Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 1.5e-71 272.7 134 100.0
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-71 272.7 134 100.0
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-71 272.7 134 100.0
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 1.5e-71 272.7 134 100.0
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.3e-71 271.6 134 99.3
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.7e-71 270.8 132 100.0
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.7e-70 269.2 134 99.3
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 5.0e-67 257.7 134 93.3
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 6.5e-67 257.3 132 95.5
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 8.5e-67 256.9 157 84.1
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 4.2e-66 254.6 130 94.6
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 4.2e-66 254.6 131 94.7
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 4.2e-66 254.6 129 96.1
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 5.5e-66 254.2 129 96.1
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 9.4e-66 253.4 131 93.9
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.2e-65 253.1 131 93.9
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 1.2e-65 253.1 131 93.9
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.6e-65 252.7 131 93.1
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 1.6e-65 252.7 136 91.2
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 3.6e-65 251.5 133 92.5
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 4.7e-65 251.1 131 92.4
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 6.1e-65 250.8 132 92.4
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 8.0e-65 250.4 131 92.4
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.0e-64 250.0 134 90.3
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.0e-64 250.0 133 91.7
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.0e-64 250.0 132 92.4
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 1.0e-64 250.0 132 92.4
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.4e-64 249.6 132 91.7
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.4e-64 249.6 132 91.7
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.0e-64 248.1 131 91.6
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 4.0e-64 248.1 132 90.9
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 4.0e-64 248.1 129 92.2
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.5e-63 246.1 133 90.2
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 2.6e-63 245.4 133 91.0
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.4e-63 244.6 131 90.1
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.4e-63 244.6 131 90.1
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 4.4e-63 244.6 131 89.3
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 9.7e-63 243.4 129 91.5
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 1.3e-62 243.0 132 90.9
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 2.2e-62 242.3 129 91.5
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 2.2e-62 242.3 131 89.3
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 3.7e-62 241.5 129 89.9
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 4.8e-62 241.1 131 87.8
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 4.8e-62 241.1 131 88.5
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.8e-62 241.1 133 89.5
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 4.8e-62 241.1 133 89.5
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 6.3e-62 240.7 133 88.0
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 8.2e-62 240.4 134 88.1
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.1e-61 240.0 127 90.6
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.1e-61 240.0 128 90.6
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 1.1e-61 240.0 131 88.5
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.4e-61 239.6 129 89.9
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.8e-61 239.2 133 88.0
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.8e-61 239.2 127 89.8
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.4e-61 238.8 133 88.0
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 2.4e-61 238.8 134 85.8
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 3.1e-61 238.4 131 88.5
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 3.1e-61 238.4 134 87.3
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.1e-61 238.4 132 87.9
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 5.3e-61 237.7 131 87.8
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 5.3e-61 237.7 131 88.5
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 5.3e-61 237.7 133 88.0
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 7.0e-61 237.3 131 87.8
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.2e-60 236.5 133 88.0
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.2e-60 236.5 129 89.1
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.6e-60 236.1 133 88.0
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.0e-60 235.7 133 87.2
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 2.6e-60 235.3 133 87.2
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 4.5e-60 234.6 133 86.5
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 5.9e-60 234.2 133 85.7
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.3e-59 233.0 129 86.8
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.3e-59 233.0 129 86.8
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.3e-59 233.0 129 86.8
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 2.9e-59 231.9 129 86.0
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 2.9e-59 231.9 129 88.4
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 8.5e-59 230.3 132 84.1
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 8.5e-59 230.3 132 84.1
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 8.5e-59 230.3 133 85.0
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 8.5e-59 230.3 133 85.7
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 8.5e-59 230.3 133 85.0
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 1.1e-58 229.9 133 85.0
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.5e-58 229.6 131 85.5
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 1.5e-58 229.6 126 87.3
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.9e-58 229.2 132 83.3
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.9e-58 229.2 132 83.3
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.9e-58 229.2 132 83.3
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 3.2e-58 228.4 129 86.8
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 3.2e-58 228.4 134 83.6
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 5.5e-58 227.6 129 86.8
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 9.4e-58 226.9 132 82.6
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.2e-57 226.5 129 87.6
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 6.1e-57 224.2 129 85.3
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 6.1e-57 224.2 128 82.8
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 8.0e-57 223.8 125 86.4
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.0e-55 219.2 129 82.9
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.4e-55 218.4 132 79.5
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 7.5e-55 217.2 165 69.7
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 2.2e-54 215.7 165 69.1
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 2.8e-54 215.3 133 79.7
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 8.3e-54 213.8 184 62.5
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.4e-53 212.2 134 83.6
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.5e-52 208.4 129 77.5
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.1e-50 203.4 124 80.6
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.5e-50 203.0 129 74.4
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 2.5e-50 202.2 132 80.3
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 1.2e-49 199.9 196 56.1
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.6e-49 199.5 133 70.7
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 3.6e-49 198.4 130 79.2
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.2e-46 189.1 131 64.9
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 2.8e-46 188.7 123 70.7
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 4.9e-46 188.0 102 86.3
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 5.4e-45 184.5 133 62.4
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 1.6e-44 183.0 127 74.0
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.0e-43 180.3 132 65.9
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 8.6e-43 177.2 132 63.6
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 8.0e-41 170.6 119 68.9
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.8e-40 169.5 137 68.6
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 3.7e-38 161.8 79 94.9
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 6.4e-38 161.0 89 89.9
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-37 159.8 93 82.8
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.8e-37 159.5 86 90.7
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 5.9e-36 154.5 85 88.2
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.9e-35 152.1 80 86.2
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 2.9e-35 152.1 138 62.3
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 3.9e-35 151.8 86 86.0
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 3.3e-34 148.7 86 83.7
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.3e-34 147.5 80 85.0
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.0e-32 143.7 88 79.5
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 1.4e-32 143.3 87 80.5
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.3e-32 142.5 86 81.4
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 3.1e-32 142.1 87 79.3
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 3.1e-32 142.1 87 79.3
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 2.6e-31 139.0 71 88.7
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.4e-31 138.7 75 85.3
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 9.8e-31 137.1 101 73.3
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-29 133.3 89 77.5
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.9e-29 132.9 81 82.7
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.4e-29 132.5 68 88.2
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 6.2e-25 117.9 65 80.0
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 6.4e-22 107.8 88 61.4
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 7.8e-20 100.9 87 62.1
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.5e-18 94.0 78 57.7
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 4.7e-17 91.7 46 87.0
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 1.8e-16 89.7 45 86.7
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 9.9e-15 84.0 56 78.6
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 3.3e-10 68.9 41 75.6
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 3.6e-09 65.5 42 78.6
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.0e-08 62.0 47 66.0


User provided reference genes

Program Settings