Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0339141 Rosa chinensis HOM05D000274 ORTHO05D001466 1.1e-33 146.0 72 100.0
Oeu037277.2 Olea europaea HOM05D000274 ORTHO05D001466 7.9e-11 70.1 63 58.7
Ah.09g231870 Amaranthus hybridus HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
CSS0014259 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
CiPaw.05G016700 Carya illinoinensis HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
CiPaw.06G166300 Carya illinoinensis HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
Cc02_g19750 Coffea canephora HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
DCAR_021957 Daucus carota HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
Dinv42229 Davidia involucrata HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
Eucgr.I01073 Eucalyptus grandis HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
FvH4_2g04150 Fragaria vesca HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
FAN15G0577 Fragaria x ananassa HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
FAN20G0636 Fragaria x ananassa HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
FAN24G2843 Fragaria x ananassa HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
FAN27G3447 Fragaria x ananassa HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
HanXRQChr16g0509271 Helianthus annuus HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
Hma1.2p1_1023F.1_g248840 Hydrangea macrophylla HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
Hma1.2p1_1773F.1_g301710 Hydrangea macrophylla HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
MD05G1098400 Malus domestica HOM05D000274 ORTHO05D001466 3.0e-10 68.2 59 62.7
MD10G1104200 Malus domestica HOM05D000274 ORTHO05D001466 3.0e-10 68.2 59 62.7
Nitab4.5_0001259g0100 Nicotiana tabacum HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
Nitab4.5_0004467g0010 Nicotiana tabacum HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
Peaxi162Scf00003g02635 Petunia axillaris HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
Prupe.8G143200 Prunus persica HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
RcHm_v2.0_Chr6g0253511 Rosa chinensis HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
Sc18g0003500 Simmondsia chinensis HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
Thecc.02G115600 Theobroma cacao HOM05D000274 ORTHO05D001466 3.0e-10 68.2 35 88.6
EL10Ac8g19382 Beta vulgaris HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 85.7
BcaB04g17280 Brassica carinata HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 88.6
A08p03440 Brassica napus HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 88.6
BraA08t32375Z Brassica rapa HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 88.6
AUR62034086 Chenopodium quinoa HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 85.7
AUR62042997 Chenopodium quinoa HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 85.7
Haze_10235 Corylus avellana HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 88.6
MELO3C018514.2 Cucumis melo HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 88.6
Thhalv10011565m.g Eutrema salsugineum HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 88.6
