Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 0.0e+00 1761.1 919 100.0
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 0.0e+00 1736.1 941 95.0
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 0.0e+00 1362.1 944 74.9
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1333.2 946 74.8
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 0.0e+00 1172.9 970 66.6
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 0.0e+00 1170.2 958 66.1
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 0.0e+00 1121.7 968 63.1
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 0.0e+00 1084.3 968 62.1
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 0.0e+00 1078.2 954 61.2
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 2.1e-310 1068.9 978 61.3
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 3.1e-309 1065.1 954 62.2
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 5.3e-309 1064.3 975 61.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 9.0e-309 1063.5 936 61.4
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 3.4e-308 1061.6 938 62.4
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 1.9e-306 1055.8 930 60.2
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.7e-305 1052.0 930 60.1
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.6e-302 1042.7 930 59.9
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 3.8e-299 1031.6 936 60.0
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 5.5e-298 1027.7 969 59.1
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 8.7e-296 1020.4 963 58.2
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 2.5e-295 1018.8 1038 57.3
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 4.3e-295 1018.1 961 59.0
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 5.6e-295 1017.7 970 58.5
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-293 1013.4 864 64.5
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 2.6e-292 1008.8 947 58.9
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 2.9e-291 1005.4 933 58.8
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.8e-286 988.0 1014 56.1
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.4e-285 985.7 1014 56.1
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 6.9e-285 984.2 934 58.9
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.0e-283 980.3 1007 56.4
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.3e-283 979.9 868 63.2
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 4.2e-282 974.9 961 57.5
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 5.5e-282 974.5 960 57.2
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.6e-281 971.8 1014 55.4
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.4e-277 959.1 1037 54.4
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.4e-274 949.9 944 56.4
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 5.5e-274 948.0 980 55.9
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 6.1e-273 944.5 898 58.5
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 7.4e-271 937.6 966 56.2
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 1.3e-270 936.8 830 60.7
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 3.7e-270 935.3 863 61.3
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 1.0e-267 927.2 938 55.7
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.9e-267 925.6 935 55.8
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 6.5e-267 924.5 997 53.9
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.4e-266 923.3 974 55.4
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 4.2e-266 921.8 947 55.5
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 7.2e-266 921.0 935 56.1
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 1.6e-265 919.8 958 55.7
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 8.5e-259 897.5 923 54.7
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.5e-258 896.0 953 53.4
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 2.5e-258 896.0 953 55.3
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 4.7e-257 891.7 923 55.3
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.4e-256 890.2 782 62.0
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.7e-252 875.9 1081 49.0
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 3.0e-248 862.4 955 51.6
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 2.4e-245 852.8 975 50.1
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 3.1e-245 852.4 992 51.2
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 3.5e-244 849.0 954 51.7
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 5.0e-243 845.1 747 61.6
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.9e-242 843.2 937 53.1
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 9.5e-242 840.9 981 50.3
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.6e-241 840.1 923 54.4
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.4e-240 837.0 919 51.9
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.4e-240 837.0 919 51.6
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 6.8e-240 834.7 924 52.6
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.9e-234 816.6 913 50.9
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 1.9e-234 816.6 982 48.9
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.6e-233 813.5 936 50.1
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 5.7e-231 805.1 934 51.2
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 4.9e-230 802.0 813 54.7
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 9.5e-226 787.7 925 49.9
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.8e-225 786.2 1023 49.5
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 9.8e-223 777.7 565 74.5
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 2.0e-220 770.0 996 47.9
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 4.6e-220 768.8 968 47.8
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.7e-219 766.9 798 55.0
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 4.9e-214 748.8 927 46.3
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 1.0e-211 741.1 919 48.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 9.9e-207 724.5 931 46.2
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 1.9e-202 710.3 581 65.2
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 3.1e-200 703.0 1040 42.9
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 5.2e-200 702.2 900 47.2
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 3.4e-199 699.5 947 45.8
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 2.2e-198 696.8 939 44.1
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 2.9e-198 696.4 911 46.4
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 6.4e-198 695.3 918 44.1
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 7.1e-197 691.8 904 47.3
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 9.3e-197 691.4 914 46.7
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 2.3e-195 686.8 910 46.5
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 8.7e-195 684.9 1001 43.2
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-191 674.5 564 64.7
