Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 0.0e+00 1334.3 648 100.0
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 0.0e+00 1199.1 649 88.9
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 0.0e+00 1154.0 650 84.9
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 0.0e+00 1148.7 649 84.0
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 0.0e+00 1145.6 650 86.3
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 0.0e+00 1143.3 649 84.0
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 0.0e+00 1141.3 649 84.0
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 0.0e+00 1138.3 654 85.3
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 0.0e+00 1137.9 649 83.7
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 0.0e+00 1132.1 649 83.1
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 0.0e+00 1132.1 649 83.2
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 0.0e+00 1130.9 650 83.4
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 0.0e+00 1128.6 649 82.1
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 0.0e+00 1127.9 651 83.4
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 0.0e+00 1127.5 650 83.4
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 0.0e+00 1125.5 603 89.7
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1122.1 650 83.1
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1120.1 653 84.1
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 0.0e+00 1119.8 650 82.6
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 0.0e+00 1119.4 649 83.5
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 0.0e+00 1119.0 650 82.0
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 0.0e+00 1118.2 655 82.9
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 0.0e+00 1117.1 649 82.4
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 0.0e+00 1116.3 649 82.6
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 0.0e+00 1113.2 649 83.4
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 0.0e+00 1112.1 649 83.5
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 0.0e+00 1111.7 650 82.2
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 0.0e+00 1110.5 650 82.3
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 0.0e+00 1105.1 650 83.4
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 0.0e+00 1100.5 653 81.5
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 0.0e+00 1100.1 652 81.3
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1099.7 650 82.9
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 0.0e+00 1097.8 654 81.3
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 0.0e+00 1094.7 653 82.7
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 0.0e+00 1088.2 703 78.1
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 0.0e+00 1087.0 675 78.8
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 0.0e+00 1086.6 650 81.7
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 0.0e+00 1086.6 650 80.5
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 0.0e+00 1085.9 649 81.0
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 0.0e+00 1078.5 650 78.6
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 0.0e+00 1076.2 650 80.8
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 1.3e-311 1072.4 651 78.6
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.2e-311 1071.6 650 79.2
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 4.0e-311 1070.8 653 79.6
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.0e-311 1070.8 663 78.6
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 5.3e-311 1070.5 650 78.5
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 1.5e-310 1068.9 657 79.5
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 2.0e-310 1068.5 650 78.5
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 2.0e-310 1068.5 658 79.0
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 5.7e-310 1067.0 651 78.2
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 5.7e-310 1067.0 678 78.2
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 5.7e-310 1067.0 657 79.3
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 7.4e-310 1066.6 658 78.4
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 9.8e-310 1066.2 650 78.3
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 8.3e-309 1063.1 650 77.5
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 8.3e-309 1063.1 650 77.5
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 8.3e-309 1063.1 652 79.1
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 8.3e-309 1063.1 650 78.0
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 8.3e-309 1063.1 654 78.3
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 8.3e-309 1063.1 654 78.3
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.2e-307 1059.3 668 77.2
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.6e-307 1058.9 650 77.2
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 3.5e-307 1057.7 650 77.8
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 4.5e-307 1057.4 654 78.0
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 5.9e-307 1057.0 650 77.2
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 7.7e-307 1056.6 657 78.8
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 1.0e-306 1056.2 654 78.9
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.3e-306 1055.8 672 76.9
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 1.7e-306 1055.4 650 77.7
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 8.5e-306 1053.1 656 79.0
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.1e-305 1052.7 650 77.5
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 1.5e-305 1052.4 677 75.2
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.5e-305 1052.4 649 78.9
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 1.5e-305 1052.4 655 78.8
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.0e-303 1046.2 650 77.1
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 2.3e-303 1045.0 705 72.9
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 3.4e-302 1041.2 650 76.9
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 6.3e-301 1036.9 648 77.9
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 2.4e-300 1035.0 654 77.8
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 2.4e-300 1035.0 679 73.9
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 7.0e-300 1033.5 596 84.2
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 2.7e-299 1031.6 634 80.3
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 7.7e-299 1030.0 651 77.6
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.5e-297 1025.8 660 75.3
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 7.3e-297 1023.5 679 74.5
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 2.3e-295 1018.5 700 72.6
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 1.5e-294 1015.8 653 77.3
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 5.7e-294 1013.8 592 82.8
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.8e-292 1008.8 665 72.9
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.6e-291 1005.7 548 87.8
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.2e-288 996.1 680 71.9
