Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0012_0013 Quercus lobata HOM05D001747 ORTHO05D001696 3.5e-36 154.5 79 100.0
QL12p008257 Quercus lobata HOM05D001747 ORTHO05D001696 1.6e-12 75.9 77 59.7
QL12p008276 Quercus lobata HOM05D001747 ORTHO05D001696 1.0e-11 73.2 75 58.7
arahy.Tifrunner.gnm1.ann1.1L1QBU Arachis hypogaea HOM05D001747 ORTHO05D001696 6.7e-11 70.5 85 51.8
Actinidia03411 Actinidia chinensis HOM05D001747 ORTHO05D001696 1.9e-10 68.9 74 56.8
GSVIVG01013276001 Vitis vinifera HOM05D001747 ORTHO05D001696 1.9e-10 68.9 75 54.7
CiPaw.12G056700 Carya illinoinensis HOM05D001747 ORTHO05D001696 2.5e-10 68.6 75 56.0
Hma1.2p1_1672F.1_g296870 Hydrangea macrophylla HOM05D001747 ORTHO05D001696 2.5e-10 68.6 75 54.7
Eucgr.D02141 Eucalyptus grandis HOM05D001747 ORTHO05D001696 3.3e-10 68.2 75 54.7
QL12p008322 Quercus lobata HOM05D001747 ORTHO05D001696 3.3e-10 68.2 75 58.7
Potri.003G085200 Populus trichocarpa HOM05D001747 ORTHO05D001696 4.3e-10 67.8 75 56.0
Rhsim07G0119800 Rhododendron simsii HOM05D001747 ORTHO05D001696 4.3e-10 67.8 75 54.7
MELO3C013889.2 Cucumis melo HOM05D001747 ORTHO05D001696 5.6e-10 67.4 73 56.2
Lj8C286G7 Lonicera japonica HOM05D001747 ORTHO05D001696 5.6e-10 67.4 75 54.7
Sed0006691 Sechium edule HOM05D001747 ORTHO05D001696 5.6e-10 67.4 73 56.2
Glyma.05G067700 Glycine max HOM05D001747 ORTHO05D001696 7.4e-10 67.0 75 54.7
Gohir.A08G161800 Gossypium hirsutum HOM05D001747 ORTHO05D001696 7.4e-10 67.0 75 54.7
PGR031G0447 Punica granatum HOM05D001747 ORTHO05D001696 7.4e-10 67.0 75 54.7
Dinv28893 Davidia involucrata HOM05D001747 ORTHO05D001696 9.6e-10 66.6 75 53.3
Os06g0715100 Oryza sativa ssp. japonica HOM05D001747 ORTHO05D001696 9.6e-10 66.6 73 54.8
VMungo0464G0981 Vigna mungo HOM05D001747 ORTHO05D001696 9.6e-10 66.6 75 54.7
Duzib205G0875 Durio zibethinus HOM05D001747 ORTHO05D001696 1.3e-09 66.2 75 53.3
Sabra03G0055300 Salix brachista HOM05D001747 ORTHO05D001696 1.3e-09 66.2 75 54.7
vmacro14116 Vaccinium macrocarpon HOM05D001747 ORTHO05D001696 1.3e-09 66.2 75 53.3
vmacro23242 Vaccinium macrocarpon HOM05D001747 ORTHO05D001696 1.3e-09 66.2 84 51.2
ClCG10G002080 Citrullus lanatus HOM05D001747 ORTHO05D001696 1.6e-09 65.9 73 54.8
Haze_08341 Corylus avellana HOM05D001747 ORTHO05D001696 1.6e-09 65.9 75 54.7
TPR.G17140 Trifolium pratense HOM05D001747 ORTHO05D001696 1.6e-09 65.9 75 54.7
Cfa012354 Carpinus fangiana HOM05D001747 ORTHO05D001696 2.1e-09 65.5 75 54.7
CDE02G3602 Ceratophyllum demersum HOM05D001747 ORTHO05D001696 2.1e-09 65.5 75 52.0
Dinv25158 Davidia involucrata HOM05D001747 ORTHO05D001696 2.1e-09 65.5 75 53.3
Duzib068G0774 Durio zibethinus HOM05D001747 ORTHO05D001696 2.1e-09 65.5 75 53.3
Duzib084G0192 Durio zibethinus HOM05D001747 ORTHO05D001696 2.1e-09 65.5 75 53.3
Lj8C279G4 Lonicera japonica HOM05D001747 ORTHO05D001696 2.1e-09 65.5 75 56.0
Psat4g076600 Pisum sativum HOM05D001747 ORTHO05D001696 2.1e-09 65.5 75 53.3
