Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0339171 Rosa chinensis HOM05D005157 ORTHO05D006652 7.9e-76 287.0 138 100.0
RcHm_v2.0_Chr1g0339271 Rosa chinensis HOM05D005157 ORTHO05D006652 2.7e-31 139.0 75 90.7
RcHm_v2.0_Chr5g0058571 Rosa chinensis HOM05D005157 ORTHO05D006652 4.5e-31 138.3 75 89.3
FAN21G2652 Fragaria x ananassa HOM05D005157 ORTHO05D006652 1.0e-30 137.1 75 88.0
FAN16G1661 Fragaria x ananassa HOM05D005157 ORTHO05D006652 2.3e-30 136.0 75 86.7
FvH4_3g31780 Fragaria vesca HOM05D005157 ORTHO05D006652 8.6e-30 134.0 75 85.3
FAN11G1125 Fragaria x ananassa HOM05D005157 ORTHO05D006652 8.6e-30 134.0 75 85.3
FAN25G2587 Fragaria x ananassa HOM05D005157 ORTHO05D006652 2.5e-29 132.5 74 86.5
Prupe.6G104200 Prunus persica HOM05D005157 ORTHO05D006652 5.5e-29 131.3 75 82.7
MD03G1120700 Malus domestica HOM05D005157 ORTHO05D006652 1.2e-28 130.2 74 83.8
MD11G1139300 Malus domestica HOM05D005157 ORTHO05D006652 2.8e-28 129.0 74 81.1
CiPaw.14G084700 Carya illinoinensis HOM05D005157 ORTHO05D006652 2.6e-26 122.5 75 76.0
Cfa011300 Carpinus fangiana HOM05D005157 ORTHO05D006652 4.4e-26 121.7 75 77.3
Haze_23783 Corylus avellana HOM05D005157 ORTHO05D006652 7.5e-26 120.9 107 58.9
Lalb_Chr01g0004391 Lupinus albus HOM05D005157 ORTHO05D006652 2.2e-25 119.4 75 74.7
Lalb_Chr03g0027481 Lupinus albus HOM05D005157 ORTHO05D006652 2.2e-25 119.4 75 74.7
Glyma.12G076900 Glycine max HOM05D005157 ORTHO05D006652 8.3e-25 117.5 75 76.0
Prupe.6G104100 Prunus persica HOM05D005157 ORTHO05D006652 1.1e-24 117.1 82 68.3
Cpa.g.sc65.7 Carica papaya HOM05D005157 ORTHO05D006652 1.4e-24 116.7 71 76.1
Duzib168G1383 Durio zibethinus HOM05D005157 ORTHO05D006652 1.4e-24 116.7 75 74.7
arahy.Tifrunner.gnm1.ann1.7C35UG Arachis hypogaea HOM05D005157 ORTHO05D006652 1.8e-24 116.3 75 73.3
Thecc.09G343300 Theobroma cacao HOM05D005157 ORTHO05D006652 3.2e-24 115.5 75 73.3
Gohir.D05G104400 Gossypium hirsutum HOM05D005157 ORTHO05D006652 4.1e-24 115.2 75 74.7
Gorai.009G108600 Gossypium raimondii HOM05D005157 ORTHO05D006652 4.1e-24 115.2 75 74.7
CANSAT78G0434 Cannabis sativa HOM05D005157 ORTHO05D006652 7.0e-24 114.4 75 73.3
Gohir.A05G104600 Gossypium hirsutum HOM05D005157 ORTHO05D006652 7.0e-24 114.4 75 74.7
Phvul.011G080900 Phaseolus vulgaris HOM05D005157 ORTHO05D006652 7.0e-24 114.4 75 72.0
arahy.Tifrunner.gnm1.ann1.SE8XGI Arachis hypogaea HOM05D005157 ORTHO05D006652 9.2e-24 114.0 75 72.0
arahy.Tifrunner.gnm1.ann1.T9YDZ2 Arachis hypogaea HOM05D005157 ORTHO05D006652 9.2e-24 114.0 75 72.0
Ciclev10029091m.g Citrus clementina HOM05D005157 ORTHO05D006652 9.2e-24 114.0 75 73.3
