Gene: Sopen10g020800

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g020800
  • Transcript Identifier Sopen10g020800.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 57607452-57612613 : negative

Gene Family Information

  • ID HOM05D000274
  • #Genes/#Species 1592/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g020800.1

Descriptions

  • Description Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). | CLP protease proteolytic subunit 1 (CLPR1) | FUNCTIONS IN: serine-type endopeptidase activity | INVOLVED IN: proteolysis | LOCATED IN: chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma, chloroplast thylakoid | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP | BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006508
IEA
InterProproteolysis
GO:0006396
ISO
PLAZA Integrative OrthologyRNA processing AT1G49970
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G49970
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT1G49970

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004176
IEA
InterProATP-dependent peptidase activity
GO:0004252
IEA
InterProserine-type endopeptidase activity
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT1G49970

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT1G49970
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G49970
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid AT1G49970
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT1G49970
GO:0009840
ISO
PLAZA Integrative Orthologychloroplastic endopeptidase Clp complex AT1G49970
GO:0009532
ISO
PLAZA Integrative Orthologyplastid stroma AT1G49970

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA
IPR001907 ATP-dependent Clp protease proteolytic subunit
IPR029045 ClpP/crotonase-like domain superfamily
Mapman id Description
19.4.2.9.2 Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.non-proteolytic core component ClpR