ATR0681G176 Amborella trichopoda HOM05D001747 ORTHO05D001696 2.8e-09 65.1 75 53.3
Aqoxy2G00343 Aquilegia oxysepala HOM05D001747 ORTHO05D001696 2.8e-09 65.1 77 50.6
CsaV3_3G002170 Cucumis sativus L. HOM05D001747 ORTHO05D001696 2.8e-09 65.1 73 53.4
Glyma.17G149800 Glycine max HOM05D001747 ORTHO05D001696 2.8e-09 65.1 75 53.3
Prupe.5G052300 Prunus persica HOM05D001747 ORTHO05D001696 2.8e-09 65.1 75 53.3
QL93p0092_0052 Quercus lobata HOM05D000005 ORTHO05D000012 2.8e-09 65.1 80 50.0
TWI81G0135 Tripterygium wilfordii HOM05D001747 ORTHO05D001696 2.8e-09 65.1 75 53.3
Ciclev10021747m.g Citrus clementina HOM05D001747 ORTHO05D001696 3.7e-09 64.7 75 53.3
Medtr4g099140 Medicago truncatula HOM05D001747 ORTHO05D001696 3.7e-09 64.7 75 52.0
PSO782G2963 Papaver somniferum HOM05D001747 ORTHO05D001696 3.7e-09 64.7 73 54.8
THA.LOC104814456 Tarenaya hassleriana HOM05D001747 ORTHO05D001696 3.7e-09 64.7 73 53.4
TWI15G0917 Tripterygium wilfordii HOM05D001747 ORTHO05D001696 3.7e-09 64.7 75 53.3
TWI15G0945 Tripterygium wilfordii HOM05D001747 ORTHO05D001696 3.7e-09 64.7 75 53.3
Ca_22027_v3 Cicer arietinum L. HOM05D001747 ORTHO05D001696 4.8e-09 64.3 75 53.3
TWI60G1277 Tripterygium wilfordii HOM05D001747 ORTHO05D001696 4.8e-09 64.3 75 53.3
CSS0009084 Camellia sinensis var. sinensis HOM05D001747 ORTHO05D001696 6.2e-09 63.9 75 52.0
Cpa.g.sc76.5 Carica papaya HOM05D001747 ORTHO05D001696 6.2e-09 63.9 75 53.3
Lalb_Chr05g0220811 Lupinus albus HOM05D001747 ORTHO05D001696 6.2e-09 63.9 75 52.0
MD11G1036500 Malus domestica HOM05D001747 ORTHO05D001696 6.2e-09 63.9 75 53.3
Hund11302 Selenicereus undatus HOM05D001747 ORTHO05D001696 6.2e-09 63.9 75 53.3
Hund14468 Selenicereus undatus HOM05D001747 ORTHO05D001696 6.2e-09 63.9 75 53.3
Thecc.03G237400 Theobroma cacao HOM05D001747 ORTHO05D001696 6.2e-09 63.9 75 52.0
EL10Ac5g12222 Beta vulgaris HOM05D001747 ORTHO05D001696 8.1e-09 63.5 75 53.3
COL.COLO4_06698 Corchorus olitorius HOM05D001747 ORTHO05D001696 8.1e-09 63.5 75 52.0
Manes.17G022842 Manihot esculenta HOM05D001747 ORTHO05D001696 8.1e-09 63.5 75 53.3
Nitab4.5_0011581g0020 Nicotiana tabacum HOM05D001747 ORTHO05D001696 8.1e-09 63.5 73 53.4
Peaxi162Scf00715g00120 Petunia axillaris HOM05D001747 ORTHO05D001696 8.1e-09 63.5 73 53.4
Phvul.003G226600 Phaseolus vulgaris HOM05D001747 ORTHO05D001696 8.1e-09 63.5 75 52.0
Sc22g0001190 Simmondsia chinensis HOM05D001747 ORTHO05D001696 8.1e-09 63.5 75 53.3
CANSAT21G1966 Cannabis sativa HOM05D001747 ORTHO05D001696 1.1e-08 63.2 73 53.4
Gohir.D08G181800 Gossypium hirsutum HOM05D001747 ORTHO05D001696 1.1e-08 63.2 75 52.0
Gorai.004G190700 Gossypium raimondii HOM05D001747 ORTHO05D001696 1.1e-08 63.2 75 52.0
HanXRQChr17g0535691 Helianthus annuus HOM05D001747 ORTHO05D001696 1.1e-08 63.2 75 52.0
Sabra01G0119200 Salix brachista HOM05D001747 ORTHO05D001696 1.1e-08 63.2 74 52.7
Atru.chr9.1151 Acer truncatum HOM05D001747 ORTHO05D001696 1.4e-08 62.8 75 50.7
