Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0341611 Rosa chinensis HOM05D003441 ORTHO05D004516 4.4e-65 251.1 126 100.0
FAN03G2549 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.9e-50 200.3 126 81.7
RcHm_v2.0_Chr1g0341861 Rosa chinensis HOM05D003441 ORTHO05D004516 8.9e-50 200.3 129 80.6
GSVIVG01019392001 Vitis vinifera HOM05D003441 ORTHO05D004516 6.0e-46 187.6 127 74.0
FvH4_7g07850 Fragaria vesca HOM05D003441 ORTHO05D004516 7.8e-46 187.2 115 82.6
FAN13G0786 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.0e-45 185.3 123 74.8
RcHm_v2.0_Chr7g0197061 Rosa chinensis HOM05D003441 ORTHO05D004516 3.9e-45 184.9 123 74.0
FvH4_5g02840 Fragaria vesca HOM05D003441 ORTHO05D004516 8.6e-45 183.7 123 74.0
FAN04G2979 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.6e-45 183.7 123 74.0
FAN08G0848 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.6e-45 183.7 123 74.0
Thecc.03G282800 Theobroma cacao HOM05D003441 ORTHO05D004516 1.9e-44 182.6 127 72.4
Prupe.5G104000 Prunus persica HOM05D003441 ORTHO05D004516 4.3e-44 181.4 126 72.2
Manes.02G021700 Manihot esculenta HOM05D003441 ORTHO05D004516 5.6e-44 181.0 126 71.4
MBI04_g41820_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 7.3e-44 180.6 127 71.7
MD06G1087900 Malus domestica HOM05D003441 ORTHO05D004516 7.3e-44 180.6 123 71.5
FAN06G0185 Fragaria x ananassa HOM05D003441 ORTHO05D004516 9.5e-44 180.3 131 74.0
SalBow1G4213 Salvia bowleyana HOM05D003441 ORTHO05D004516 9.5e-44 180.3 126 73.8
Glyma.05G209700 Glycine max HOM05D003441 ORTHO05D004516 1.6e-43 179.5 125 73.6
Sabra01G0076300 Salix brachista HOM05D003441 ORTHO05D004516 1.6e-43 179.5 123 74.8
TWI15G1061 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 1.6e-43 179.5 123 74.0
TWI15G1203 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 1.6e-43 179.5 123 73.2
Atru.chr9.2153 Acer truncatum HOM05D003441 ORTHO05D004516 2.1e-43 179.1 128 74.2
Glyma.08G016400 Glycine max HOM05D003441 ORTHO05D004516 3.6e-43 178.3 125 73.6
Gorai.003G156900 Gossypium raimondii HOM05D003441 ORTHO05D004516 6.2e-43 177.6 127 72.4
CSS0029160 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 8.1e-43 177.2 126 72.2
CSS0043381 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 8.1e-43 177.2 126 72.2
MELO3C005694.2 Cucumis melo HOM05D003441 ORTHO05D004516 1.4e-42 176.4 123 71.5
Potri.001G101300 Populus trichocarpa HOM05D003441 ORTHO05D004516 1.8e-42 176.0 126 73.8
Gohir.A03G019400 Gossypium hirsutum HOM05D003441 ORTHO05D004516 2.3e-42 175.6 127 71.7
Duzib205G0291 Durio zibethinus HOM05D003441 ORTHO05D004516 4.0e-42 174.9 127 72.4
Cfa012202 Carpinus fangiana HOM05D003441 ORTHO05D004516 5.2e-42 174.5 123 72.4
Cc08_g15010 Coffea canephora HOM05D003441 ORTHO05D004516 5.2e-42 174.5 126 72.2
Dinv37619 Davidia involucrata HOM05D003441 ORTHO05D004516 5.2e-42 174.5 124 73.4
Gohir.A11G022800 Gossypium hirsutum HOM05D003441 ORTHO05D004516 5.2e-42 174.5 127 70.9
Gohir.D03G149600 Gossypium hirsutum HOM05D003441 ORTHO05D004516 5.2e-42 174.5 127 71.7
Actinidia28364 Actinidia chinensis HOM05D003441 ORTHO05D004516 6.8e-42 174.1 123 73.2
Cpa.g.sc180.13 Carica papaya HOM05D003441 ORTHO05D004516 6.8e-42 174.1 126 70.6
Migut.E01191 Erythranthe guttata HOM05D003441 ORTHO05D004516 6.8e-42 174.1 126 71.4
