Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 6.9e-241 837.8 798 100.0
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.5e-123 446.4 464 74.8
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.3e-118 430.3 423 80.6
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.3e-116 422.9 444 81.3
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.2e-115 421.8 413 80.6
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.4e-113 412.1 368 82.1
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.4e-105 385.6 441 75.5
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 9.8e-102 375.6 212 92.0
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 2.4e-100 370.9 382 81.7
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 3.1e-100 370.5 212 90.6
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.9e-97 361.3 210 89.0
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 9.5e-97 359.0 212 88.7
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 3.0e-95 354.0 213 86.4
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.0e-95 354.0 213 86.4
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 3.0e-95 354.0 210 87.6
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 3.4e-94 350.5 212 86.8
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 3.4e-94 350.5 212 87.3
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 4.4e-94 350.1 210 85.7
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 5.7e-94 349.7 210 85.7
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 7.5e-94 349.4 210 85.2
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 7.5e-94 349.4 269 76.6
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 9.8e-94 349.0 209 85.6
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 1.3e-93 348.6 210 85.2
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.3e-93 348.6 208 86.5
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 1.7e-93 348.2 213 85.4
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 2.2e-93 347.8 212 85.8
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.8e-93 347.4 205 87.8
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 4.9e-93 346.7 210 86.2
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 4.9e-93 346.7 210 85.2
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 6.3e-93 346.3 210 84.8
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 8.3e-93 345.9 210 84.8
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 8.3e-93 345.9 209 86.1
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 8.3e-93 345.9 212 84.9
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.4e-92 345.1 212 84.0
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.4e-92 345.1 210 85.7
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.8e-92 344.7 212 84.9
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 3.2e-92 344.0 210 85.2
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 3.2e-92 344.0 207 87.0
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 4.1e-92 343.6 221 83.3
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 4.1e-92 343.6 210 83.3
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 4.1e-92 343.6 213 85.9
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 4.1e-92 343.6 212 84.4
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 7.0e-92 342.8 212 84.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 9.2e-92 342.4 209 86.6
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.2e-91 342.0 208 84.1
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.2e-91 342.0 213 84.0
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 2.0e-91 341.3 210 84.8
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 2.0e-91 341.3 210 84.3
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.5e-91 340.5 212 84.4
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 3.5e-91 340.5 209 84.2
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 5.9e-91 339.7 212 84.4
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 7.8e-91 339.3 213 84.5
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 7.8e-91 339.3 212 85.4
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 1.0e-90 339.0 209 83.3
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.3e-90 338.6 210 84.3
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.7e-90 338.2 211 83.9
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.7e-90 338.2 210 85.7
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.3e-90 337.8 209 82.8
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 3.9e-90 337.0 209 83.7
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 3.9e-90 337.0 209 82.3
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 5.0e-90 336.7 204 86.3
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 5.0e-90 336.7 204 86.3
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 5.0e-90 336.7 267 74.9
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 5.0e-90 336.7 220 83.2
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 6.6e-90 336.3 209 82.3
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 6.6e-90 336.3 210 84.3
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 6.6e-90 336.3 209 82.3
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.1e-89 335.5 211 82.5
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.1e-89 335.5 210 83.8
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.1e-89 335.5 210 83.8
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.9e-89 334.7 209 83.7
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 3.3e-89 334.0 211 82.0
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 3.3e-89 334.0 209 81.8
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 4.3e-89 333.6 210 82.4
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 5.6e-89 333.2 211 81.0
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 5.6e-89 333.2 203 85.7
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 7.3e-89 332.8 209 84.2
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 4.7e-88 330.1 212 80.7
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 8.0e-88 329.3 210 82.4
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.0e-87 328.9 209 80.4
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 4.4e-86 323.6 206 81.1
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 4.4e-86 323.6 251 72.1
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 7.5e-86 322.8 196 85.7
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 3.2e-84 317.4 202 81.7
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 3.2e-84 317.4 195 83.1
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 3.0e-82 310.8 212 76.4
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 5.0e-82 310.1 212 75.9
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 3.3e-81 307.4 267 62.5
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.6e-80 305.1 212 73.1
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.8e-79 301.6 262 63.7
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 2.3e-79 301.2 210 75.2
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 2.9e-77 294.3 178 86.5
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.1e-75 288.1 189 79.9
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 7.8e-75 286.2 180 81.7
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 8.6e-74 282.7 182 79.1
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 2.8e-72 277.7 213 67.6
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 8.9e-71 272.7 225 68.4
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 2.2e-69 268.1 205 66.3
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.9e-68 265.0 202 66.3
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.7e-67 261.2 202 69.8
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 6.0e-67 260.0 193 68.4
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 8.6e-66 256.1 195 66.7
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.6e-62 244.6 188 70.7
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 7.6e-62 243.0 157 82.2
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 2.7e-59 234.6 160 78.1
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.3e-58 231.5 171 73.1
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 3.2e-52 211.1 228 60.5
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.8e-40 171.4 156 56.4
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 3.0e-34 151.4 94 83.0
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 3.1e-31 141.4 115 61.7
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.4e-28 132.5 103 72.8
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.3e-26 125.9 201 40.8
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 5.1e-26 124.0 79 79.7
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.8e-23 115.5 82 75.6
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 2.4e-23 115.2 198 36.4
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 3.1e-23 114.8 75 78.7
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 1.7e-21 109.0 64 84.4
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 5.5e-20 104.0 120 53.3
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 6.1e-19 100.5 63 79.4
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.5e-17 95.9 180 37.2
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.3e-17 94.7 56 82.1
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 5.7e-17 94.0 63 76.2
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.7e-16 92.4 107 48.6
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.2e-16 92.0 59 72.9
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.4e-15 89.4 168 36.3
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 2.4e-15 88.6 62 72.6
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 5.9e-14 84.0 142 33.1
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 5.9e-14 84.0 142 33.1
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 8.5e-13 80.1 51 74.5
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 8.5e-13 80.1 159 36.5
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 6.7e-10 70.5 59 66.1
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 1.8e-07 62.4 35 80.0
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 2.4e-07 62.0 36 80.6
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 7.0e-07 60.5 148 27.0


User provided reference genes

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