COL.COLO4_18312 Corchorus olitorius HOM05D005157 ORTHO05D006652 9.2e-24 114.0 75 72.0
MELO3C025782.2 Cucumis melo HOM05D005157 ORTHO05D006652 9.2e-24 114.0 74 68.9
Medtr4g058720 Medicago truncatula HOM05D005157 ORTHO05D006652 9.2e-24 114.0 74 70.3
ClCG02G021260 Citrullus lanatus HOM05D005157 ORTHO05D006652 1.2e-23 113.6 74 68.9
VMungo1127G1275 Vigna mungo HOM05D005157 ORTHO05D006652 1.2e-23 113.6 75 72.0
Manes.04G018600 Manihot esculenta HOM05D005157 ORTHO05D006652 2.0e-23 112.8 75 70.7
TWI79G1101 Tripterygium wilfordii HOM05D005157 ORTHO05D006652 2.0e-23 112.8 75 72.0
Eucgr.J00908 Eucalyptus grandis HOM05D005157 ORTHO05D006652 2.7e-23 112.5 74 70.3
Lj3g0007277 Lotus japonicus HOM05D005157 ORTHO05D006652 2.7e-23 112.5 71 70.4
Ca_19285_v3 Cicer arietinum L. HOM05D005157 ORTHO05D006652 4.6e-23 111.7 74 67.6
Glyma.11G145000 Glycine max HOM05D005157 ORTHO05D006652 4.6e-23 111.7 75 72.0
Nn2g10829 Nelumbo nucifera HOM05D005157 ORTHO05D006652 4.6e-23 111.7 75 69.3
MSTRG.18672 Avicennia marina HOM05D005157 ORTHO05D006652 5.9e-23 111.3 75 70.7
Dinv32724 Davidia involucrata HOM05D005157 ORTHO05D006652 5.9e-23 111.3 75 70.7
Psat7g192080 Pisum sativum HOM05D005157 ORTHO05D006652 7.8e-23 110.9 74 68.9
Rhsim13G0095800 Rhododendron simsii HOM05D005157 ORTHO05D006652 7.8e-23 110.9 76 68.4
THA.LOC104826376 Tarenaya hassleriana HOM05D005157 ORTHO05D006652 7.8e-23 110.9 75 70.7
Actinidia07149 Actinidia chinensis HOM05D005157 ORTHO05D006652 1.3e-22 110.2 75 69.3
CsaV3_6G014010 Cucumis sativus L. HOM05D005157 ORTHO05D006652 1.3e-22 110.2 74 68.9
PGR119G0190 Punica granatum HOM05D005157 ORTHO05D006652 1.3e-22 110.2 75 70.7
Potri.004G212500 Populus trichocarpa HOM05D005157 ORTHO05D006652 1.7e-22 109.8 75 66.7
Sabra09G0006500 Salix brachista HOM05D005157 ORTHO05D006652 1.7e-22 109.8 75 66.7
CSS0048550 Camellia sinensis var. sinensis HOM05D005157 ORTHO05D006652 2.3e-22 109.4 75 68.0
Potri.009G010600 Populus trichocarpa HOM05D005157 ORTHO05D006652 2.3e-22 109.4 71 70.4
TWI31G1055 Tripterygium wilfordii HOM05D005157 ORTHO05D006652 3.9e-22 108.6 75 69.3
GSVIVG01025209001 Vitis vinifera HOM05D005157 ORTHO05D006652 3.9e-22 108.6 75 68.0
Migut.D02241 Erythranthe guttata HOM05D005157 ORTHO05D006652 5.0e-22 108.2 75 66.7
TPR.G6155 Trifolium pratense HOM05D005157 ORTHO05D006652 1.1e-21 107.1 70 70.0
Aqoxy5G02347 Aquilegia oxysepala HOM05D005157 ORTHO05D006652 1.5e-21 106.7 75 69.3
arahy.Tifrunner.gnm1.ann1.PZ74PR Arachis hypogaea HOM05D005157 ORTHO05D006652 1.5e-21 106.7 72 69.4
Hund01506 Selenicereus undatus HOM05D005157 ORTHO05D006652 1.9e-21 106.3 73 68.5
AT4G27490 Arabidopsis thaliana HOM05D005157 ORTHO05D006652 2.5e-21 105.9 75 64.0