CsaV3_5G002620 Cucumis sativus L. HOM05D003441 ORTHO05D004516 8.9e-42 173.7 123 70.7
TAR636G0201 Trochodendron aralioides HOM05D003441 ORTHO05D004516 8.9e-42 173.7 128 71.1
CiPaw.12G091100 Carya illinoinensis HOM05D003441 ORTHO05D004516 1.2e-41 173.3 123 70.7
COL.COLO4_34498 Corchorus olitorius HOM05D003441 ORTHO05D004516 1.2e-41 173.3 126 73.0
Gohir.D11G022366 Gossypium hirsutum HOM05D003441 ORTHO05D004516 1.2e-41 173.3 127 70.1
Gorai.007G023800 Gossypium raimondii HOM05D003441 ORTHO05D004516 1.2e-41 173.3 127 70.1
unitig_62.g23537 Utricularia gibba HOM05D003441 ORTHO05D004516 1.2e-41 173.3 126 71.4
CANSAT25G0732 Cannabis sativa HOM05D003441 ORTHO05D004516 1.5e-41 172.9 124 71.8
Ciclev10019088m.g Citrus clementina HOM05D003441 ORTHO05D004516 1.5e-41 172.9 126 72.2
Lj2C182G1 Lonicera japonica HOM05D003441 ORTHO05D004516 1.5e-41 172.9 123 70.7
QL12p032410 Quercus lobata HOM05D003441 ORTHO05D004516 1.5e-41 172.9 123 72.4
Lalb_Chr05g0224631 Lupinus albus HOM05D003441 ORTHO05D004516 2.0e-41 172.6 125 71.2
Nitab4.5_0001522g0040 Nicotiana tabacum HOM05D003441 ORTHO05D004516 2.0e-41 172.6 126 71.4
Nitab4.5_0004114g0020 Nicotiana tabacum HOM05D003441 ORTHO05D004516 2.0e-41 172.6 126 71.4
TWI81G0502 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 2.0e-41 172.6 124 71.8
PGR042G0359 Punica granatum HOM05D003441 ORTHO05D004516 3.4e-41 171.8 126 71.4
Sed0019074 Sechium edule HOM05D003441 ORTHO05D004516 3.4e-41 171.8 124 71.0
arahy.Tifrunner.gnm1.ann1.5RI6ER Arachis hypogaea HOM05D003441 ORTHO05D004516 4.4e-41 171.4 126 70.6
arahy.Tifrunner.gnm1.ann1.75Q964 Arachis hypogaea HOM05D003441 ORTHO05D004516 4.4e-41 171.4 126 70.6
HPP92_021979 Vanilla planifolia HOM05D003441 ORTHO05D004516 4.4e-41 171.4 127 70.1
CAN.G532.8 Capsicum annuum HOM05D003441 ORTHO05D004516 5.8e-41 171.0 126 70.6
Eucgr.E00638 Eucalyptus grandis HOM05D003441 ORTHO05D004516 9.8e-41 170.2 123 71.5
Lalb_Chr16g0390181 Lupinus albus HOM05D003441 ORTHO05D004516 9.8e-41 170.2 125 69.6
Peaxi162Scf00074g02032 Petunia axillaris HOM05D003441 ORTHO05D004516 9.8e-41 170.2 123 72.4
CDE12G0607 Ceratophyllum demersum HOM05D003441 ORTHO05D004516 2.9e-40 168.7 127 68.5
Solyc08g081340.4 Solanum lycopersicum HOM05D003441 ORTHO05D004516 2.9e-40 168.7 126 69.0
Sopen08g029660 Solanum pennellii HOM05D003441 ORTHO05D004516 2.9e-40 168.7 126 69.0
MSTRG.11971 Avicennia marina HOM05D003441 ORTHO05D004516 3.7e-40 168.3 126 69.8
Medtr8g098675 Medicago truncatula HOM05D003441 ORTHO05D004516 1.1e-39 166.8 125 67.2
VMungo0251G2080 Vigna mungo HOM05D003441 ORTHO05D004516 1.4e-39 166.4 125 68.8
TPR.G12826 Trifolium pratense HOM05D003441 ORTHO05D004516 4.1e-39 164.9 125 68.0
Lj4g0015025 Lotus japonicus HOM05D003441 ORTHO05D004516 5.4e-39 164.5 125 68.8
THA.LOC104817891 Tarenaya hassleriana HOM05D003441 ORTHO05D004516 5.4e-39 164.5 123 65.9
Ah.12g058870 Amaranthus hybridus HOM05D003441 ORTHO05D004516 9.2e-39 163.7 123 65.9
AT5G41370 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.6e-38 162.9 123 67.5
AUR62010445 Chenopodium quinoa HOM05D003441 ORTHO05D004516 1.6e-38 162.9 123 65.9
AUR62030470 Chenopodium quinoa HOM05D003441 ORTHO05D004516 2.1e-38 162.5 123 65.9
Psat7g031680 Pisum sativum HOM05D003441 ORTHO05D004516 2.1e-38 162.5 125 66.4
ATR0661G194 Amborella trichopoda HOM05D003441 ORTHO05D004516 2.7e-38 162.2 133 66.9
