Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0339161 Rosa chinensis HOM05D005157 ORTHO05D006652 7.6e-29 129.8 65 100.0
FvH4_3g31780 Fragaria vesca HOM05D005157 ORTHO05D006652 6.3e-15 83.6 56 80.4
FAN11G1125 Fragaria x ananassa HOM05D005157 ORTHO05D006652 6.3e-15 83.6 50 86.0
RcHm_v2.0_Chr1g0339271 Rosa chinensis HOM05D005157 ORTHO05D006652 6.3e-15 83.6 56 80.4
Prupe.6G104100 Prunus persica HOM05D005157 ORTHO05D006652 8.2e-15 83.2 49 87.8
Prupe.6G104200 Prunus persica HOM05D005157 ORTHO05D006652 8.2e-15 83.2 49 87.8
RcHm_v2.0_Chr5g0058571 Rosa chinensis HOM05D005157 ORTHO05D006652 8.2e-15 83.2 49 87.8
TAR369G0123 Trochodendron aralioides HOM05D005157 ORTHO05D006652 8.2e-15 83.2 49 87.8
RcHm_v2.0_Chr1g0339211 Rosa chinensis HOM05D005157 ORTHO05D006652 1.1e-14 82.8 41 97.6
Ciclev10029091m.g Citrus clementina HOM05D005157 ORTHO05D006652 1.8e-14 82.0 49 85.7
Gohir.A05G104600 Gossypium hirsutum HOM05D005157 ORTHO05D006652 1.8e-14 82.0 49 85.7
Gohir.D05G104400 Gossypium hirsutum HOM05D005157 ORTHO05D006652 1.8e-14 82.0 49 85.7
Gorai.009G108600 Gossypium raimondii HOM05D005157 ORTHO05D006652 1.8e-14 82.0 49 85.7
Manes.04G018600 Manihot esculenta HOM05D005157 ORTHO05D006652 1.8e-14 82.0 49 85.7
Thecc.09G343300 Theobroma cacao HOM05D005157 ORTHO05D006652 1.8e-14 82.0 49 85.7
Cfa011300 Carpinus fangiana HOM05D005157 ORTHO05D006652 2.4e-14 81.6 50 86.0
Haze_23783 Corylus avellana HOM05D005157 ORTHO05D006652 2.4e-14 81.6 50 86.0
FAN21G2652 Fragaria x ananassa HOM05D005157 ORTHO05D006652 2.4e-14 81.6 56 78.6
MD03G1120700 Malus domestica HOM05D005157 ORTHO05D006652 2.4e-14 81.6 41 95.1
Nn2g10829 Nelumbo nucifera HOM05D005157 ORTHO05D006652 2.4e-14 81.6 49 85.7
TWI31G1055 Tripterygium wilfordii HOM05D005157 ORTHO05D006652 2.4e-14 81.6 41 95.1
ATR0048G044 Amborella trichopoda HOM05D005157 ORTHO05D006652 4.1e-14 80.9 42 90.5
Duzib168G1383 Durio zibethinus HOM05D005157 ORTHO05D006652 4.1e-14 80.9 49 83.7
MBI10_g39178_MAGBIO Magnolia biondii HOM05D005157 ORTHO05D006652 4.1e-14 80.9 48 83.3
CANSAT78G0434 Cannabis sativa HOM05D005157 ORTHO05D006652 5.3e-14 80.5 49 85.7
MD11G1139300 Malus domestica HOM05D005157 ORTHO05D006652 5.3e-14 80.5 41 95.1
TWI79G1101 Tripterygium wilfordii HOM05D005157 ORTHO05D006652 5.3e-14 80.5 41 95.1
CiPaw.14G084700 Carya illinoinensis HOM05D005157 ORTHO05D006652 6.9e-14 80.1 56 76.8
PGR119G0190 Punica granatum HOM05D005157 ORTHO05D006652 6.9e-14 80.1 41 92.7
Sabra04G0143600 Salix brachista HOM05D005157 ORTHO05D006652 6.9e-14 80.1 50 78.0
FAN16G1661 Fragaria x ananassa HOM05D005157 ORTHO05D006652 9.0e-14 79.7 56 76.8