PGR120G0008 Punica granatum HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 88.6
PGR142G0102 Punica granatum HOM05D000274 ORTHO05D001466 5.1e-10 67.4 35 88.6
CANSAT25G3838 Cannabis sativa HOM05D000274 ORTHO05D001466 6.7e-10 67.0 61 59.0
ClCG02G006760 Citrullus lanatus HOM05D000274 ORTHO05D001466 6.7e-10 67.0 35 85.7
Lsat_1_v5_gn_7_85281 Lactuca sativa HOM05D000274 ORTHO05D001466 6.7e-10 67.0 35 85.7
Lj5g0011808 Lotus japonicus HOM05D000274 ORTHO05D001466 6.7e-10 67.0 59 61.0
arahy.Tifrunner.gnm1.ann1.28MAAX Arachis hypogaea HOM05D000274 ORTHO05D001466 8.8e-10 66.6 59 59.3
arahy.Tifrunner.gnm1.ann1.NM7WM1 Arachis hypogaea HOM05D000274 ORTHO05D001466 8.8e-10 66.6 59 59.3
CAN.G663.8 Capsicum annuum HOM05D000274 ORTHO05D001466 8.8e-10 66.6 35 82.9
Aa31LG10G4160 Aethionema arabicum HOM05D000274 ORTHO05D001466 1.1e-09 66.2 35 85.7
AL1G57520 Arabidopsis lyrata HOM05D000274 ORTHO05D001466 1.1e-09 66.2 35 85.7
AT1G49970 Arabidopsis thaliana HOM05D000274 ORTHO05D001466 1.1e-09 66.2 35 85.7
C03p89410 Brassica napus HOM05D000274 ORTHO05D001466 1.1e-09 66.2 35 85.7
BolC3t21255H Brassica oleracea HOM05D000274 ORTHO05D001466 1.1e-09 66.2 35 85.7
Carub.0001s3915 Capsella rubella HOM05D000274 ORTHO05D001466 1.1e-09 66.2 35 85.7
CsaV3_7G007880 Cucumis sativus L. HOM05D000274 ORTHO05D001466 1.1e-09 66.2 35 82.9
Sp1g36820 Schrenkiella parvula HOM05D000274 ORTHO05D001466 1.1e-09 66.2 35 85.7
Cpa.g.sc106.60 Carica papaya HOM05D000274 ORTHO05D001466 1.5e-09 65.9 35 82.9
Phvul.007G044600 Phaseolus vulgaris HOM05D000274 ORTHO05D001466 1.5e-09 65.9 59 57.6
CARHR040000 Cardamine hirsuta HOM05D000274 ORTHO05D001466 2.0e-09 65.5 35 82.9
Glyma.10G257800 Glycine max HOM05D000274 ORTHO05D001466 2.0e-09 65.5 59 59.3
Migut.N01144 Erythranthe guttata HOM05D000274 ORTHO05D001466 2.5e-09 65.1 35 82.9
Migut.O00817 Erythranthe guttata HOM05D000274 ORTHO05D001466 2.5e-09 65.1 35 82.9
Gohir.A04G118600 Gossypium hirsutum HOM05D000274 ORTHO05D001466 2.5e-09 65.1 35 82.9
Gohir.D04G160300 Gossypium hirsutum HOM05D000274 ORTHO05D001466 2.5e-09 65.1 35 82.9
Gorai.012G147700 Gossypium raimondii HOM05D000274 ORTHO05D001466 2.5e-09 65.1 35 82.9
Oeu021365.1 Olea europaea HOM05D000274 ORTHO05D001466 2.5e-09 65.1 35 85.7
SalBow3G3460 Salvia bowleyana HOM05D000274 ORTHO05D001466 2.5e-09 65.1 35 82.9
TAR628G0151 Trochodendron aralioides HOM05D000274 ORTHO05D001466 2.5e-09 65.1 35 82.9
Lalb_Chr02g0145041 Lupinus albus HOM05D000274 ORTHO05D001466 3.3e-09 64.7 59 59.3
Lalb_Chr06g0165201 Lupinus albus HOM05D000274 ORTHO05D001466 3.3e-09 64.7 59 59.3
PSO017G2520 Papaver somniferum HOM05D000274 ORTHO05D001466 3.3e-09 64.7 35 82.9
PSO170G6648 Papaver somniferum HOM05D000274 ORTHO05D001466 3.3e-09 64.7 35 82.9
TWI14G0876 Tripterygium wilfordii HOM05D000274 ORTHO05D001466 3.3e-09 64.7 35 82.9
unitig_699.g19871 Utricularia gibba HOM05D000274 ORTHO05D001466 3.3e-09 64.7 35 82.9
GSVIVG01037850001 Vitis vinifera HOM05D000274 ORTHO05D001466 3.3e-09 64.7 35 82.9
ATR0208G009 Amborella trichopoda HOM05D000274 ORTHO05D001466 4.3e-09 64.3 35 85.7
ECA236G3844 Erigeron canadensis HOM05D000274 ORTHO05D001466 4.3e-09 64.3 35 85.7
Glyma.20G133300 Glycine max HOM05D000274 ORTHO05D001466 4.3e-09 64.3 59 57.6