Thhalv10026036m.g Eutrema salsugineum HOM05D005157 ORTHO05D006652 4.3e-21 105.1 75 64.0
Lsat_1_v5_gn_2_98721 Lactuca sativa HOM05D005157 ORTHO05D006652 4.3e-21 105.1 75 65.3
Sp7g25430 Schrenkiella parvula HOM05D005157 ORTHO05D006652 4.3e-21 105.1 75 64.0
ECA238G0155 Erigeron canadensis HOM05D005157 ORTHO05D006652 5.6e-21 104.8 70 68.6
Peaxi162Scf00858g00217 Petunia axillaris HOM05D005157 ORTHO05D006652 5.6e-21 104.8 75 65.3
SalBow3G0979 Salvia bowleyana HOM05D005157 ORTHO05D006652 5.6e-21 104.8 75 66.7
Carub.0007s1336 Capsella rubella HOM05D005157 ORTHO05D006652 7.3e-21 104.4 75 62.7
AUR62026913 Chenopodium quinoa HOM05D005157 ORTHO05D006652 7.3e-21 104.4 75 68.0
SGA_v2.0_scaffold180G39644 Striga asiatica HOM05D005157 ORTHO05D006652 7.3e-21 104.4 75 65.3
CARHR235170 Cardamine hirsuta HOM05D005157 ORTHO05D006652 1.2e-20 103.6 75 62.7
AUR62039868 Chenopodium quinoa HOM05D005157 ORTHO05D006652 1.6e-20 103.2 75 66.7
TPR.G10725 Trifolium pratense HOM05D005157 ORTHO05D006652 1.6e-20 103.2 70 68.6
Nitab4.5_0003747g0010 Nicotiana tabacum HOM05D005157 ORTHO05D006652 2.1e-20 102.8 75 64.0
AL7G25280 Arabidopsis lyrata HOM05D005157 ORTHO05D006652 2.8e-20 102.4 75 64.0
Cc01_g10930 Coffea canephora HOM05D005157 ORTHO05D006652 3.6e-20 102.1 75 64.0
EL10Ac7g16615 Beta vulgaris HOM05D005157 ORTHO05D006652 4.7e-20 101.7 81 63.0
A01p18680 Brassica napus HOM05D005157 ORTHO05D006652 4.7e-20 101.7 75 62.7
PGSC0003DMG400020831 Solanum tuberosum HOM05D005157 ORTHO05D006652 4.7e-20 101.7 75 64.0
Atru.chr3.3604 Acer truncatum HOM05D005157 ORTHO05D006652 8.0e-20 100.9 70 68.6
C01p23670 Brassica napus HOM05D005157 ORTHO05D006652 1.0e-19 100.5 75 61.3
BolC1t02314H Brassica oleracea HOM05D005157 ORTHO05D006652 1.0e-19 100.5 75 61.3
BraA01t01817Z Brassica rapa HOM05D005157 ORTHO05D006652 1.0e-19 100.5 75 61.3
HanXRQChr14g0452641 Helianthus annuus HOM05D005157 ORTHO05D006652 2.3e-19 99.4 75 62.7
DCAR_003448 Daucus carota HOM05D000076 ORTHO05D003143 3.1e-19 99.0 75 61.3
Solyc06g005860.3 Solanum lycopersicum HOM05D005157 ORTHO05D006652 3.1e-19 99.0 66 68.2
Sopen06g001830 Solanum pennellii HOM05D005157 ORTHO05D006652 3.1e-19 99.0 66 68.2
Aa31LG5G10030 Aethionema arabicum HOM05D005157 ORTHO05D006652 4.0e-19 98.6 68 66.2
CAN.G59.23 Capsicum annuum HOM05D005157 ORTHO05D006652 4.0e-19 98.6 75 61.3
vmacro03211 Vaccinium macrocarpon HOM05D005157 ORTHO05D006652 8.9e-19 97.4 66 68.2
ATR0048G044 Amborella trichopoda HOM05D005157 ORTHO05D006652 2.0e-18 96.3 73 63.0
arahy.Tifrunner.gnm1.ann1.6WIU20 Arachis hypogaea HOM05D005157 ORTHO05D006652 2.2e-17 92.8 62 67.7