Rhsim02G0234100 Rhododendron simsii HOM05D003441 ORTHO05D004516 2.7e-38 162.2 123 65.9
FAN01G0379 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.5e-38 161.8 111 75.7
Aqoxy1G00680 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 4.6e-38 161.4 127 66.1
AL7G48050 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 4.6e-38 161.4 123 66.7
HPP92_022012 Vanilla planifolia HOM05D003441 ORTHO05D004516 4.6e-38 161.4 119 69.7
Aa31LG5G13590 Aethionema arabicum HOM05D003441 ORTHO05D004516 6.0e-38 161.0 123 65.0
ECA246G2088 Erigeron canadensis HOM05D003441 ORTHO05D004516 6.0e-38 161.0 125 67.2
Ca_10937_v3 Cicer arietinum L. HOM05D003441 ORTHO05D004516 7.8e-38 160.6 125 64.8
Phvul.002G291500 Phaseolus vulgaris HOM05D003441 ORTHO05D004516 1.0e-37 160.2 125 66.4
Oeu030097.4 Olea europaea HOM05D003441 ORTHO05D004516 8.6e-37 157.1 123 67.5
AL7G48070 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 1.1e-36 156.8 125 64.8
Thhalv10027651m.g Eutrema salsugineum HOM05D003441 ORTHO05D004516 2.5e-36 155.6 123 65.0
Lsat_1_v5_gn_3_6121 Lactuca sativa HOM05D003441 ORTHO05D004516 2.5e-36 155.6 126 67.5
BcaB02g07896 Brassica carinata HOM05D003441 ORTHO05D004516 5.6e-36 154.5 123 65.0
Carub.0007s3412 Capsella rubella HOM05D003441 ORTHO05D004516 5.6e-36 154.5 123 64.2
PSO478G5020 Papaver somniferum HOM05D003441 ORTHO05D004516 5.6e-36 154.5 126 64.3
AagrBONN_evm.TU.Sc2ySwM_368.2338 Anthoceros agrestis HOM05D003441 ORTHO05D004516 9.5e-36 153.7 126 63.5
HanXRQChr06g0165951 Helianthus annuus HOM05D003441 ORTHO05D004516 9.5e-36 153.7 125 66.4
Nitab4.5_0002290g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 9.5e-36 153.7 125 64.8
HanXRQChr17g0533461 Helianthus annuus HOM05D003441 ORTHO05D004516 1.2e-35 153.3 126 66.7
Haze_08814 Corylus avellana HOM05D003441 ORTHO05D004516 3.6e-35 151.8 95 78.9
Nitab4.5_0001220g0100 Nicotiana tabacum HOM05D003441 ORTHO05D004516 8.1e-35 150.6 116 68.1
BolC6t37164H Brassica oleracea HOM05D003441 ORTHO05D004516 1.1e-34 150.2 123 63.4
Nitab4.5_0004008g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.4e-34 149.8 130 61.5
A07p20760 Brassica napus HOM05D003441 ORTHO05D004516 2.3e-34 149.1 123 63.4
BraA07t29768Z Brassica rapa HOM05D003441 ORTHO05D004516 2.3e-34 149.1 123 63.4
A04p14500 Brassica napus HOM05D003441 ORTHO05D004516 6.8e-34 147.5 123 61.8
C04p48400 Brassica napus HOM05D003441 ORTHO05D004516 6.8e-34 147.5 123 61.8
BolC4t26434H Brassica oleracea HOM05D003441 ORTHO05D004516 6.8e-34 147.5 123 61.8
BraA04t17095Z Brassica rapa HOM05D003441 ORTHO05D004516 6.8e-34 147.5 123 61.8
BcaC08g44524 Brassica carinata HOM05D003441 ORTHO05D004516 8.9e-34 147.1 123 61.8
C06p19750 Brassica napus HOM05D003441 ORTHO05D004516 8.9e-34 147.1 123 61.8
BcaC02g08964 Brassica carinata HOM05D003441 ORTHO05D004516 1.2e-33 146.7 123 61.0
Duzib084G0223 Durio zibethinus HOM05D003441 ORTHO05D004516 1.5e-33 146.4 94 76.6
Sp7g00580 Schrenkiella parvula HOM05D003441 ORTHO05D004516 1.5e-33 146.4 123 62.6
SpUn0010_0060 Schrenkiella parvula HOM05D003441 ORTHO05D004516 1.5e-33 146.4 123 62.6
PGSC0003DMG400012332 Solanum tuberosum HOM05D003441 ORTHO05D004516 1.5e-33 146.4 94 76.6
BcaB06g27616 Brassica carinata HOM05D003441 ORTHO05D004516 2.0e-33 146.0 123 61.8
Hund10975 Selenicereus undatus HOM05D003441 ORTHO05D004516 5.8e-33 144.4 94 74.5