Glyma.12G076900 Glycine max HOM05D005157 ORTHO05D006652 9.0e-14 79.7 49 83.7
Dinv32724 Davidia involucrata HOM05D005157 ORTHO05D006652 1.2e-13 79.3 49 83.7
Potri.009G010600 Populus trichocarpa HOM05D005157 ORTHO05D006652 1.2e-13 79.3 49 83.7
QL01p021518 Quercus lobata HOM05D005157 ORTHO05D006652 1.2e-13 79.3 49 81.6
Sabra09G0006500 Salix brachista HOM05D005157 ORTHO05D006652 1.2e-13 79.3 49 83.7
THA.LOC104826376 Tarenaya hassleriana HOM05D005157 ORTHO05D006652 1.2e-13 79.3 49 81.6
Sed0016947 Sechium edule HOM05D005157 ORTHO05D006652 1.5e-13 79.0 49 81.6
Aqoxy5G02347 Aquilegia oxysepala HOM05D005157 ORTHO05D006652 2.0e-13 78.6 49 79.6
AL7G25280 Arabidopsis lyrata HOM05D005157 ORTHO05D006652 2.0e-13 78.6 49 79.6
FAN25G2587 Fragaria x ananassa HOM05D005157 ORTHO05D006652 2.0e-13 78.6 49 83.7
vmacro03211 Vaccinium macrocarpon HOM05D005157 ORTHO05D006652 2.0e-13 78.6 49 81.6
Aa31LG5G10030 Aethionema arabicum HOM05D005157 ORTHO05D006652 2.6e-13 78.2 49 79.6
arahy.Tifrunner.gnm1.ann1.SE8XGI Arachis hypogaea HOM05D005157 ORTHO05D006652 2.6e-13 78.2 49 79.6
arahy.Tifrunner.gnm1.ann1.T9YDZ2 Arachis hypogaea HOM05D005157 ORTHO05D006652 2.6e-13 78.2 49 79.6
CARHR235170 Cardamine hirsuta HOM05D005157 ORTHO05D006652 2.6e-13 78.2 41 87.8
Ca_19285_v3 Cicer arietinum L. HOM05D005157 ORTHO05D006652 2.6e-13 78.2 49 81.6
Sc20g0002840 Simmondsia chinensis HOM05D005157 ORTHO05D006652 2.6e-13 78.2 41 90.2
arahy.Tifrunner.gnm1.ann1.7C35UG Arachis hypogaea HOM05D005157 ORTHO05D006652 3.4e-13 77.8 49 79.6
arahy.Tifrunner.gnm1.ann1.PZ74PR Arachis hypogaea HOM05D005157 ORTHO05D006652 3.4e-13 77.8 49 79.6
MELO3C025782.2 Cucumis melo HOM05D005157 ORTHO05D006652 3.4e-13 77.8 56 75.0
Psat7g192080 Pisum sativum HOM05D005157 ORTHO05D006652 3.4e-13 77.8 48 81.2
Potri.004G212500 Populus trichocarpa HOM05D005157 ORTHO05D006652 3.4e-13 77.8 56 71.4
EL10Ac7g16615 Beta vulgaris HOM05D005157 ORTHO05D006652 4.5e-13 77.4 41 87.8
A01p18680 Brassica napus HOM05D005157 ORTHO05D006652 4.5e-13 77.4 49 77.6
C01p23670 Brassica napus HOM05D005157 ORTHO05D006652 4.5e-13 77.4 49 77.6
BolC1t02314H Brassica oleracea HOM05D005157 ORTHO05D006652 4.5e-13 77.4 49 77.6
BraA01t01817Z Brassica rapa HOM05D005157 ORTHO05D006652 4.5e-13 77.4 49 77.6
Carub.0007s1336 Capsella rubella HOM05D005157 ORTHO05D006652 4.5e-13 77.4 49 77.6
Sp7g25430 Schrenkiella parvula HOM05D005157 ORTHO05D006652 4.5e-13 77.4 49 77.6
AT4G27490 Arabidopsis thaliana HOM05D005157 ORTHO05D006652 5.9e-13 77.0 41 85.4
Rhsim13G0095800 Rhododendron simsii HOM05D005157 ORTHO05D006652 5.9e-13 77.0 49 79.6
TPR.G10725 Trifolium pratense HOM05D005157 ORTHO05D006652 5.9e-13 77.0 49 79.6
