Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c11g0499571 Rosa chinensis HOM05D004863 ORTHO05D005802 1.6e-42 175.6 85 100.0
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 2.9e-36 154.8 74 100.0
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 1.1e-35 152.9 74 98.6
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 5.4e-35 150.6 73 98.6
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 5.4e-35 150.6 73 98.6
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 3.7e-31 137.9 73 91.8
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 3.7e-31 137.9 71 94.4
RcHm_v2.0_Chr7g0231171 Rosa chinensis HOM05D004863 ORTHO05D005802 3.1e-30 134.8 73 90.4
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.7e-28 129.0 73 86.3
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 6.4e-28 127.1 73 84.9
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 4.6e-26 120.9 73 83.6
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 1.3e-25 119.4 73 82.2
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.1e-18 95.5 53 88.7
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 1.5e-13 79.3 81 53.1
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 2.6e-13 78.6 79 57.0
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 3.4e-13 78.2 79 57.0
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 4.5e-13 77.8 79 53.2
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 7.7e-13 77.0 79 55.7
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 2.2e-12 75.5 79 53.2
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 3.8e-12 74.7 78 52.6
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 3.8e-12 74.7 76 56.6
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 6.5e-12 73.9 76 59.2
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 1.4e-11 72.8 79 53.2
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 1.4e-11 72.8 78 50.0
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.9e-11 72.4 77 53.2
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 2.5e-11 72.0 79 50.6
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 4.2e-11 71.2 76 52.6
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 4.2e-11 71.2 79 50.6
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 5.5e-11 70.9 77 49.4
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 5.5e-11 70.9 75 56.0
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.6e-10 69.3 78 48.7
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 4.6e-10 67.8 79 50.6
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 4.6e-10 67.8 79 48.1
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 6.1e-10 67.4 79 45.6
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 7.9e-10 67.0 75 53.3
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 1.0e-09 66.6 70 55.7
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 1.8e-09 65.9 76 47.4
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 1.8e-09 65.9 76 47.4
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 3.0e-09 65.1 80 51.2
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 8.8e-09 63.5 68 52.9
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 3.3e-08 61.6 79 48.1
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 3.3e-08 61.6 76 44.7
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 4.3e-08 61.2 75 50.7
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 4.3e-08 61.2 77 48.1
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 4.3e-08 61.2 73 46.6
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 5.7e-08 60.8 78 44.9
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 2.8e-07 58.5 79 44.3
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 2.8e-07 58.5 79 44.3
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 6.3e-07 57.4 77 48.1
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 8.2e-07 57.0 81 44.4
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.4e-06 56.2 82 43.9
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 1.4e-06 56.2 81 40.7
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 1.8e-06 55.8 76 51.3
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 5.3e-06 54.3 75 48.0
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 5.3e-06 54.3 70 44.3
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 9.1e-06 53.5 69 49.3
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 9.1e-06 53.5 69 49.3


User provided reference genes

Program Settings