AT5G41360 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 7.6e-33 144.1 123 61.0
ClCG01G002520 Citrullus lanatus HOM05D003441 ORTHO05D004516 7.6e-33 144.1 123 62.6
SMO115G0252 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 7.6e-33 144.1 123 61.8
Aqoxy5G02024 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 4.9e-32 141.4 127 60.6
FAN10G3500 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.4e-32 140.6 118 66.1
SGA_v2.0_scaffold144G35916 Striga asiatica HOM05D003441 ORTHO05D004516 1.4e-31 139.8 127 60.6
PSO017G3334 Papaver somniferum HOM05D003441 ORTHO05D004516 1.9e-31 139.4 126 57.9
PSO421G0274 Papaver somniferum HOM05D003441 ORTHO05D004516 1.9e-31 139.4 126 57.9
AUR62022736 Chenopodium quinoa HOM05D003441 ORTHO05D004516 2.4e-31 139.0 116 63.8
FAN06G2516 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.2e-31 138.7 84 84.5
Lj8A218G25 Lonicera japonica HOM05D003441 ORTHO05D004516 9.2e-31 137.1 94 70.2
DCAR_005566 Daucus carota HOM05D003441 ORTHO05D004516 1.2e-30 136.7 94 69.1
SMO347G0324 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 6.0e-30 134.4 123 56.1
PGSC0003DMG400026783 Solanum tuberosum HOM05D003441 ORTHO05D004516 1.3e-29 133.3 129 56.6
ECA246G1863 Erigeron canadensis HOM05D003441 ORTHO05D004516 6.6e-29 131.0 124 59.7
Mapoly0037s0100 Marchantia polymorpha HOM05D003441 ORTHO05D004516 1.9e-28 129.4 124 58.1
SEGI_12688 Sequoiadendron giganteum HOM05D003441 ORTHO05D000001 1.9e-28 129.4 109 64.2
Pp3c6_13890 Physcomitrium patens HOM05D003441 ORTHO05D004516 4.7e-27 124.8 124 55.6
Carub.0007s3411 Capsella rubella HOM05D003441 ORTHO05D004516 1.1e-26 123.6 123 54.5
EL10Ac5g12531 Beta vulgaris HOM05D003441 ORTHO05D004516 1.4e-26 123.2 123 54.5
Nn6g33339 Nelumbo nucifera HOM05D003441 ORTHO05D004516 1.8e-26 122.9 127 56.7
SHI07184 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-25 120.2 97 66.0
CARHR212960 Cardamine hirsuta HOM05D003441 ORTHO05D004516 1.3e-24 116.7 123 52.0
CBR_g34305 Chara braunii HOM05D003441 ORTHO05D004516 2.2e-24 115.9 129 53.5
FvH4_7g08220 Fragaria vesca HOM05D003441 ORTHO05D004516 2.2e-16 89.4 48 89.6
CARHR183180 Cardamine hirsuta HOM05D003441 ORTHO05D004516 2.4e-15 85.9 54 72.2
PRCOL_00001151 Prasinoderma coloniale HOM05D003441 ORTHO05D004516 3.9e-13 78.6 137 41.6
AUR62004519 Chenopodium quinoa HOM05D003441 ORTHO05D004516 6.6e-13 77.8 149 38.3
Cre06.g297016 Chlamydomonas reinhardtii HOM05D003441 ORTHO05D004516 1.1e-12 77.0 101 46.5
Zm00001eb156220 Zea mays HOM05D003441 ORTHO05D004516 2.1e-11 72.8 46 73.9
Cfa023957 Carpinus fangiana HOM05D003441 ORTHO05D004516 7.6e-09 64.3 123 35.0
MCO01G486 Micromonas commoda HOM05D003441 ORTHO05D004516 1.3e-08 63.5 99 40.4
CDE04G1391 Ceratophyllum demersum HOM05D003441 ORTHO05D129623 1.7e-08 63.2 61 52.5
FvH4_5g19420 Fragaria vesca HOM05D003441 ORTHO05D004516 2.9e-08 62.4 62 59.7
FAN18G4545 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.4e-08 60.8 62 58.1
RcHm_v2.0_Chr7g0203931 Rosa chinensis HOM05D003441 ORTHO05D004516 1.4e-07 60.1 64 54.7
FAN13G0171 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.2e-07 58.9 56 60.7
FAN04G2533 Fragaria x ananassa HOM05D003441 ORTHO05D004516 7.1e-07 57.8 62 54.8


User provided reference genes

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