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 7.6e-191 671.8 599 61.6
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 2.9e-190 669.8 1001 42.4
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 7.1e-189 665.2 913 45.3
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 2.5e-186 656.8 1004 43.6
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 4.3e-186 656.0 907 45.4
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 5.6e-186 655.6 953 44.7
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 1.6e-185 654.1 926 44.9
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 6.2e-185 652.1 927 44.8
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.4e-184 651.0 929 44.6
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 1.4e-184 651.0 937 44.8
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 3.1e-184 649.8 926 44.8
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 4.0e-184 649.4 927 44.2
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 3.8e-182 642.9 950 43.6
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 3.2e-181 639.8 939 44.2
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 5.5e-181 639.0 992 41.8
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.6e-180 637.5 788 50.1
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 2.1e-180 637.1 938 43.8
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 7.6e-175 618.6 937 43.1
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-170 604.4 604 56.5
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.2e-157 559.7 904 40.9
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 8.0e-148 528.9 769 43.7
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 6.3e-145 519.2 485 58.6
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 3.5e-143 513.5 384 71.4
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 8.5e-142 508.8 603 49.6
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 8.5e-142 508.8 920 37.7
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 3.3e-138 496.9 762 41.7
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 4.8e-137 493.0 796 41.3
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 3.1e-136 490.3 1027 34.4
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.5e-133 481.5 763 41.0
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 6.8e-131 472.6 563 48.8
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 3.4e-130 470.3 751 40.9
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.4e-128 464.9 525 49.5
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 7.0e-128 462.6 790 40.3
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 7.7e-127 459.1 413 62.0
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 1.1e-125 455.3 537 49.3
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 1.2e-119 435.3 563 47.1
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 5.6e-117 426.4 1004 33.2
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 6.1e-116 422.9 1006 32.4
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.5e-109 401.7 573 44.7
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 2.2e-105 387.9 336 62.5
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 2.3e-99 367.9 592 41.2
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-96 358.6 1060 28.6
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.6e-92 344.0 286 61.9
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 7.6e-90 336.3 581 43.0
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 1.3e-89 335.5 253 68.4
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 6.0e-87 326.6 1025 29.5
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.0e-86 325.9 269 66.2
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 1.5e-74 285.4 477 38.2
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 5.4e-72 276.9 346 47.7
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.0e-70 272.7 237 62.0
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.9e-67 260.0 682 32.7
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-66 259.2 371 43.4
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.5e-66 258.8 368 43.8
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 9.3e-56 223.0 226 60.6
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 6.0e-55 220.3 186 65.1
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 7.4e-53 213.4 397 37.8
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 8.2e-52 209.9 229 54.1
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 9.0e-51 206.5 379 39.1
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.3e-49 202.6 344 39.0
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.8e-46 192.2 207 52.2
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.4e-43 182.6 147 59.9
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 1.3e-41 176.0 101 95.0
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 2.2e-41 175.3 92 98.9
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.1e-40 172.9 284 44.0
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.1e-40 172.9 182 54.4
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 7.4e-37 160.2 133 67.7
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 4.5e-34 151.0 328 33.2
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 3.3e-29 134.8 178 43.3
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 2.2e-28 132.1 194 43.8
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.9e-25 121.7 262 35.5
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 5.5e-24 117.5 179 39.7
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.2e-22 110.9 191 40.3
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 9.7e-21 106.7 125 47.2
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 9.7e-21 106.7 83 66.3
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.8e-20 105.1 195 34.9
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.8e-20 105.1 117 52.1
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 2.7e-18 98.6 99 52.5
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.8e-17 94.7 158 37.3
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 3.6e-15 88.2 198 33.8
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 1.4e-14 86.3 95 44.2
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 3.0e-14 85.1 184 33.7
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 1.5e-13 82.8 159 34.0
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.1e-11 76.6 72 50.0
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 4.1e-11 74.7 66 50.0
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 1.2e-10 73.2 60 51.7
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 1.3e-09 69.7 108 41.7
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 2.3e-09 68.9 182 34.1
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 5.0e-09 67.8 101 45.5
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 1.1e-08 66.6 96 41.7
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 2.8e-07 62.0 94 34.0
MELO3C029664.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.0e-06 58.2 44 63.6


User provided reference genes

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