aqoxy7G00665 Aquilegia oxysepala HOM05D005501 ORTHO05D007485 1.2e-19 100.5 125 49.6
Dinv32366 Davidia involucrata HOM05D005501 ORTHO05D007485 1.2e-19 100.5 58 86.2
Lalb_Chr07g0189951 Lupinus albus HOM05D005501 ORTHO05D007485 2.1e-19 99.8 125 52.8
DCAR_002088 Daucus carota HOM05D005501 ORTHO05D007485 3.6e-19 99.0 72 72.2
Medtr4g024920 Medicago truncatula HOM05D005501 ORTHO05D007485 3.6e-19 99.0 66 75.8
Carub.0004s2787 Capsella rubella HOM05D005501 ORTHO05D007485 4.7e-19 98.6 134 49.3
Lsat_1_v5_gn_4_43120 Lactuca sativa HOM05D005501 ORTHO05D007485 4.7e-19 98.6 131 50.4
Phvul.010G081700 Phaseolus vulgaris HOM05D005501 ORTHO05D007485 4.7e-19 98.6 125 51.2
PGR042G1853 Punica granatum HOM05D005501 ORTHO05D007485 4.7e-19 98.6 128 50.8
arahy.Tifrunner.gnm1.ann1.J20DWG Arachis hypogaea HOM05D005501 ORTHO05D007485 1.0e-18 97.4 134 52.2
Oeu055503.2 Olea europaea HOM05D005501 ORTHO05D007485 1.0e-18 97.4 58 82.8
CDE11G1124 Ceratophyllum demersum HOM05D005501 ORTHO05D007485 1.4e-18 97.1 58 82.8
Glyma.03G027900 Glycine max HOM05D005501 ORTHO05D007485 1.4e-18 97.1 126 50.0
Lj7C531T10 Lonicera japonica HOM05D005501 ORTHO05D007485 1.4e-18 97.1 147 46.3
MBI04_g44162_MAGBIO Magnolia biondii HOM05D005501 ORTHO05D007485 1.8e-18 96.7 138 50.0
Migut.B01618 Erythranthe guttata HOM05D005501 ORTHO05D007485 2.3e-18 96.3 126 51.6
Thhalv10001427m.g Eutrema salsugineum HOM05D005501 ORTHO05D007485 3.0e-18 95.9 136 50.0
PSO782G1940 Papaver somniferum HOM05D005501 ORTHO05D007485 3.0e-18 95.9 126 49.2
SalBow5G4090 Salvia bowleyana HOM05D005501 ORTHO05D007485 3.0e-18 95.9 126 52.4
TWI14G0369 Tripterygium wilfordii HOM05D005501 ORTHO05D007485 3.0e-18 95.9 133 53.4
BcaC02g12231 Brassica carinata HOM05D005501 ORTHO05D007485 3.9e-18 95.5 133 49.6
C04p06180 Brassica napus HOM05D005501 ORTHO05D007485 3.9e-18 95.5 133 49.6
Sp4g27290 Schrenkiella parvula HOM05D005501 ORTHO05D007485 3.9e-18 95.5 137 49.6
SpUn0031_0030 Schrenkiella parvula HOM05D005501 ORTHO05D007485 3.9e-18 95.5 137 49.6
AT2G45270 Arabidopsis thaliana HOM05D005501 ORTHO05D007485 5.1e-18 95.1 136 48.5
Lj3g0016597 Lotus japonicus HOM05D005501 ORTHO05D007485 5.1e-18 95.1 58 81.0
MSTRG.20738 Avicennia marina HOM05D005501 ORTHO05D007485 6.7e-18 94.7 123 50.4
BolC4t22243H Brassica oleracea HOM05D005501 ORTHO05D007485 6.7e-18 94.7 132 48.5
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 6.7e-18 94.7 57 82.5
PGSC0003DMG401007021 Solanum tuberosum HOM05D005501 ORTHO05D007485 6.7e-18 94.7 123 52.0
A05p05250 Brassica napus HOM05D005501 ORTHO05D007485 8.8e-18 94.4 132 49.2
BraA05t19495Z Brassica rapa HOM05D005501 ORTHO05D007485 8.8e-18 94.4 132 49.2
Sopen05g029410 Solanum pennellii HOM05D005501 ORTHO05D007485 8.8e-18 94.4 123 51.2
TPR.G7589 Trifolium pratense HOM05D005501 ORTHO05D007485 1.1e-17 94.0 119 49.6
BcaB02g08945 Brassica carinata HOM05D005501 ORTHO05D007485 2.0e-17 93.2 68 70.6
Ca_19945_v3 Cicer arietinum L. HOM05D005501 ORTHO05D007485 2.0e-17 93.2 117 51.3
Aa31LG1G26800 Aethionema arabicum HOM05D005501 ORTHO05D007485 2.6e-17 92.8 137 51.1
Solyc05g050940.4 Solanum lycopersicum HOM05D005501 ORTHO05D007485 2.6e-17 92.8 123 51.2
AL4G44370 Arabidopsis lyrata HOM05D005501 ORTHO05D007485 3.3e-17 92.4 128 50.8
