Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 5.3e-45 184.1 102 100.0
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 4.5e-36 154.5 90 96.7
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 1.3e-35 152.9 90 95.6
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 5.0e-35 151.0 91 93.4
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 1.0e-32 143.3 91 90.1
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 1.4e-32 142.9 90 88.9
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 1.4e-32 142.9 90 88.9
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.0e-31 139.0 88 86.4
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 2.2e-30 135.6 90 82.2
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 2.2e-30 135.6 88 84.1
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 3.7e-30 134.8 90 82.2
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 3.7e-30 134.8 102 76.5
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 8.3e-30 133.7 102 74.5
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 1.1e-29 133.3 90 78.9
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 1.1e-29 133.3 88 81.8
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 1.4e-29 132.9 90 81.1
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 1.8e-29 132.5 90 82.2
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 1.8e-29 132.5 90 82.2
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 1.8e-29 132.5 88 83.0
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 2.4e-29 132.1 90 78.9
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 2.4e-29 132.1 90 80.0
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 3.1e-29 131.7 88 80.7
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 4.1e-29 131.3 90 81.1
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 4.1e-29 131.3 90 77.8
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 5.4e-29 131.0 88 79.5
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 5.4e-29 131.0 90 80.0
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 7.0e-29 130.6 90 77.8
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 7.0e-29 130.6 90 77.8
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 7.0e-29 130.6 102 74.5
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 9.1e-29 130.2 102 74.5
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 1.2e-28 129.8 105 74.3
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 1.6e-28 129.4 102 72.5
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 1.6e-28 129.4 90 77.8
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 1.6e-28 129.4 90 76.7
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 2.0e-28 129.0 90 76.7
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 2.0e-28 129.0 88 79.5
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 2.0e-28 129.0 88 78.4
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 2.0e-28 129.0 90 77.8
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 2.7e-28 128.6 90 77.8
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 3.5e-28 128.3 90 77.8
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 3.5e-28 128.3 88 80.7
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 7.7e-28 127.1 90 76.7
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 7.7e-28 127.1 90 77.8
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.0e-27 126.7 88 78.4
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 1.0e-27 126.7 90 75.6
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.0e-27 126.7 88 78.4
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 1.3e-27 126.3 90 76.7
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 1.3e-27 126.3 90 75.6
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 1.7e-27 125.9 90 76.7
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.7e-27 125.9 90 75.6
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.7e-27 125.9 90 74.4
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 2.3e-27 125.6 88 77.3
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 2.3e-27 125.6 90 74.4
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 2.3e-27 125.6 88 78.4
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 2.3e-27 125.6 100 73.0
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 2.3e-27 125.6 90 78.9
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 2.3e-27 125.6 90 76.7
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 2.9e-27 125.2 88 75.0
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 2.9e-27 125.2 90 76.7
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 2.9e-27 125.2 88 76.1
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 3.8e-27 124.8 90 75.6
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 3.8e-27 124.8 102 70.6
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 5.0e-27 124.4 90 75.6
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 5.0e-27 124.4 90 74.4
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 6.5e-27 124.0 88 79.5
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 6.5e-27 124.0 90 75.6
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 8.6e-27 123.6 88 77.3
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 8.6e-27 123.6 90 73.3
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 8.6e-27 123.6 90 74.4
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.1e-26 123.2 90 73.3
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 1.5e-26 122.9 90 73.3
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 2.5e-26 122.1 88 75.0
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 2.5e-26 122.1 93 72.0
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 2.5e-26 122.1 90 73.3
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 3.3e-26 121.7 88 75.0
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 3.3e-26 121.7 88 75.0
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 3.3e-26 121.7 88 77.3
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 4.2e-26 121.3 88 73.9
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 4.2e-26 121.3 88 73.9
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 4.2e-26 121.3 90 72.2
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 5.5e-26 120.9 88 75.0
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 7.2e-26 120.6 88 73.9
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 7.2e-26 120.6 88 73.9
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 7.2e-26 120.6 88 73.9
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 9.5e-26 120.2 88 73.9
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 9.5e-26 120.2 88 73.9
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 9.5e-26 120.2 88 75.0
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 1.2e-25 119.8 90 71.1
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 1.6e-25 119.4 88 73.9
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 1.6e-25 119.4 89 70.8
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 2.8e-25 118.6 88 72.7
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 2.8e-25 118.6 88 72.7
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 6.1e-25 117.5 88 72.7
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 3.0e-24 115.2 90 72.2
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 4.0e-24 114.8 86 73.3
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 6.8e-24 114.0 90 73.3
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 6.8e-24 114.0 90 72.2
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 1.5e-23 112.8 88 71.6
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 1.5e-23 112.8 90 71.1
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 1.5e-23 112.8 87 73.6
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 1.5e-23 112.8 87 73.6
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 5.7e-23 110.9 90 70.0
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 5.7e-23 110.9 88 67.0
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 7.5e-23 110.5 86 68.6
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 1.7e-22 109.4 78 75.6
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 1.4e-21 106.3 98 65.3
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 2.0e-20 102.4 115 56.5
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 3.3e-18 95.1 90 58.9
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 4.3e-18 94.7 87 60.9
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 4.7e-17 91.3 68 72.1
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 1.6e-12 76.3 88 46.6
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 6.0e-12 74.3 88 46.6
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 2.3e-11 72.4 51 76.5
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 1.9e-10 69.3 46 80.4
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 7.3e-10 67.4 54 70.4
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 7.3e-10 67.4 88 44.3
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 1.2e-09 66.6 44 81.8
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 6.2e-09 64.3 46 76.1


User provided reference genes

Program Settings