Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 2104.7 1072 100.0
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1947.9 1073 93.2
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1933.3 1074 92.5
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1924.1 1074 92.5
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1855.5 1075 87.1
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1747.3 1073 81.9
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1718.4 1077 81.1
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1710.3 1115 78.4
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1709.9 1072 80.8
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1706.4 1075 80.5
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1699.9 1079 79.0
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1698.7 1073 79.3
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1697.6 948 89.7
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1695.6 1073 79.2
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1694.5 1077 80.2
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1686.0 1074 79.6
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1680.2 1073 78.7
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1676.0 1073 78.5
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1672.9 1073 78.2
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1666.0 1073 79.0
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1658.3 1074 77.9
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1652.5 1083 76.6
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1639.0 1078 76.6
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1634.4 1079 75.7
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1627.1 868 95.4
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1624.0 1073 77.4
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1622.8 1072 76.3
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1622.8 1073 75.7
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1620.1 1073 76.1
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1616.7 1078 75.7
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1616.3 1081 76.3
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1615.9 1093 75.9
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1615.9 1076 75.7
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1605.5 1000 79.1
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1604.3 1075 75.5
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1604.0 1074 74.8
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1597.0 1072 76.3
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1595.9 1074 73.9
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1594.3 1079 74.6
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1591.2 1076 74.0
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1588.2 1079 74.6
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1587.8 1085 73.5
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1579.3 1077 74.0
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1577.0 1084 73.5
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1573.1 1073 73.7
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1572.0 1076 73.9
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1569.3 1079 72.8
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1565.8 1070 73.5
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1565.1 1075 74.1
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1563.1 1077 74.6
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1556.2 1099 72.7
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1550.8 1073 72.9
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1546.9 1076 72.7
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1545.4 1078 72.4
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1535.0 971 78.6
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1523.1 1114 70.7
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1520.8 1080 72.7
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1518.4 1147 69.3
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1517.7 1097 71.6
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1517.3 1080 72.6
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1508.8 1077 72.1
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1508.4 1074 72.7
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1508.0 1164 68.0
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1506.1 1078 72.2
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1502.3 1075 71.6
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1494.2 988 74.8
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1489.2 947 77.9
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1488.4 949 80.0
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1483.8 998 74.6
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1482.2 1225 64.7
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1466.8 965 75.9
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1446.4 1099 68.6
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1437.2 1063 68.5
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1419.4 1075 67.7
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1416.7 1005 69.8
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1397.9 978 71.8
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1349.3 978 67.9
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1315.4 889 76.0
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1307.4 1090 65.0
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1297.3 1193 59.1
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1275.4 1033 62.2
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1274.2 1123 61.3
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1269.6 1033 62.7
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1263.4 1040 62.3
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1231.9 968 66.7
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1152.9 1008 56.8
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1130.9 1135 54.9
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 0.0e+00 1089.3 663 81.7
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 1.1e-305 1053.5 1012 54.7
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 2.1e-301 1039.3 751 69.6
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 2.6e-299 1032.3 1098 53.3
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 4.9e-298 1028.1 1004 55.8
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.9e-289 999.6 1023 52.3
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.7e-287 993.0 1033 50.7
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.8e-268 929.9 597 78.9
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 6.2e-261 904.8 619 74.2
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 3.6e-224 782.7 497 79.7
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 7.9e-224 781.6 584 66.3
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 2.9e-210 736.5 518 73.4
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 1.8e-204 717.2 635 62.2
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 4.2e-201 706.1 470 73.6
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.6e-195 687.6 815 51.3
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 9.2e-180 635.2 459 70.2
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 4.6e-179 632.9 383 84.6
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 1.4e-172 611.3 410 74.6
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 2.4e-172 610.5 630 57.1
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 4.3e-169 599.7 397 75.6
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 9.6e-153 545.4 313 89.8
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 5.3e-151 539.7 361 79.2
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 7.4e-137 492.7 325 75.4
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 5.1e-130 469.9 392 64.0
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 2.1e-128 464.5 343 73.5
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.5e-126 458.4 285 80.0
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 6.5e-117 426.4 294 71.4
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.5e-117 426.4 816 38.4
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.0e-102 378.3 236 77.1
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.7e-98 363.2 241 76.3
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.6e-83 314.3 220 72.7
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 8.8e-82 309.7 307 48.2
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 2.2e-64 251.9 175 78.3
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 1.0e-53 216.5 174 63.8
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 1.0e-53 216.5 188 64.4
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 1.4e-50 206.1 142 73.9
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 9.6e-44 183.3 150 60.0
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.2e-43 183.0 127 81.9
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.2e-43 183.0 127 81.9
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.9e-36 159.1 147 57.1
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.3e-35 156.4 112 69.6
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.3e-35 156.4 99 76.8
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.6e-35 154.8 138 55.1
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 4.0e-34 151.4 105 72.4
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 2.6e-33 148.7 127 56.7
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 9.9e-33 146.7 203 42.4
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.6e-30 139.4 103 63.1
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 1.8e-29 136.0 83 78.3
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 5.1e-29 134.4 90 70.0
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.9e-28 132.5 88 72.7
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 2.2e-24 119.0 121 52.1
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 6.4e-24 117.5 75 73.3
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 6.0e-22 110.9 92 64.1
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 3.3e-20 105.1 197 38.6
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 3.3e-20 105.1 132 46.2
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.0e-17 95.9 67 74.6
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.6e-17 94.0 69 63.8
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 5.5e-15 87.8 109 50.5
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 3.5e-14 85.1 54 72.2
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 2.5e-12 79.0 55 69.1
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 4.5e-09 68.2 59 61.0
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 7.6e-09 67.4 46 69.6
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 7.6e-09 67.4 46 69.6
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 7.6e-09 67.4 46 69.6
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 1.3e-08 66.6 46 69.6
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 6.5e-08 64.3 46 67.4
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 8.5e-08 63.9 45 64.4
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 1.1e-07 63.5 46 65.2
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 3.2e-07 62.0 37 75.7
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 5.5e-07 61.2 55 56.4
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 1.2e-06 60.1 45 57.8
CAN.G1473.1 Capsicum annuum HOM05D004422 ORTHO05D013213 6.1e-06 57.8 56 51.8


User provided reference genes

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