Lsat_1_v5_gn_3_87560 Lactuca sativa HOM05D000274 ORTHO05D001466 4.3e-09 64.3 35 82.9
VMungo0720G2220 Vigna mungo HOM05D000274 ORTHO05D001466 7.4e-09 63.5 59 55.9
Atru.chr5.3003 Acer truncatum HOM05D000274 ORTHO05D001466 9.7e-09 63.2 40 72.5
Ca_11039_v3 Cicer arietinum L. HOM05D000274 ORTHO05D001466 9.7e-09 63.2 62 53.2
FAN09G3942 Fragaria x ananassa HOM05D000274 ORTHO05D001466 9.7e-09 63.2 35 82.9
Lsat_1_v5_gn_8_34420 Lactuca sativa HOM05D000274 ORTHO05D001466 9.7e-09 63.2 36 80.6
Sed0025433 Sechium edule HOM05D000274 ORTHO05D001466 9.7e-09 63.2 35 80.0
CDE04G3251 Ceratophyllum demersum HOM05D000274 ORTHO05D001466 1.3e-08 62.8 35 82.9
CDE07G0776 Ceratophyllum demersum HOM05D000274 ORTHO05D001466 1.3e-08 62.8 35 82.9
Lsat_1_v5_gn_4_176741 Lactuca sativa HOM05D000274 ORTHO05D001466 1.7e-08 62.4 34 82.4
Lsat_1_v5_gn_5_54380 Lactuca sativa HOM05D000274 ORTHO05D001466 1.7e-08 62.4 35 77.1
Psat6g215320 Pisum sativum HOM05D000274 ORTHO05D001466 1.7e-08 62.4 61 50.8
Medtr1g106550 Medicago truncatula HOM05D000274 ORTHO05D001466 2.2e-08 62.0 59 54.2
BcaB07g33445 Brassica carinata HOM05D000274 ORTHO05D001466 3.7e-08 61.2 35 80.0
Potri.009G089300 Populus trichocarpa HOM05D000274 ORTHO05D001466 3.7e-08 61.2 35 80.0
Solyc10g049710.2 Solanum lycopersicum HOM05D000274 ORTHO05D001466 3.7e-08 61.2 35 74.3
Sopen10g020800 Solanum pennellii HOM05D000274 ORTHO05D001466 3.7e-08 61.2 35 74.3
PGSC0003DMG400025349 Solanum tuberosum HOM05D000274 ORTHO05D001466 3.7e-08 61.2 35 74.3
Ciclev10028638m.g Citrus clementina HOM05D000274 ORTHO05D001466 8.2e-08 60.1 35 77.1
Mapoly0165s0020 Marchantia polymorpha HOM05D000274 ORTHO05D001466 8.2e-08 60.1 67 46.3
Atru.chr5.2377 Acer truncatum HOM05D000274 ORTHO05D001466 1.4e-07 59.3 35 77.1
Manes.07G061800 Manihot esculenta HOM05D000274 ORTHO05D001466 1.4e-07 59.3 35 77.1
Pp3c16_17780 Physcomitrium patens HOM05D000274 ORTHO05D001466 1.4e-07 59.3 35 68.6
AagrBONN_evm.TU.Sc2ySwM_368.1215 Anthoceros agrestis HOM05D000274 ORTHO05D001466 2.4e-07 58.5 67 43.3
CBR_g39885 Chara braunii HOM05D000274 ORTHO05D001466 3.1e-07 58.2 35 68.6
Pp3c25_4310 Physcomitrium patens HOM05D000274 ORTHO05D001466 3.1e-07 58.2 35 65.7
Sabra09G0069200 Salix brachista HOM05D000274 ORTHO05D001466 3.1e-07 58.2 35 77.1
Hund12580 Selenicereus undatus HOM05D000274 ORTHO05D001466 4.1e-07 57.8 37 67.6
TPR.G27091 Trifolium pratense HOM05D000274 ORTHO05D001466 4.1e-07 57.8 33 75.8
Manes.10G079900 Manihot esculenta HOM05D000274 ORTHO05D001466 5.3e-07 57.4 35 74.3
Lsat_1_v5_gn_5_63041 Lactuca sativa HOM05D002530 ORTHO05D002802 6.9e-07 57.0 65 44.6
Os05g0592100 Oryza sativa ssp. japonica HOM05D000274 ORTHO05D001466 1.2e-06 56.2 34 70.6
Zm00001eb297340 Zea mays HOM05D000274 ORTHO05D001466 1.2e-06 56.2 34 70.6
SMO116G0050 Selaginella moellendorffii HOM05D000274 ORTHO05D001466 2.0e-06 55.5 35 68.6
THA.LOC104815211 Tarenaya hassleriana HOM05D000274 ORTHO05D001466 2.6e-06 55.1 35 68.6
THA.LOC104815223 Tarenaya hassleriana HOM05D000274 ORTHO05D001466 2.6e-06 55.1 35 68.6
THA.LOC104815404 Tarenaya hassleriana HOM05D000274 ORTHO05D001466 2.6e-06 55.1 35 68.6
Sabra16G0184700 Salix brachista HOM05D000274 ORTHO05D001466 4.5e-06 54.3 35 74.3


User provided reference genes

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