Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p043385 Quercus lobata HOM05D001065 ORTHO05D033638 6.6e-108 394.4 260 100.0
QL11p043340 Quercus lobata HOM05D001065 ORTHO05D002020 1.4e-62 243.8 183 77.0
Cfa005013 Carpinus fangiana HOM05D001065 ORTHO05D002020 4.1e-41 172.6 185 60.5
CiPaw.06G136200 Carya illinoinensis HOM05D001065 ORTHO05D002020 2.0e-40 170.2 179 62.0
Gohir.D04G164200 Gossypium hirsutum HOM05D001065 ORTHO05D002020 2.9e-39 166.4 184 55.4
Gorai.012G152400 Gossypium raimondii HOM05D001065 ORTHO05D002020 2.9e-39 166.4 184 55.4
Haze_02373 Corylus avellana HOM05D001065 ORTHO05D002020 1.9e-38 163.7 174 59.8
Duzib052G1110 Durio zibethinus HOM05D001065 ORTHO05D002020 2.1e-37 160.2 184 56.0
Thecc.02G086600 Theobroma cacao HOM05D001065 ORTHO05D002020 2.1e-37 160.2 184 56.0
FAN20G0301 Fragaria x ananassa HOM05D001065 ORTHO05D002020 2.7e-37 159.8 192 52.6
Gohir.A03G193700 Gossypium hirsutum HOM05D001065 ORTHO05D002020 2.7e-37 159.8 184 54.9
COL.COLO4_25916 Corchorus olitorius HOM05D001065 ORTHO05D002020 4.7e-37 159.1 184 56.0
FvH4_2g08620 Fragaria vesca HOM05D001065 ORTHO05D002020 8.0e-37 158.3 192 52.1
Gohir.D02G214800 Gossypium hirsutum HOM05D001065 ORTHO05D002020 1.4e-36 157.5 184 54.9
Gorai.005G242600 Gossypium raimondii HOM05D001065 ORTHO05D002020 1.4e-36 157.5 184 54.9
Duzib132G0011 Durio zibethinus HOM05D001065 ORTHO05D002020 5.2e-36 155.6 166 59.0
FAN24G1495 Fragaria x ananassa HOM05D001065 ORTHO05D002020 6.8e-36 155.2 192 51.6
FAN27G2579 Fragaria x ananassa HOM05D001065 ORTHO05D002020 6.8e-36 155.2 192 51.6
FAN15G0383 Fragaria x ananassa HOM05D001065 ORTHO05D002020 1.2e-35 154.5 186 52.7
Manes.15G164300 Manihot esculenta HOM05D001065 ORTHO05D002020 2.0e-35 153.7 184 51.1
Prupe.8G098500 Prunus persica HOM05D001065 ORTHO05D002020 1.7e-34 150.6 185 54.1
Atru.chr5.2998 Acer truncatum HOM05D001065 ORTHO05D002020 2.2e-34 150.2 265 51.7
MD05G1067900 Malus domestica HOM05D001065 ORTHO05D002020 6.3e-34 148.7 183 51.4
Gohir.A04G122200 Gossypium hirsutum HOM05D001065 ORTHO05D002020 1.8e-33 147.1 169 54.4
FAN24G1858 Fragaria x ananassa HOM05D001065 ORTHO05D002020 7.0e-33 145.2 192 50.0
Sabra04G0101700 Salix brachista HOM05D001065 ORTHO05D002020 9.1e-33 144.8 178 50.6
RcHm_v2.0_Chr6g0263951 Rosa chinensis HOM05D001065 ORTHO05D002020 2.7e-32 143.3 111 71.2
MD10G1077800 Malus domestica HOM05D001065 ORTHO05D002020 2.3e-31 140.2 185 50.3
Potri.004G153300 Populus trichocarpa HOM05D001065 ORTHO05D002020 1.1e-30 137.9 181 51.4
TAR628G1043 Trochodendron aralioides HOM05D001065 ORTHO05D002020 1.2e-29 134.4 179 47.5
arahy.Tifrunner.gnm1.ann1.VE4HHH Arachis hypogaea HOM05D001065 ORTHO05D002020 2.8e-29 133.3 183 46.4
Lj3g0022498 Lotus japonicus HOM05D001065 ORTHO05D002020 3.6e-29 132.9 179 48.6
arahy.Tifrunner.gnm1.ann1.3Z4KTG Arachis hypogaea HOM05D001065 ORTHO05D002020 1.8e-28 130.6 183 45.9
Medtr4g069830 Medicago truncatula HOM05D001065 ORTHO05D002020 2.0e-27 127.1 181 46.4
Glyma.12G044200 Glycine max HOM05D001065 ORTHO05D002020 3.4e-27 126.3 181 45.3
Lalb_Chr03g0025761 Lupinus albus HOM05D001065 ORTHO05D002020 3.4e-27 126.3 181 46.4
