Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 8.8e-193 676.8 344 100.0
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 1.8e-121 439.9 376 66.2
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 2.2e-119 433.0 356 66.0
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 9.7e-115 417.5 376 61.4
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 1.4e-110 403.7 375 61.1
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.1e-107 394.0 322 65.5
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 3.3e-107 392.5 376 59.3
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 4.3e-107 392.1 322 65.2
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 2.2e-106 389.8 322 64.9
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.4e-105 387.1 376 58.2
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 6.9e-105 384.8 313 65.2
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 6.9e-105 384.8 313 65.2
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 1.5e-104 383.6 376 55.9
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 2.0e-104 383.3 375 56.3
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 2.6e-104 382.9 379 56.2
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 3.4e-104 382.5 379 56.2
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 4.5e-104 382.1 376 55.6
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 1.3e-103 380.6 306 65.0
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 1.3e-103 380.6 376 56.1
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 2.2e-103 379.8 376 58.5
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 2.9e-103 379.4 376 57.4
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 3.8e-103 379.0 376 56.1
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 2.5e-102 376.3 378 55.8
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 2.5e-102 376.3 376 56.6
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 3.2e-102 375.9 376 55.6
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 2.1e-101 373.2 266 71.1
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 7.9e-101 371.3 306 64.4
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 7.9e-101 371.3 377 56.2
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 1.8e-100 370.2 337 59.6
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 2.3e-100 369.8 376 56.9
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 5.1e-100 368.6 376 55.1
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.5e-99 367.1 322 61.8
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 2.0e-99 366.7 306 63.7
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.6e-99 366.3 387 53.5
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 9.7e-99 364.4 301 63.8
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 3.7e-98 362.5 376 54.3
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 3.7e-98 362.5 306 61.1
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 4.8e-98 362.1 374 56.4
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 6.3e-98 361.7 306 62.4
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 6.3e-98 361.7 380 55.8
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 1.1e-97 360.9 375 56.0
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 3.1e-97 359.4 375 57.3
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 7.0e-97 358.2 398 52.3
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 7.0e-97 358.2 306 62.4
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 9.1e-97 357.8 306 63.4
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.2e-96 357.5 392 51.5
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 1.6e-96 357.1 306 62.7
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 2.0e-96 356.7 375 53.1
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 2.6e-96 356.3 289 65.1
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 3.5e-96 355.9 380 55.5
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 4.5e-96 355.5 309 62.1
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 5.9e-96 355.1 375 53.1
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 1.0e-95 354.4 376 52.4
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 1.0e-95 354.4 375 55.2
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 1.7e-95 353.6 322 59.0
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.2e-95 353.2 403 51.6
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 2.9e-95 352.8 375 55.7
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 6.5e-95 351.7 306 60.1
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 8.5e-95 351.3 322 58.7
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 1.9e-94 350.1 306 59.8
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 3.2e-94 349.4 306 60.1
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 3.2e-94 349.4 313 60.4
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 4.2e-94 349.0 375 52.3
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 5.5e-94 348.6 306 58.8
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 5.5e-94 348.6 308 61.0
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 1.6e-93 347.1 376 51.6
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 1.6e-93 347.1 376 51.6
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 1.6e-93 347.1 313 59.1
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 2.1e-93 346.7 306 59.2
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 3.6e-93 345.9 306 58.5
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 3.6e-93 345.9 375 51.7
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 4.7e-93 345.5 375 54.1
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 8.0e-93 344.7 302 59.9
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 2.3e-92 343.2 376 53.5
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 3.0e-92 342.8 306 59.2
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 3.0e-92 342.8 306 58.5
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 3.0e-92 342.8 306 58.5
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 3.0e-92 342.8 306 58.5
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 5.2e-92 342.0 413 49.4
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 6.7e-92 341.7 313 59.7
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 8.8e-92 341.3 375 50.7
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 8.8e-92 341.3 313 59.7
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 8.8e-92 341.3 376 51.9
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 8.8e-92 341.3 322 57.5
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 1.5e-91 340.5 376 53.2
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 2.6e-91 339.7 306 57.5
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 4.4e-91 339.0 375 51.5
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 5.7e-91 338.6 307 58.6
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 1.3e-90 337.4 376 51.9
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 8.2e-90 334.7 322 56.8
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 2.0e-88 330.1 375 50.1
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 1.0e-87 327.8 306 58.8
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 1.3e-87 327.4 306 55.9
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 2.2e-87 326.6 306 56.2
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 2.2e-87 326.6 305 58.0
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 3.2e-86 322.8 350 50.3
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 2.7e-85 319.7 311 54.3
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 3.6e-85 319.3 226 69.0
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 8.8e-84 314.7 373 52.5
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 2.6e-83 313.2 379 49.1
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 2.8e-82 309.7 319 53.0
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 5.4e-81 305.4 306 51.3
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 1.7e-79 300.4 352 50.9
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.1e-78 297.7 333 53.2
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 7.0e-73 278.5 335 48.7
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 7.8e-64 248.4 313 47.9
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 1.3e-63 247.7 312 45.2
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 3.1e-60 236.5 316 43.7
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 2.7e-56 223.4 270 44.4
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 3.0e-55 219.9 106 100.0
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 5.0e-55 219.2 344 38.4
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 4.0e-52 209.5 143 68.5
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 2.4e-49 200.3 120 77.5
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 3.5e-48 196.4 303 40.6
QL11p042198 Quercus lobata HOM05D000011 ORTHO05D000018 1.7e-42 177.6 89 97.8
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 2.2e-42 177.2 96 85.4
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 9.2e-41 171.8 144 61.1
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.1e-40 170.6 94 81.9
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 2.5e-38 163.7 259 41.3
QL11p018632 Quercus lobata HOM05D000396 ORTHO05D001816 2.4e-36 157.1 80 96.2
QL09p021925 Quercus lobata HOM05D000132 ORTHO05D000058 1.4e-33 147.9 74 97.3
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 5.4e-33 146.0 272 34.9
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 1.6e-29 134.4 69 95.7
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 1.1e-20 105.1 245 30.2
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 5.8e-19 99.4 83 55.4
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 1.9e-17 94.4 269 29.4
QL11p020175 Quercus lobata HOM05D011350 ORTHO05D000370 5.1e-15 86.3 44 95.5
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 4.8e-13 79.7 47 83.0
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 8.1e-13 79.0 42 83.3
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 9.0e-12 75.5 199 33.7
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 7.6e-11 72.4 111 40.5
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 2.2e-10 70.9 96 45.8


User provided reference genes

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