AUR62026913 Chenopodium quinoa HOM05D005157 ORTHO05D006652 7.6e-13 76.6 41 85.4
AUR62039868 Chenopodium quinoa HOM05D005157 ORTHO05D006652 7.6e-13 76.6 41 85.4
ClCG02G021260 Citrullus lanatus HOM05D005157 ORTHO05D006652 7.6e-13 76.6 56 75.0
COL.COLO4_18312 Corchorus olitorius HOM05D005157 ORTHO05D006652 7.6e-13 76.6 56 75.0
Glyma.11G145000 Glycine max HOM05D005157 ORTHO05D006652 7.6e-13 76.6 49 79.6
Medtr4g058720 Medicago truncatula HOM05D005157 ORTHO05D006652 7.6e-13 76.6 48 79.2
Nitab4.5_0003747g0010 Nicotiana tabacum HOM05D005157 ORTHO05D006652 7.6e-13 76.6 49 81.6
GSVIVG01025209001 Vitis vinifera HOM05D005157 ORTHO05D006652 7.6e-13 76.6 49 79.6
Actinidia07149 Actinidia chinensis HOM05D005157 ORTHO05D006652 1.0e-12 76.3 49 79.6
Actinidia24113 Actinidia chinensis HOM05D005157 ORTHO05D006652 1.0e-12 76.3 49 79.6
Thhalv10026036m.g Eutrema salsugineum HOM05D005157 ORTHO05D006652 1.0e-12 76.3 49 77.6
Lalb_Chr01g0004391 Lupinus albus HOM05D005157 ORTHO05D006652 1.3e-12 75.9 49 77.6
PSO339G6554 Papaver somniferum HOM05D005157 ORTHO05D006652 1.3e-12 75.9 41 87.8
PSO801G0513 Papaver somniferum HOM05D005157 ORTHO05D006652 1.3e-12 75.9 41 87.8
Atru.chr3.3604 Acer truncatum HOM05D005157 ORTHO05D006652 1.7e-12 75.5 48 81.2
CSS0048550 Camellia sinensis var. sinensis HOM05D005157 ORTHO05D006652 2.2e-12 75.1 40 90.0
CsaV3_6G014010 Cucumis sativus L. HOM05D005157 ORTHO05D006652 2.2e-12 75.1 56 71.4
Ah.08g211710 Amaranthus hybridus HOM05D005157 ORTHO05D006652 2.9e-12 74.7 41 85.4
TPR.G6155 Trifolium pratense HOM05D005157 ORTHO05D006652 2.9e-12 74.7 48 79.2
Lalb_Chr03g0027481 Lupinus albus HOM05D005157 ORTHO05D006652 3.8e-12 74.3 53 73.6
Phvul.011G080900 Phaseolus vulgaris HOM05D005157 ORTHO05D006652 3.8e-12 74.3 49 77.6
SEGI_15627 Sequoiadendron giganteum HOM05D005157 ORTHO05D006652 3.8e-12 74.3 43 76.7
VMungo1127G1275 Vigna mungo HOM05D005157 ORTHO05D006652 3.8e-12 74.3 49 77.6
Zm00001eb328370 Zea mays HOM05D005157 ORTHO05D006652 3.8e-12 74.3 41 82.9
Nitab4.5_0000181g0160 Nicotiana tabacum HOM05D005157 ORTHO05D006652 5.0e-12 73.9 49 77.6
CAN.G59.23 Capsicum annuum HOM05D005157 ORTHO05D006652 6.5e-12 73.6 49 79.6
CDE04G2999 Ceratophyllum demersum HOM05D005157 ORTHO05D006652 6.5e-12 73.6 49 75.5
Peaxi162Scf00858g00217 Petunia axillaris HOM05D005157 ORTHO05D006652 6.5e-12 73.6 49 77.6
CAN.G741.13 Capsicum annuum HOM05D005157 ORTHO05D006652 8.4e-12 73.2 49 77.6
Cc01_g10930 Coffea canephora HOM05D005157 ORTHO05D006652 8.4e-12 73.2 51 76.5
Os03g0844450 Oryza sativa ssp. japonica HOM05D005157 ORTHO05D006652 8.4e-12 73.2 41 80.5
SHI32600 Sapria himalayana HOM05D005157 ORTHO05D006652 8.4e-12 73.2 55 65.5