Ca_20862_v3 Cicer arietinum L. HOM05D001065 ORTHO05D002020 5.7e-27 125.6 184 44.6
VMungo1127G1908 Vigna mungo HOM05D001065 ORTHO05D002020 5.7e-27 125.6 179 45.3
Phvul.011G046200 Phaseolus vulgaris HOM05D001065 ORTHO05D002020 7.5e-27 125.2 179 45.3
GSVIVG01031951001 Vitis vinifera HOM05D001065 ORTHO05D002020 2.8e-26 123.2 187 46.5
Ciclev10027804m.g Citrus clementina HOM05D001065 ORTHO05D002020 1.8e-25 120.6 179 49.2
Psat7g141080 Pisum sativum HOM05D001065 ORTHO05D002020 2.4e-25 120.2 188 44.7
ClCG02G005100 Citrullus lanatus HOM05D001065 ORTHO05D002020 4.1e-25 119.4 188 45.2
MELO3C012530.2 Cucumis melo HOM05D001065 ORTHO05D002020 5.4e-25 119.0 187 44.4
CSS0030616 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 1.2e-24 117.9 185 42.7
Potri.009G114900 Populus trichocarpa HOM05D001065 ORTHO05D002020 2.0e-24 117.1 179 45.8
Sed0027635 Sechium edule HOM05D001065 ORTHO05D002020 4.5e-24 115.9 188 45.2
Eucgr.I01261 Eucalyptus grandis HOM05D001065 ORTHO05D002020 1.0e-23 114.8 175 45.7
Glyma.11G118900 Glycine max HOM05D001065 ORTHO05D002020 1.3e-23 114.4 181 42.5
PGR142G3772 Punica granatum HOM05D001065 ORTHO05D002020 1.7e-23 114.0 162 45.1
Aa31LG2G16120 Aethionema arabicum HOM05D001065 ORTHO05D002020 4.3e-22 109.4 106 59.4
Actinidia00507 Actinidia chinensis HOM05D001065 ORTHO05D002020 7.3e-22 108.6 112 54.5
Lj9C369G8 Lonicera japonica HOM05D001065 ORTHO05D002020 7.3e-22 108.6 177 45.8
AT4G34430 Arabidopsis thaliana HOM05D001065 ORTHO05D002020 1.6e-21 107.5 106 59.4
Sp7g32230 Schrenkiella parvula HOM05D001065 ORTHO05D002020 3.6e-21 106.3 111 56.8
Thhalv10024321m.g Eutrema salsugineum HOM05D001065 ORTHO05D002020 4.7e-21 105.9 109 56.9
Oeu014346.1 Olea europaea HOM05D001065 ORTHO05D002020 6.1e-21 105.5 108 58.3
Lalb_Chr23g0265411 Lupinus albus HOM05D001065 ORTHO05D002020 8.0e-21 105.1 182 42.9
CARHR242310 Cardamine hirsuta HOM05D001065 ORTHO05D002020 1.4e-20 104.4 154 45.5
BolC1t00421H Brassica oleracea HOM05D001453 ORTHO05D002020 1.8e-20 104.0 89 62.9
AUR62011336 Chenopodium quinoa HOM05D001065 ORTHO05D002020 1.8e-20 104.0 189 40.7
C01p04330 Brassica napus HOM05D001453 ORTHO05D002020 3.0e-20 103.2 87 64.4
C03p85780 Brassica napus HOM05D001065 ORTHO05D002020 8.9e-20 101.7 110 55.5
BolC3t20869H Brassica oleracea HOM05D001065 ORTHO05D002020 8.9e-20 101.7 110 55.5
A01p04010 Brassica napus HOM05D001453 ORTHO05D002020 1.2e-19 101.3 87 63.2
BraA01t00389Z Brassica rapa HOM05D001065 ORTHO05D002020 1.2e-19 101.3 87 63.2
AUR62016724 Chenopodium quinoa HOM05D001065 ORTHO05D002020 2.0e-19 100.5 188 39.9
BraA08t33648Z Brassica rapa HOM05D001065 ORTHO05D002020 2.6e-19 100.1 110 55.5
DCAR_028991 Daucus carota HOM05D001065 ORTHO05D002020 2.6e-19 100.1 108 53.7
AL7G16800 Arabidopsis lyrata HOM05D001065 ORTHO05D002020 3.4e-19 99.8 179 42.5
MSTRG.16799 Avicennia marina HOM05D001065 ORTHO05D002020 3.4e-19 99.8 110 55.5
Oeu015979.1 Olea europaea HOM05D001065 ORTHO05D002020 3.4e-19 99.8 108 53.7
EL10Ac9g21737 Beta vulgaris HOM05D001065 ORTHO05D002020 5.8e-19 99.0 169 40.8
Carub.0007s0587 Capsella rubella HOM05D001065 ORTHO05D002020 1.3e-18 97.8 180 43.3
