Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1440.6 727 100.0
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1347.0 758 91.0
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1343.2 758 90.8
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1250.7 730 86.3
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1231.9 756 84.8
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1219.9 730 85.3
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1211.4 725 84.6
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1209.5 743 83.4
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1207.2 743 83.0
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1190.3 727 84.2
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 0.0e+00 1188.7 661 91.5
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1186.8 730 83.4
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1179.1 737 82.1
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1176.0 731 82.5
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1174.8 741 81.0
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1171.4 705 84.1
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1168.3 726 81.5
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1167.9 720 82.8
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1166.8 718 82.9
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1166.4 739 81.1
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1166.4 709 83.6
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1164.1 728 82.1
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1162.5 726 81.8
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1162.1 727 81.2
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1161.7 728 81.3
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 731 81.3
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1158.3 729 81.6
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1157.1 732 81.6
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1156.4 729 80.8
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1153.7 728 80.4
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1151.3 729 80.9
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1150.6 731 81.3
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1148.7 735 80.1
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1147.9 709 82.8
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1146.7 708 81.8
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1146.0 736 78.7
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1145.2 736 80.4
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1144.8 690 83.9
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1144.4 733 79.8
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1141.3 728 80.5
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1140.6 735 80.1
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1140.2 722 80.7
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1137.9 695 82.6
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1137.1 704 82.0
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1136.7 716 80.3
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1134.8 755 78.4
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1134.4 715 80.8
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1134.0 653 86.4
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1132.5 703 83.1
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1131.7 725 79.7
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1123.2 688 82.4
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1120.1 778 74.2
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1120.1 778 74.2
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1118.2 714 79.3
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1113.2 720 79.2
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1112.4 638 85.7
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1107.4 645 85.1
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1107.0 659 83.6
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1107.0 690 81.2
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 702 79.6
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1104.7 659 83.5
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1104.7 638 83.5
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1104.0 696 80.3
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1101.3 670 83.0
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1101.3 670 83.0
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1100.5 699 80.0
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1099.3 725 78.6
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1099.0 711 79.3
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1095.1 708 79.2
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1092.4 813 71.7
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1091.6 749 75.3
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 0.0e+00 1085.1 743 77.0
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1084.7 713 78.8
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1083.9 654 81.2
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1083.2 672 82.1
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1083.2 669 80.0
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1082.0 722 78.5
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1080.9 735 76.7
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1080.1 660 82.1
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 0.0e+00 1076.6 929 63.7
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 7.5e-311 1070.1 801 70.9
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.3e-305 1052.7 728 75.5
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 4.9e-302 1040.8 783 70.8
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.8e-291 1005.7 566 89.6
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 8.7e-291 1003.4 694 73.5
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 8.7e-291 1003.4 683 72.5
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.3e-283 979.5 556 86.9
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 3.4e-279 964.9 630 75.9
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 3.8e-270 934.9 523 88.3
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 2.6e-266 922.2 558 83.7
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 3.3e-266 921.8 562 83.1
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 2.2e-265 919.1 651 72.8
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 3.7e-265 918.3 530 86.2
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 6.3e-265 917.5 599 75.0
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 5.9e-263 911.0 532 84.0
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 1.7e-262 909.4 527 85.8
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 3.6e-260 901.7 590 78.5
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 7.4e-258 894.0 707 65.2
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 4.7e-252 874.8 605 74.2
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 3.2e-245 852.0 623 68.5
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 8.6e-238 827.4 512 81.4
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 8.0e-236 820.8 507 82.6
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 4.9e-225 785.0 612 64.9
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 8.6e-214 747.7 504 76.2
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 3.8e-193 679.1 401 82.0
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 4.6e-191 672.2 410 82.9
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 7.6e-186 654.8 402 79.9
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 6.7e-182 641.7 352 88.9
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 3.0e-174 616.3 401 76.8
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 2.9e-153 546.6 364 77.2
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.6e-141 506.9 447 62.6
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.2e-133 481.5 594 44.1
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 4.0e-126 456.4 662 39.9
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 4.7e-111 406.4 370 61.9
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 8.0e-111 405.6 652 39.3
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 2.2e-108 397.5 369 59.1
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 3.1e-102 377.1 502 43.4
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 4.0e-94 350.1 329 58.4
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 4.1e-91 340.1 229 77.7
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.3e-81 308.5 172 89.5
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 3.1e-70 270.8 161 82.6
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.3e-56 223.8 166 63.9
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.8e-55 221.1 197 58.4
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 5.8e-53 213.4 128 84.4
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 2.2e-47 194.9 114 86.8
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 1.6e-42 178.7 251 46.2
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 3.0e-41 174.5 182 49.5
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 8.2e-39 166.4 180 50.6
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 3.1e-38 164.5 143 59.4
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 1.1e-35 156.0 112 68.8
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.2e-34 152.5 106 68.9
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 1.0e-33 149.4 95 75.8
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 5.1e-33 147.1 84 86.9
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 1.7e-31 142.1 83 81.9
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 9.1e-30 136.3 139 57.6
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 9.1e-30 136.3 71 81.7
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 2.9e-28 131.3 97 73.2
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 5.5e-27 127.1 88 73.9
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 4.4e-24 117.5 97 67.0
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 3.2e-19 101.3 73 71.2
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 8.3e-15 86.7 75 62.7
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 1.1e-14 86.3 47 74.5
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 2.0e-13 82.0 77 55.8
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 2.7e-13 81.6 48 72.9
SEGI_19526 Sequoiadendron giganteum HOM05D005018 ORTHO05D043556 3.1e-06 58.2 28 89.3


User provided reference genes

Program Settings