ECA246G2157 Erigeron canadensis HOM05D001747 ORTHO05D001696 1.4e-08 62.8 75 50.7
Oeu054288.1 Olea europaea HOM05D001747 ORTHO05D001696 1.4e-08 62.8 73 53.4
PSO063G6707 Papaver somniferum HOM05D001747 ORTHO05D001696 1.4e-08 62.8 73 53.4
THA.LOC104807941 Tarenaya hassleriana HOM05D001747 ORTHO05D001696 1.4e-08 62.8 73 53.4
TAR375G0178 Trochodendron aralioides HOM05D001747 ORTHO05D001696 1.4e-08 62.8 75 50.7
Actinidia25925 Actinidia chinensis HOM05D001747 ORTHO05D001696 1.8e-08 62.4 75 50.7
Lsat_1_v5_gn_3_15780 Lactuca sativa HOM05D001747 ORTHO05D001696 1.8e-08 62.4 75 50.7
Lalb_Chr09g0324041 Lupinus albus HOM05D001747 ORTHO05D001696 1.8e-08 62.4 75 52.0
Solyc08g077550.3 Solanum lycopersicum HOM05D001747 ORTHO05D001696 1.8e-08 62.4 73 52.1
Sopen08g026120 Solanum pennellii HOM05D001747 ORTHO05D001696 1.8e-08 62.4 73 52.1
PGSC0003DMG400001854 Solanum tuberosum HOM05D001747 ORTHO05D001696 1.8e-08 62.4 73 52.1
Ah.12g053840 Amaranthus hybridus HOM05D001747 ORTHO05D001696 2.4e-08 62.0 75 52.0
CAN.G1445.12 Capsicum annuum HOM05D001747 ORTHO05D001696 2.4e-08 62.0 73 52.1
Potri.001G149200 Populus trichocarpa HOM05D001747 ORTHO05D001696 2.4e-08 62.0 75 50.7
MSTRG.1956 Avicennia marina HOM05D001747 ORTHO05D001696 3.1e-08 61.6 73 53.4
Cc08_g01500 Coffea canephora HOM05D001747 ORTHO05D001696 3.1e-08 61.6 75 50.7
Nn1g00712 Nelumbo nucifera HOM05D001747 ORTHO05D001696 4.0e-08 61.2 75 50.7
unitig_52.g17214 Utricularia gibba HOM05D001747 ORTHO05D001696 4.0e-08 61.2 73 52.1
Lalb_Chr16g0386331 Lupinus albus HOM05D001747 ORTHO05D001696 5.3e-08 60.8 75 48.0
MD04G1053700 Malus domestica HOM05D001747 ORTHO05D001696 5.3e-08 60.8 75 50.7
HPP92_025659 Vanilla planifolia HOM05D001747 ORTHO05D001696 5.3e-08 60.8 75 50.7
FvH4_5g20760 Fragaria vesca HOM05D001747 ORTHO05D001696 6.9e-08 60.5 75 50.7
FAN08G0775 Fragaria x ananassa HOM05D001747 ORTHO05D001696 6.9e-08 60.5 75 50.7
FAN13G0395 Fragaria x ananassa HOM05D001747 ORTHO05D001696 6.9e-08 60.5 75 50.7
Hma1.2p1_1510F.1_g287860 Hydrangea macrophylla HOM05D001747 ORTHO05D001696 6.9e-08 60.5 75 49.3
RcHm_v2.0_Chr7g0206541 Rosa chinensis HOM05D001747 ORTHO05D001696 6.9e-08 60.5 75 50.7
MSTRG.13767 Avicennia marina HOM05D001747 ORTHO05D001696 9.0e-08 60.1 73 52.1
FAN18G2388 Fragaria x ananassa HOM05D001747 ORTHO05D001696 9.0e-08 60.1 75 49.3
CiPaw.11G084800 Carya illinoinensis HOM05D001747 ORTHO05D001696 1.2e-07 59.7 75 50.7
Migut.O00359 Erythranthe guttata HOM05D001747 ORTHO05D001696 1.2e-07 59.7 73 52.1
Lj4g0026409 Lotus japonicus HOM05D001747 ORTHO05D001696 1.2e-07 59.7 75 49.3
MBI04_g20747_MAGBIO Magnolia biondii HOM05D001747 ORTHO05D001696 1.2e-07 59.7 75 49.3
arahy.Tifrunner.gnm1.ann1.0KII0J Arachis hypogaea HOM05D001747 ORTHO05D001696 1.5e-07 59.3 75 46.7
arahy.Tifrunner.gnm1.ann1.Z4VNZV Arachis hypogaea HOM05D001747 ORTHO05D001696 1.5e-07 59.3 75 46.7
Gohir.D03G168900 Gossypium hirsutum HOM05D001747 ORTHO05D001696 1.5e-07 59.3 73 50.7