Hund01506 Selenicereus undatus HOM05D005157 ORTHO05D006652 8.4e-12 73.2 41 85.4
Solyc06g005860.3 Solanum lycopersicum HOM05D005157 ORTHO05D006652 1.1e-11 72.8 49 77.6
Sopen06g001830 Solanum pennellii HOM05D005157 ORTHO05D006652 1.1e-11 72.8 49 77.6
DCAR_003448 Daucus carota HOM05D000076 ORTHO05D003143 1.4e-11 72.4 49 77.6
Os08g0116800 Oryza sativa ssp. japonica HOM05D005157 ORTHO05D006652 1.4e-11 72.4 41 80.5
BcaC06g32687 Brassica carinata HOM05D005157 ORTHO05D006652 1.9e-11 72.0 48 75.0
C07p55510 Brassica napus HOM05D005157 ORTHO05D006652 1.9e-11 72.0 48 75.0
BolC7t46030H Brassica oleracea HOM05D005157 ORTHO05D006652 1.9e-11 72.0 48 75.0
Lj3g0007277 Lotus japonicus HOM05D005157 ORTHO05D006652 1.9e-11 72.0 49 75.5
CDE03G0292 Ceratophyllum demersum HOM05D005157 ORTHO05D006652 2.5e-11 71.6 49 73.5
FvH4_1g26690 Fragaria vesca HOM05D005157 ORTHO05D035671 2.5e-11 71.6 42 81.0
PGSC0003DMG400020831 Solanum tuberosum HOM05D005157 ORTHO05D006652 2.5e-11 71.6 49 75.5
Cpa.g.sc65.7 Carica papaya HOM05D005157 ORTHO05D006652 3.2e-11 71.2 41 87.8
Eucgr.J00908 Eucalyptus grandis HOM05D005157 ORTHO05D006652 4.2e-11 70.9 47 80.9
HPP92_016484 Vanilla planifolia HOM05D005157 ORTHO05D006652 7.2e-11 70.1 41 80.5
Lsat_1_v5_gn_2_98721 Lactuca sativa HOM05D005157 ORTHO05D006652 1.2e-10 69.3 39 84.6
ECA238G0155 Erigeron canadensis HOM05D005157 ORTHO05D006652 1.6e-10 68.9 39 84.6
Pp3c3_18310 Physcomitrium patens HOM05D005157 ORTHO05D006652 4.6e-10 67.4 49 63.3
Migut.D02241 Erythranthe guttata HOM05D005157 ORTHO05D006652 6.1e-10 67.0 37 86.5
MD02G1274400 Malus domestica HOM05D005157 ORTHO05D035671 6.1e-10 67.0 41 80.5
MD09G1244800 Malus domestica HOM05D005157 ORTHO05D035671 6.1e-10 67.0 41 80.5
SGA_v2.0_scaffold180G39644 Striga asiatica HOM05D005157 ORTHO05D006652 6.1e-10 67.0 37 86.5
HanXRQChr14g0452641 Helianthus annuus HOM05D005157 ORTHO05D006652 7.9e-10 66.6 39 79.5
unitig_747.g21986 Utricularia gibba HOM05D005157 ORTHO05D006652 1.0e-09 66.2 37 83.8
MSTRG.18672 Avicennia marina HOM05D005157 ORTHO05D006652 2.3e-09 65.1 37 81.1
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 3.9e-09 64.3 48 64.6
AagrBONN_evm.TU.Sc2ySwM_228.2949 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.5e-08 62.4 55 56.4
Mapoly0055s0093 Marchantia polymorpha HOM05D005157 ORTHO05D006652 5.7e-08 60.5 45 66.7
MCO07G684 Micromonas commoda HOM05D005157 ORTHO05D006652 7.4e-08 60.1 42 61.9
Duzib170G0112 Durio zibethinus HOM05D005157 ORTHO05D006652 1.3e-07 59.3 31 90.3
SMO358G0168 Selaginella moellendorffii HOM05D005157 ORTHO05D006652 1.4e-06 55.8 39 64.1


User provided reference genes

Program Settings