HanXRQChr16g0519981 Helianthus annuus HOM05D005501 ORTHO05D007485 3.3e-17 92.4 130 50.0
EL10Ac1g00871 Beta vulgaris HOM05D005501 ORTHO05D007485 4.4e-17 92.0 64 71.9
Zm00001eb129920 Zea mays HOM05D005501 ORTHO05D007485 4.4e-17 92.0 60 75.0
CARHR140480 Cardamine hirsuta HOM05D005501 ORTHO05D007485 7.4e-17 91.3 132 49.2
AUR62013652 Chenopodium quinoa HOM05D005501 ORTHO05D007485 9.7e-17 90.9 57 78.9
AUR62025959 Chenopodium quinoa HOM05D005501 ORTHO05D007485 9.7e-17 90.9 57 78.9
Cpa.g.sc18.102 Carica papaya HOM05D005501 ORTHO05D007485 1.3e-16 90.5 124 49.2
Sc02g0002650 Simmondsia chinensis HOM05D005501 ORTHO05D007485 1.3e-16 90.5 107 54.2
unitig_37.g12896 Utricularia gibba HOM05D005501 ORTHO05D007485 1.7e-16 90.1 91 58.2
THA.LOC104817237 Tarenaya hassleriana HOM05D005501 ORTHO05D007485 2.2e-16 89.7 132 46.2
CAN.G295.11 Capsicum annuum HOM05D005501 ORTHO05D007485 2.8e-16 89.4 125 50.4
PSO478G3019 Papaver somniferum HOM05D005501 ORTHO05D007485 2.8e-16 89.4 132 46.2
AUR62004192 Chenopodium quinoa HOM05D005501 ORTHO05D007485 6.3e-16 88.2 119 50.4
SEGI_12424 Sequoiadendron giganteum HOM05D005501 ORTHO05D007485 8.2e-16 87.8 70 67.1
SGA_v2.0_scaffold95G28910 Striga asiatica HOM05D005501 ORTHO05D007485 8.2e-16 87.8 95 56.8
Os01g0295900 Oryza sativa ssp. japonica HOM05D005501 ORTHO05D007485 1.1e-15 87.4 62 71.0
ATR0757G194 Amborella trichopoda HOM05D005501 ORTHO05D007485 3.1e-15 85.9 55 78.2
Eucgr.E01449 Eucalyptus grandis HOM05D005501 ORTHO05D007485 4.1e-15 85.5 57 73.7
Hund17031 Selenicereus undatus HOM05D005501 ORTHO05D007485 1.6e-11 73.6 99 45.5
Mapoly0019s0039 Marchantia polymorpha HOM05D005501 ORTHO05D007485 6.1e-11 71.6 58 56.9
Pp3c15_10750 Physcomitrium patens HOM05D005501 ORTHO05D007485 1.0e-10 70.9 56 57.1
Nitab4.5_0003912g0080 Nicotiana tabacum HOM05D005501 ORTHO05D007485 2.6e-09 66.2 38 86.8
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 1.3e-08 63.9 96 40.6
Ah.05g176650 Amaranthus hybridus HOM05D005501 ORTHO05D007485 1.7e-08 63.5 58 56.9
Cre15.g639400 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 1.7e-08 63.5 57 52.6
Psat0s3070g0080 Pisum sativum HOM05D005501 ORTHO05D050377 2.8e-08 62.8 106 44.3
SMO271G0013 Selaginella moellendorffii HOM05D005501 ORTHO05D007485 2.8e-08 62.8 56 58.9
Cre14.g615500 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 3.7e-08 62.4 55 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1161 Anthoceros agrestis HOM05D005501 ORTHO05D007485 4.8e-08 62.0 67 41.8
Nitab4.5_0001329g0140 Nicotiana tabacum HOM05D005501 ORTHO05D007485 2.4e-07 59.7 44 75.0
Peaxi162Scf00959g00124 Petunia axillaris HOM05D005501 ORTHO05D007485 2.4e-07 59.7 130 41.5
PRCOL_00001708 Prasinoderma coloniale HOM05D005501 ORTHO05D007485 2.4e-07 59.7 55 50.9
MCO07G252 Micromonas commoda HOM05D005501 ORTHO05D007485 7.0e-07 58.2 57 47.4
Os12g0485000 Oryza sativa ssp. japonica HOM05D005501 ORTHO05D007485 9.1e-07 57.8 39 69.2
Psat1g143840 Pisum sativum HOM05D005501 ORTHO05D050377 2.6e-06 56.2 95 43.2
Haze_26798 Corylus avellana HOM05D005501 ORTHO05D008444 5.9e-06 55.1 80 42.5
Haze_16794 Corylus avellana HOM05D005501 ORTHO05D007485 7.7e-06 54.7 76 46.1


User provided reference genes

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