Aa31LG9G15180 Aethionema arabicum HOM05D001747 ORTHO05D001696 2.0e-07 58.9 73 53.4
AL4G31200 Arabidopsis lyrata HOM05D001747 ORTHO05D001696 2.0e-07 58.9 73 50.7
AT2G35190 Arabidopsis thaliana HOM05D001747 ORTHO05D001696 2.0e-07 58.9 73 50.7
Carub.0004s1688 Capsella rubella HOM05D001747 ORTHO05D001696 2.0e-07 58.9 73 50.7
CARHR129350 Cardamine hirsuta HOM05D001747 ORTHO05D001696 2.0e-07 58.9 73 50.7
Thhalv10017097m.g Eutrema salsugineum HOM05D001747 ORTHO05D001696 2.0e-07 58.9 73 50.7
Lj2A252G53 Lonicera japonica HOM05D001747 ORTHO05D001696 2.0e-07 58.9 75 49.3
AUR62007197 Chenopodium quinoa HOM05D001747 ORTHO05D001696 2.6e-07 58.5 75 49.3
AUR62018805 Chenopodium quinoa HOM05D001747 ORTHO05D001696 2.6e-07 58.5 75 49.3
Gohir.A03G003500 Gossypium hirsutum HOM05D001747 ORTHO05D001696 2.6e-07 58.5 73 49.3
QL12p008078 Quercus lobata HOM05D001747 ORTHO05D337732 2.6e-07 58.5 34 79.4
FAN04G1571 Fragaria x ananassa HOM05D001747 ORTHO05D001696 3.4e-07 58.2 75 49.3
BcaC02g07732 Brassica carinata HOM05D001747 ORTHO05D001696 4.5e-07 57.8 73 49.3
BolC4t27898H Brassica oleracea HOM05D001747 ORTHO05D001696 4.5e-07 57.8 73 49.3
Nn6g33726 Nelumbo nucifera HOM05D001747 ORTHO05D001696 4.5e-07 57.8 75 48.0
BcaB06g28808 Brassica carinata HOM05D001747 ORTHO05D001696 5.8e-07 57.4 73 49.3
Oeu028052.1 Olea europaea HOM05D001747 ORTHO05D001696 7.6e-07 57.0 73 50.7
TAR633G0176 Trochodendron aralioides HOM05D000118 ORTHO05D004476 7.6e-07 57.0 75 46.7
arahy.Tifrunner.gnm1.ann1.TK66KG Arachis hypogaea HOM05D001747 ORTHO05D001696 9.9e-07 56.6 66 54.5
Gorai.003G179000 Gossypium raimondii HOM05D001747 ORTHO05D001696 9.9e-07 56.6 73 49.3
Sp4g17410 Schrenkiella parvula HOM05D001747 ORTHO05D001696 1.3e-06 56.2 73 49.3
AagrBONN_evm.TU.Sc2ySwM_228.2838 Anthoceros agrestis HOM05D001747 ORTHO05D001696 1.7e-06 55.8 77 44.2
A05p10560 Brassica napus HOM05D001747 ORTHO05D001696 1.7e-06 55.8 73 47.9
BolC4t22954H Brassica oleracea HOM05D001747 ORTHO05D001696 1.7e-06 55.8 73 47.9
BraA05t19994Z Brassica rapa HOM05D001747 ORTHO05D001696 1.7e-06 55.8 73 47.9
BcaC02g11589 Brassica carinata HOM05D001747 ORTHO05D001696 2.9e-06 55.1 73 47.9
A04p26750 Brassica napus HOM05D001747 ORTHO05D001696 2.9e-06 55.1 73 47.9
C04p13640 Brassica napus HOM05D001747 ORTHO05D001696 2.9e-06 55.1 73 47.9
C04p64150 Brassica napus HOM05D001747 ORTHO05D001696 2.9e-06 55.1 73 47.9
BraA04t18179Z Brassica rapa HOM05D001747 ORTHO05D001696 2.9e-06 55.1 73 47.9
DCAR_008314 Daucus carota HOM05D001747 ORTHO05D001696 6.4e-06 53.9 75 42.7
MBI07_g07340_MAGBIO Magnolia biondii HOM05D001747 ORTHO05D001696 6.4e-06 53.9 88 44.3
Mapoly0031s0037 Marchantia polymorpha HOM05D001747 ORTHO05D001696 6.4e-06 53.9 75 44.0
EL10Ac3g06261 Beta vulgaris HOM05D001747 ORTHO05D001696 8.4e-06 53.5 77 44.2
TAR628G0347 Trochodendron aralioides HOM05D001747 ORTHO05D001696 8.4e-06 53.5 75 44.0


User provided reference genes

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