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 5.2e-287 990.7 659 73.1
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 1.5e-286 989.2 649 73.3
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 2.2e-285 985.3 658 72.9
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.1e-284 983.0 674 72.0
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 9.2e-284 979.9 665 73.8
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 8.1e-280 966.8 659 70.4
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 8.1e-280 966.8 659 70.7
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.4e-276 956.1 633 75.4
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 3.2e-276 954.9 667 69.3
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 3.5e-275 951.4 667 68.7
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 1.5e-273 946.0 565 79.8
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 1.1e-271 939.9 565 79.6
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 2.6e-270 935.3 695 68.1
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 5.8e-270 934.1 657 70.5
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.4e-268 928.7 667 68.1
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 1.2e-267 926.4 529 83.7
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 8.6e-266 920.2 801 62.2
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 3.3e-265 918.3 654 69.7
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 3.1e-263 911.8 665 67.2
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.3e-261 906.4 667 66.7
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 8.1e-256 887.1 499 83.6
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 4.0e-255 884.8 665 66.2
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 2.9e-253 878.6 594 75.6
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 1.4e-252 876.3 867 56.5
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 7.1e-244 847.4 475 85.3
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.8e-242 842.8 650 63.2
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 1.6e-235 819.7 649 62.9
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 4.1e-231 805.1 529 76.4
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 8.7e-226 787.3 667 60.4
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 1.2e-201 707.2 660 56.7
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.7e-192 676.8 499 68.7
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 4.0e-186 655.6 706 48.9
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 6.3e-184 648.3 650 54.3
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.1e-183 647.5 389 80.2
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.5e-182 642.5 657 54.3
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 1.0e-181 641.0 664 51.2
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.8e-178 630.2 635 51.5
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.4e-175 620.5 508 61.4
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 2.4e-175 619.8 336 88.7
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 1.1e-159 567.8 669 47.5
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 8.9e-154 548.1 336 79.5
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.6e-153 546.6 368 73.4
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 4.7e-147 525.8 320 78.8
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.0e-146 522.7 654 47.1
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.1e-132 478.0 275 82.9
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.2e-128 463.8 649 43.6
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 3.9e-125 453.0 272 80.9
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 5.1e-125 452.6 341 68.6
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 9.3e-119 431.8 650 41.5
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 3.4e-113 413.3 390 58.7
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 2.2e-112 410.6 423 55.8
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 3.1e-106 390.2 232 79.7
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 3.3e-84 317.0 431 42.0
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 5.0e-80 303.1 505 39.6
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 5.0e-80 303.1 304 54.6
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 6.8e-77 292.7 492 37.6
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 1.2e-73 282.0 655 31.1
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 2.3e-72 277.7 228 61.0
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 4.2e-71 273.5 232 60.3
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.3e-67 259.6 201 63.2
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 7.0e-66 256.1 562 36.5
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.0e-60 238.0 271 48.0
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 8.9e-45 186.0 139 72.7
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.3e-40 172.2 300 40.7
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.3e-35 155.6 112 68.8
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 2.7e-33 147.9 108 67.6
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 1.7e-32 145.2 228 42.5
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 5.8e-28 130.2 79 78.5
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 8.4e-27 126.3 125 54.4
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 2.4e-26 124.8 65 87.7
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 3.9e-24 117.5 127 48.8
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 2.1e-22 111.7 58 81.0
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 2.2e-19 101.7 69 65.2
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 3.8e-19 100.9 149 39.6
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 3.2e-18 97.8 60 70.0
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 4.6e-17 94.0 92 55.4
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 7.9e-17 93.2 66 72.7
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.3e-16 91.7 50 86.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 5.1e-16 90.5 79 58.2
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 8.7e-16 89.7 53 79.2
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 3.3e-15 87.8 46 87.0
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 2.4e-13 81.6 50 74.0
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 9.0e-13 79.7 78 53.8
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 9.9e-12 76.3 64 60.9
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 1.3e-11 75.9 45 86.7
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 3.2e-10 71.2 48 64.6
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 7.1e-10 70.1 42 73.8
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 2.1e-09 68.6 74 50.0
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 4.6e-09 67.4 37 78.4
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 6.7e-08 63.5 51 66.7
Ah.14g080820 Amaranthus hybridus HOM05D000639 ORTHO05D005966 6.2e-06 57.0 119 33.6
SMO118G0255 Selaginella moellendorffii HOM05D000639 ORTHO05D006731 6.2e-06 57.0 181 27.1


User provided reference genes

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