Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 4.3e-54 214.5 118 100.0
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 3.3e-22 108.6 69 78.3
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 9.6e-22 107.1 69 76.8
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 9.6e-22 107.1 69 76.8
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 9.6e-22 107.1 69 76.8
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 9.6e-22 107.1 69 76.8
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 9.6e-22 107.1 69 76.8
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.6e-21 106.3 69 75.4
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 2.8e-21 105.5 69 75.4
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 2.8e-21 105.5 69 76.8
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 4.8e-21 104.8 69 75.4
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 6.2e-21 104.4 69 72.5
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 8.1e-21 104.0 69 73.9
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 1.1e-20 103.6 61 83.6
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 1.4e-20 103.2 118 50.8
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 1.4e-20 103.2 69 71.0
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 1.8e-20 102.8 69 73.9
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 2.4e-20 102.4 69 72.5
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 2.4e-20 102.4 69 72.5
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 2.4e-20 102.4 69 72.5
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 2.4e-20 102.4 60 81.7
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 3.1e-20 102.1 69 71.0
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 3.1e-20 102.1 69 72.5
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 3.1e-20 102.1 69 72.5
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 4.0e-20 101.7 69 72.5
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 4.0e-20 101.7 69 72.5
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 4.0e-20 101.7 61 82.0
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 4.0e-20 101.7 69 72.5
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 5.3e-20 101.3 69 72.5
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 5.3e-20 101.3 53 88.7
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 5.3e-20 101.3 69 71.0
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.3e-20 101.3 69 71.0
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 5.3e-20 101.3 69 71.0
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 6.9e-20 100.9 53 90.6
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 6.9e-20 100.9 69 72.5
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 6.9e-20 100.9 69 72.5
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 9.0e-20 100.5 69 71.0
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 9.0e-20 100.5 69 69.6
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.2e-19 100.1 69 71.0
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 1.2e-19 100.1 64 76.6
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 1.2e-19 100.1 61 78.7
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 1.2e-19 100.1 69 72.5
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 1.2e-19 100.1 69 72.5
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 1.2e-19 100.1 69 72.5
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 1.2e-19 100.1 69 72.5
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 1.2e-19 100.1 69 71.0
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 1.2e-19 100.1 69 71.0
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 1.5e-19 99.8 69 71.0
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 1.5e-19 99.8 69 71.0
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 1.5e-19 99.8 69 69.6
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 1.5e-19 99.8 69 69.6
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 1.5e-19 99.8 61 78.7
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 2.0e-19 99.4 61 78.7
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 2.0e-19 99.4 61 78.7
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 2.0e-19 99.4 61 78.7
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 2.6e-19 99.0 64 76.6
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 2.6e-19 99.0 61 77.0
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 2.6e-19 99.0 53 86.8
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 2.6e-19 99.0 69 69.6
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 2.6e-19 99.0 53 88.7
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 2.6e-19 99.0 61 77.0
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 2.6e-19 99.0 60 80.0
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 3.4e-19 98.6 68 70.6
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 3.4e-19 98.6 61 78.7
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 3.4e-19 98.6 69 72.5
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 4.5e-19 98.2 61 77.0
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 4.5e-19 98.2 69 69.6
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 5.8e-19 97.8 69 69.6
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 5.8e-19 97.8 60 80.0
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 5.8e-19 97.8 61 75.4
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 5.8e-19 97.8 61 75.4
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 5.8e-19 97.8 61 75.4
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 5.8e-19 97.8 61 75.4
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 5.8e-19 97.8 69 68.1
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 5.8e-19 97.8 61 77.0
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.6e-19 97.4 69 68.1
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.6e-19 97.4 69 68.1
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 7.6e-19 97.4 69 69.6
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 9.9e-19 97.1 61 75.4
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 9.9e-19 97.1 61 75.4
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 1.3e-18 96.7 68 70.6
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.7e-18 96.3 52 84.6
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.7e-18 96.3 69 69.6
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 1.7e-18 96.3 69 66.7
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 1.7e-18 96.3 69 68.1
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 2.9e-18 95.5 69 66.7
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 3.8e-18 95.1 69 68.1
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 3.8e-18 95.1 69 68.1
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 1.4e-17 93.2 53 81.1
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 1.4e-17 93.2 53 83.0
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 4.2e-17 91.7 60 73.3
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 9.3e-17 90.5 65 66.2
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 9.3e-17 90.5 54 77.8
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 2.7e-16 89.0 65 66.2
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 1.0e-15 87.0 62 67.7
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 6.7e-15 84.3 66 63.6
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 1.9e-14 82.8 93 51.6
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 6.9e-12 74.3 69 52.2
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 4.5e-11 71.6 62 54.8
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 1.2e-08 63.5 66 48.5
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 1.6e-08 63.2 57 49.1
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 1.3e-07 60.1 67 46.3
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 1.8e-07 59.7 48 62.5


User provided reference genes

Program Settings