Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 3.2e-26 120.9 59 100.0
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 9.4e-18 92.8 55 85.5
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 9.4e-18 92.8 55 85.5
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-14 79.7 59 64.4
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 1.1e-13 79.3 59 62.7
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.8e-13 78.6 59 61.0
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.8e-13 78.6 59 64.4
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 2.4e-13 78.2 59 61.0
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 3.1e-13 77.8 59 61.0
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 4.1e-13 77.4 55 65.5
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.2e-12 75.9 58 53.4
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.5e-12 75.5 58 53.4
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 2.0e-12 75.1 61 59.0
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.4e-12 74.3 59 61.0
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.4e-12 74.3 59 61.0
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.4e-12 74.3 59 61.0
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 3.4e-12 74.3 59 61.0
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 3.4e-12 74.3 60 58.3
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 3.4e-12 74.3 55 54.5
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 4.5e-12 73.9 57 56.1
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 4.5e-12 73.9 61 57.4
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 5.9e-12 73.6 53 60.4
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 7.7e-12 73.2 55 61.8
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 7.7e-12 73.2 57 56.1
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 7.7e-12 73.2 59 61.0
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 1.0e-11 72.8 59 55.9
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 1.0e-11 72.8 48 64.6
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 1.0e-11 72.8 58 55.2
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 1.7e-11 72.0 59 50.8
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 1.7e-11 72.0 59 50.8
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 1.7e-11 72.0 59 50.8
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 1.7e-11 72.0 53 58.5
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 2.2e-11 71.6 48 62.5
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 2.2e-11 71.6 55 52.7
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.9e-11 71.2 59 59.3
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 2.9e-11 71.2 56 60.7
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 3.8e-11 70.9 53 56.6
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 3.8e-11 70.9 53 56.6
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.8e-11 70.9 59 50.8
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.8e-11 70.9 59 50.8
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 3.8e-11 70.9 59 50.8
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 3.8e-11 70.9 48 64.6
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 3.8e-11 70.9 48 64.6
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 3.8e-11 70.9 48 64.6
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 6.5e-11 70.1 55 61.8
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 8.5e-11 69.7 56 53.6
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 8.5e-11 69.7 58 50.0
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 1.1e-10 69.3 56 51.8
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 1.1e-10 69.3 59 49.2
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 1.1e-10 69.3 47 63.8
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 1.1e-10 69.3 48 62.5
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 1.1e-10 69.3 48 62.5
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 1.1e-10 69.3 48 62.5
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 1.4e-10 68.9 48 58.3
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.4e-10 68.9 58 48.3
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 1.9e-10 68.6 47 59.6
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 2.5e-10 68.2 58 48.3
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 3.2e-10 67.8 47 61.7
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 3.2e-10 67.8 48 60.4
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 4.2e-10 67.4 48 58.3
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.5e-10 67.0 48 56.2
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.5e-10 67.0 48 56.2
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 7.2e-10 66.6 55 54.5
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 7.2e-10 66.6 55 54.5
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 7.2e-10 66.6 55 54.5
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 7.2e-10 66.6 55 54.5
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 7.2e-10 66.6 55 54.5
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 7.2e-10 66.6 55 54.5
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 7.2e-10 66.6 55 50.9
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 7.2e-10 66.6 55 54.5
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 9.4e-10 66.2 55 52.7
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 9.4e-10 66.2 55 52.7
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 9.4e-10 66.2 55 52.7
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 1.2e-09 65.9 55 50.9
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 1.2e-09 65.9 55 50.9
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 1.2e-09 65.9 55 50.9
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 2.1e-09 65.1 55 52.7
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 3.6e-09 64.3 56 57.1
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 4.7e-09 63.9 54 55.6
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 7.9e-09 63.2 56 55.4
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-09 63.2 56 55.4
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 1.4e-08 62.4 48 56.2
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.4e-08 62.4 48 50.0
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-08 61.6 40 70.0
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 2.6e-07 58.2 47 55.3
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 2.6e-07 58.2 45 60.0
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 5.7e-07 57.0 35 71.4
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 5.7e-07 57.0 35 71.4
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 5.7e-07 57.0 35 71.4
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 5.7e-07 57.0 35 71.4
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 5.7e-07 57.0 35 71.4
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 5.7e-07 57.0 48 54.2
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.7e-06 55.5 44 59.1
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 3.7e-06 54.3 41 58.5


User provided reference genes

Program Settings