Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.6e-137 493.8 527 100.0
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 2.6e-135 486.5 527 99.4
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 1.5e-87 327.8 496 82.7
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 9.1e-80 302.0 513 78.4
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 3.4e-79 300.1 293 74.1
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 7.7e-79 298.9 292 72.9
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 3.8e-78 296.6 292 72.9
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 5.0e-78 296.2 293 66.2
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 5.0e-78 296.2 545 78.3
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 1.1e-77 295.0 292 72.9
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.5e-77 293.9 293 80.5
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 3.2e-77 293.5 292 73.3
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 3.2e-77 293.5 526 80.4
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.2e-77 293.1 293 80.2
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 4.2e-77 293.1 292 72.6
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.2e-76 291.6 292 72.6
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.2e-76 291.6 292 72.6
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.6e-76 291.2 292 72.3
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 3.6e-76 290.0 293 79.9
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 4.7e-76 289.7 292 71.6
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 4.7e-76 289.7 526 79.7
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 4.7e-76 289.7 293 79.9
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 4.7e-76 289.7 293 73.7
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 1.8e-75 287.7 541 75.8
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.3e-75 287.3 291 71.1
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 5.1e-75 286.2 292 70.2
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 5.1e-75 286.2 529 75.0
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 8.8e-75 285.4 544 74.3
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 1.1e-74 285.0 292 70.9
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 2.6e-74 283.9 291 69.8
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 3.3e-74 283.5 292 68.8
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 3.3e-74 283.5 292 69.9
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 4.4e-74 283.1 292 71.2
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 5.7e-74 282.7 292 70.9
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 5.7e-74 282.7 532 74.6
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 1.7e-73 281.2 292 70.9
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 2.2e-73 280.8 292 69.5
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 3.7e-73 280.0 293 69.6
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 3.7e-73 280.0 292 71.2
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 4.8e-73 279.6 291 70.4
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 6.3e-73 279.3 292 70.9
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 6.3e-73 279.3 291 75.9
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 1.4e-72 278.1 292 70.2
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 1.4e-72 278.1 292 69.5
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 1.4e-72 278.1 292 70.5
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 1.8e-72 277.7 290 76.9
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 3.1e-72 276.9 292 69.9
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 3.1e-72 276.9 292 68.8
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 3.1e-72 276.9 290 70.0
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 3.1e-72 276.9 292 69.9
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 5.3e-72 276.2 292 68.2
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.5e-71 274.6 288 70.1
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 1.5e-71 274.6 292 69.5
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 2.6e-71 273.9 293 78.2
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 2.6e-71 273.9 291 70.4
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 3.5e-71 273.5 291 67.7
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 5.9e-71 272.7 292 51.0
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 5.9e-71 272.7 291 68.7
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 7.7e-71 272.3 293 70.6
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 1.0e-70 271.9 293 77.8
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 1.0e-70 271.9 293 77.8
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 1.0e-70 271.9 293 77.8
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 1.7e-70 271.2 293 71.3
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.2e-70 270.8 291 68.0
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 3.8e-70 270.0 293 70.0
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 5.0e-70 269.6 293 70.3
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 5.0e-70 269.6 291 68.0
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 1.5e-69 268.1 293 77.1
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 1.5e-69 268.1 292 68.2
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 2.5e-69 267.3 293 70.0
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 2.5e-69 267.3 292 67.1
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 3.2e-69 266.9 291 67.4
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 5.5e-69 266.2 292 67.8
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 7.2e-69 265.8 293 68.9
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 1.2e-68 265.0 291 68.0
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 1.2e-68 265.0 291 68.0
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 1.2e-68 265.0 291 68.0
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 1.6e-68 264.6 291 75.3
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 2.1e-68 264.2 291 67.4
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 2.7e-68 263.8 293 77.8
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 2.7e-68 263.8 320 48.8
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 2.7e-68 263.8 292 67.1
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 1.4e-67 261.5 293 68.3
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 1.8e-67 261.2 291 67.7
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 1.8e-67 261.2 292 66.8
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 2.3e-67 260.8 308 65.6
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 2.3e-67 260.8 291 67.7
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 2.3e-67 260.8 291 60.5
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 8.8e-67 258.8 293 67.9
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 8.8e-67 258.8 293 65.5
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 3.3e-66 256.9 292 66.8
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 1.1e-64 251.9 293 64.2
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 1.4e-64 251.5 291 65.3
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 2.0e-63 247.7 516 78.3
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 7.7e-63 245.7 292 47.6
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 4.7e-60 236.5 292 62.0
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 5.2e-59 233.0 292 56.2
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 4.8e-57 226.5 447 80.3
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.9e-46 190.7 134 68.7
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 3.8e-46 190.3 135 68.9
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 4.9e-41 173.3 135 62.2
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 6.4e-41 172.9 136 62.5
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 9.8e-34 149.1 196 70.4
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 1.2e-31 142.1 309 84.1
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 4.4e-26 123.6 99 64.6
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 2.1e-23 114.8 262 45.0
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 1.9e-21 108.2 82 64.6
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 2.5e-21 107.8 261 45.2
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 5.6e-21 106.7 266 42.5
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.1e-19 102.4 81 66.7
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 8.9e-19 99.4 78 64.1
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 7.1e-16 89.7 59 79.7
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 9.2e-16 89.4 255 31.4
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 3.0e-14 84.3 57 75.4
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 2.4e-08 64.7 45 75.6


User provided reference genes

Program Settings