CAN.G483.9 Capsicum annuum HOM05D005157 ORTHO05D006652 2.9e-17 92.4 75 57.3
HPP92_016484 Vanilla planifolia HOM05D005157 ORTHO05D006652 3.7e-17 92.0 66 65.2
RcHm_v2.0_Chr2g0168941 Rosa chinensis HOM05D005157 ORTHO05D006652 4.9e-17 91.7 52 86.5
unitig_747.g21986 Utricularia gibba HOM05D005157 ORTHO05D006652 4.9e-17 91.7 75 52.0
CDE03G0292 Ceratophyllum demersum HOM05D005157 ORTHO05D006652 6.4e-17 91.3 66 60.6
SHI32600 Sapria himalayana HOM05D005157 ORTHO05D006652 2.4e-16 89.4 72 62.5
CAN.G741.13 Capsicum annuum HOM05D005157 ORTHO05D006652 1.6e-15 86.7 62 61.3
PSO339G6554 Papaver somniferum HOM05D005157 ORTHO05D006652 3.5e-15 85.5 65 61.5
PSO801G0513 Papaver somniferum HOM05D005157 ORTHO05D006652 3.5e-15 85.5 65 61.5
RcHm_v2.0_Chr1g0317781 Rosa chinensis HOM05D005157 ORTHO05D006652 3.5e-15 85.5 43 93.0
Os03g0844450 Oryza sativa ssp. japonica HOM05D005157 ORTHO05D006652 1.3e-14 83.6 73 50.7
Os08g0116800 Oryza sativa ssp. japonica HOM05D005157 ORTHO05D006652 3.9e-14 82.0 73 49.3
Duzib170G0112 Durio zibethinus HOM05D005157 ORTHO05D006652 4.3e-13 78.6 56 66.1
SMO358G0168 Selaginella moellendorffii HOM05D005157 ORTHO05D006652 1.2e-12 77.0 67 49.3
Zm00001eb328370 Zea mays HOM05D005157 ORTHO05D006652 1.6e-12 76.6 66 48.5
Ah.08g211710 Amaranthus hybridus HOM05D005157 ORTHO05D006652 4.7e-12 75.1 135 37.0
Mapoly0055s0093 Marchantia polymorpha HOM05D005157 ORTHO05D006652 1.1e-11 73.9 66 48.5
Sc20g0002840 Simmondsia chinensis HOM05D005157 ORTHO05D006652 1.2e-10 70.5 45 73.3
Pp3c3_18310 Physcomitrium patens HOM05D005157 ORTHO05D006652 5.8e-10 68.2 73 42.5
C07p55510 Brassica napus HOM05D005157 ORTHO05D006652 1.3e-09 67.0 46 65.2
BolC7t46030H Brassica oleracea HOM05D005157 ORTHO05D006652 1.3e-09 67.0 46 65.2
BcaC06g32687 Brassica carinata HOM05D005157 ORTHO05D006652 3.7e-09 65.5 75 48.0
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 4.9e-09 65.1 68 41.2
HPP92_016497 Vanilla planifolia HOM05D005157 ORTHO05D006652 1.1e-08 63.9 45 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2949 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.9e-08 63.2 114 30.7
Actinidia24113 Actinidia chinensis HOM05D005157 ORTHO05D006652 2.4e-08 62.8 42 66.7
Sabra04G0143600 Salix brachista HOM05D005157 ORTHO05D006652 1.6e-07 60.1 47 59.6
CBR_g26279 Chara braunii HOM05D005157 ORTHO05D006652 3.5e-07 58.9 74 39.2
PSO339G2625 Papaver somniferum HOM05D005157 ORTHO05D006652 4.6e-07 58.5 44 63.6
A03p57310 Brassica napus HOM05D005157 ORTHO05D006652 3.0e-06 55.8 45 57.8
BraA03t14797Z Brassica rapa HOM05D005157 ORTHO05D006652 3.0e-06 55.8 45 57.8


User provided reference genes

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