Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 3.5e-71 271.6 140 100.0
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 8.9e-51 203.8 122 86.1
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 2.2e-49 199.1 119 86.6
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.2e-49 199.1 119 86.6
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 3.8e-49 198.4 120 86.7
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.4e-48 194.5 118 85.6
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.1e-45 186.8 118 82.2
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 8.1e-44 180.6 113 83.2
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 9.9e-42 173.7 122 78.7
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.2e-41 172.6 122 77.0
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.8e-41 171.8 142 68.3
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.8e-41 171.8 122 77.0
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.4e-41 171.0 123 77.2
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.4e-41 171.0 123 77.2
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 6.4e-41 171.0 123 75.6
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 8.4e-41 170.6 122 74.6
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 1.9e-40 169.5 122 75.4
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 2.4e-40 169.1 123 75.6
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.4e-40 169.1 122 77.0
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 3.2e-40 168.7 123 74.8
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 3.2e-40 168.7 123 75.6
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 3.2e-40 168.7 121 74.4
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 5.4e-40 167.9 123 74.0
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 5.4e-40 167.9 122 73.0
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 7.1e-40 167.5 122 75.4
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 7.1e-40 167.5 122 73.0
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 9.3e-40 167.2 127 72.4
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.6e-39 166.4 123 72.4
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 1.6e-39 166.4 121 75.2
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.1e-39 166.0 122 73.8
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 2.7e-39 165.6 121 74.4
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 2.7e-39 165.6 122 73.0
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 2.7e-39 165.6 122 73.8
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 2.7e-39 165.6 123 74.8
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 3.5e-39 165.2 122 73.0
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 3.5e-39 165.2 122 73.0
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 3.5e-39 165.2 120 75.8
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.5e-39 165.2 122 75.4
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 3.5e-39 165.2 122 74.6
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 4.6e-39 164.9 123 73.2
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 4.6e-39 164.9 123 72.4
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 4.6e-39 164.9 123 73.2
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 4.6e-39 164.9 123 73.2
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.8e-39 164.1 129 72.9
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 7.8e-39 164.1 123 74.0
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 7.8e-39 164.1 120 75.0
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 7.8e-39 164.1 121 72.7
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 7.8e-39 164.1 121 72.7
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.3e-38 163.3 121 73.6
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.3e-38 163.3 121 73.6
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.3e-38 163.3 122 74.6
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.3e-38 163.3 122 72.1
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 1.3e-38 163.3 122 72.1
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.7e-38 162.9 123 71.5
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.7e-38 162.9 123 71.5
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 2.3e-38 162.5 122 73.0
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 2.3e-38 162.5 123 69.1
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 3.0e-38 162.2 123 69.9
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 3.0e-38 162.2 123 71.5
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 3.0e-38 162.2 122 73.8
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 3.0e-38 162.2 122 72.1
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 3.9e-38 161.8 123 70.7
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 3.9e-38 161.8 126 69.8
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 3.9e-38 161.8 122 72.1
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 5.1e-38 161.4 125 68.8
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 5.1e-38 161.4 120 72.5
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 6.6e-38 161.0 123 71.5
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 6.6e-38 161.0 123 69.9
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 6.6e-38 161.0 122 73.0
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 8.7e-38 160.6 121 71.1
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 1.1e-37 160.2 122 71.3
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.1e-37 160.2 123 69.9
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.1e-37 160.2 122 68.9
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.1e-37 160.2 122 68.9
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.1e-37 160.2 122 68.9
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.5e-37 159.8 116 76.7
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.5e-37 159.8 122 68.0
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.5e-37 159.8 123 69.9
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.9e-37 159.5 120 72.5
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 2.5e-37 159.1 123 70.7
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 2.5e-37 159.1 122 68.0
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 2.5e-37 159.1 123 70.7
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 2.5e-37 159.1 122 68.9
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 4.3e-37 158.3 121 70.2
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 4.3e-37 158.3 121 70.2
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 4.3e-37 158.3 120 71.7
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 4.3e-37 158.3 144 64.6
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 5.6e-37 157.9 117 76.9
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 5.6e-37 157.9 124 71.8
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 5.6e-37 157.9 126 70.6
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 5.6e-37 157.9 122 69.7
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 7.3e-37 157.5 121 70.2
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 7.3e-37 157.5 120 70.8
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 7.3e-37 157.5 121 70.2
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 7.3e-37 157.5 121 70.2
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 7.3e-37 157.5 120 70.8
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 7.3e-37 157.5 123 69.1
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 7.3e-37 157.5 123 68.3
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 7.3e-37 157.5 121 71.1
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 7.3e-37 157.5 115 73.0
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.6e-36 156.4 121 71.1
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 4.8e-36 154.8 121 69.4
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 4.8e-36 154.8 120 70.0
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 8.1e-36 154.1 123 69.1
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.1e-36 154.1 120 68.3
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 8.1e-36 154.1 122 69.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-35 153.7 121 68.6
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 1.1e-35 153.7 121 68.6
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.1e-35 153.7 119 70.6
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.4e-35 153.3 120 70.0
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.4e-35 153.3 115 73.0
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 1.8e-35 152.9 120 66.7
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 2.4e-35 152.5 130 68.5
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 3.1e-35 152.1 112 72.3
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.0e-35 151.8 122 68.0
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 5.3e-35 151.4 122 69.7
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 5.3e-35 151.4 122 69.7
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 6.9e-35 151.0 134 64.9
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.2e-34 150.2 124 68.5
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 1.5e-34 149.8 119 68.1
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 3.4e-34 148.7 121 66.9
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.4e-34 148.7 113 70.8
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.9e-34 147.1 113 70.8
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.7e-33 146.4 118 69.5
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.7e-33 146.4 119 71.4
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.7e-33 146.4 122 68.0
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.7e-33 146.4 113 70.8
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.7e-33 146.4 119 68.9
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.2e-33 146.0 113 69.9
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.9e-33 145.6 113 69.9
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 3.8e-33 145.2 112 70.5
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.9e-33 144.8 113 69.9
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.1e-32 143.7 115 70.4
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.9e-32 142.9 119 68.1
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 3.2e-32 142.1 121 64.5
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.2e-32 141.7 113 68.1
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 5.4e-32 141.4 115 69.6
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.7e-31 139.0 114 66.7
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 3.5e-31 138.7 114 69.3
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.6e-31 138.3 121 66.9
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 3.0e-30 135.6 113 68.1
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 5.6e-29 131.3 122 60.7
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.3e-28 130.2 125 60.0
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.8e-28 129.0 181 48.6
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 3.1e-27 125.6 116 62.9
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 9.0e-27 124.0 120 58.3
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 3.4e-26 122.1 119 59.7
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 6.0e-23 111.3 114 56.1
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 6.7e-22 107.8 126 54.0
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 1.6e-15 86.7 94 56.4
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 3.5e-15 85.5 76 68.4
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.8e-14 83.2 75 61.3
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.7e-14 81.3 121 48.8
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.9e-13 79.7 44 88.6
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 2.1e-12 76.3 54 72.2
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 5.3e-11 71.6 113 44.2
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 7.6e-10 67.8 113 40.7
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.9e-07 57.8 104 45.2
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.0e-06 57.4 101 41.6
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 5.1e-06 55.1 47 55.3


User provided reference genes

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