THA.LOC104804355 Tarenaya hassleriana HOM05D001065 ORTHO05D002020 1.3e-18 97.8 172 43.6
Migut.B00247 Erythranthe guttata HOM05D001065 ORTHO05D002020 1.7e-18 97.4 183 41.5
Aqoxy5G01664 Aquilegia oxysepala HOM05D001065 ORTHO05D002020 6.4e-18 95.5 177 41.8
A08p16830 Brassica napus HOM05D001065 ORTHO05D002020 8.3e-18 95.1 174 40.8
SalBow6G5925 Salvia bowleyana HOM05D001065 ORTHO05D002020 1.1e-17 94.7 111 51.4
SalBow6G6018 Salvia bowleyana HOM05D001065 ORTHO05D002020 1.1e-17 94.7 111 51.4
Dinv23536 Davidia involucrata HOM05D001065 ORTHO05D002020 1.4e-17 94.4 164 41.5
A01p02520 Brassica napus HOM05D001065 ORTHO05D033638 3.2e-17 93.2 99 57.6
Nn5g29562 Nelumbo nucifera HOM05D001065 ORTHO05D002020 3.2e-17 93.2 94 57.4
Rhsim11G0175900 Rhododendron simsii HOM05D001065 ORTHO05D002020 3.2e-17 93.2 184 38.0
PSO675G2415 Papaver somniferum HOM05D001065 ORTHO05D002020 5.4e-17 92.4 108 53.7
Hund00280 Selenicereus undatus HOM05D001065 ORTHO05D002020 9.2e-17 91.7 167 40.7
PSO541G5612 Papaver somniferum HOM05D001065 ORTHO05D002020 1.2e-16 91.3 158 43.7
SGA_v2.0_scaffold58G20547 Striga asiatica HOM05D001065 ORTHO05D002020 3.5e-16 89.7 108 51.9
Lalb_Chr01g0002611 Lupinus albus HOM05D001065 ORTHO05D002020 1.7e-15 87.4 140 42.1
Ah.01g019480 Amaranthus hybridus HOM05D001065 ORTHO05D002020 2.3e-15 87.0 93 51.6
Sc08g0000450 Simmondsia chinensis HOM05D001065 ORTHO05D002020 3.9e-15 86.3 150 43.3
vmacro02117 Vaccinium macrocarpon HOM05D001065 ORTHO05D002020 6.6e-15 85.5 175 37.7
Cc02_g17680 Coffea canephora HOM05D001065 ORTHO05D002020 1.5e-14 84.3 89 51.7
Sabra09G0088000 Salix brachista HOM05D001065 ORTHO05D002020 1.5e-14 84.3 179 39.1
ECA236G0111 Erigeron canadensis HOM05D001065 ORTHO05D002020 2.0e-11 73.9 78 56.4
Peaxi162Scf00016g00832 Petunia axillaris HOM05D001065 ORTHO05D002020 4.4e-11 72.8 171 39.2
Dinv42072 Davidia involucrata HOM05D001065 ORTHO05D002020 7.5e-11 72.0 112 44.6
SHI05410 Sapria himalayana HOM05D001065 ORTHO05D033638 1.7e-10 70.9 103 43.7
HPP92_009468 Vanilla planifolia HOM05D001065 ORTHO05D002020 2.2e-10 70.5 85 44.7
PGSC0003DMG400000702 Solanum tuberosum HOM05D001065 ORTHO05D002020 2.9e-10 70.1 173 35.8
Lsat_1_v5_gn_7_89080 Lactuca sativa HOM05D001065 ORTHO05D002020 6.4e-10 68.9 72 52.8
Nitab4.5_0001794g0100 Nicotiana tabacum HOM05D001065 ORTHO05D002020 6.4e-10 68.9 110 45.5
Solyc01g109510.3 Solanum lycopersicum HOM05D001065 ORTHO05D002020 8.3e-10 68.6 110 40.9
Sopen01g051700 Solanum pennellii HOM05D001065 ORTHO05D002020 1.1e-09 68.2 110 40.9
CAN.G322.127 Capsicum annuum HOM05D001065 ORTHO05D002020 2.4e-09 67.0 173 35.8
CDE04G1217 Ceratophyllum demersum HOM05D001065 ORTHO05D002020 9.2e-09 65.1 107 43.0
Nitab4.5_0009466g0040 Nicotiana tabacum HOM05D001065 ORTHO05D002020 9.2e-09 65.1 165 38.2
HanXRQChr16g0505791 Helianthus annuus HOM05D001065 ORTHO05D002020 1.6e-08 64.3 109 44.0
CDE06G0945 Ceratophyllum demersum HOM05D001065 ORTHO05D002020 7.8e-08 62.0 167 32.9
unitig_744.g24246 Utricularia gibba HOM05D001065 ORTHO05D002020 1.0e-07 61.6 73 45.2
ATR0733G231 Amborella trichopoda HOM05D001065 ORTHO05D002020 1.3e-07 61.2 102 39.2


User provided reference genes

Program Settings