Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p026963 Quercus lobata HOM05D004105 ORTHO05D005649 1.9e-144 515.8 251 100.0
QL11p026924 Quercus lobata HOM05D004105 ORTHO05D005649 5.6e-104 381.3 312 67.0
Ciclev10031414m.g Citrus clementina HOM05D004105 ORTHO05D005649 1.6e-98 363.2 312 63.5
CiPaw.11G003700 Carya illinoinensis HOM05D004105 ORTHO05D005649 6.0e-98 361.3 312 64.7
Haze_07185 Corylus avellana HOM05D004105 ORTHO05D005649 1.0e-97 360.5 312 62.8
Manes.06G122800 Manihot esculenta HOM05D004105 ORTHO05D005649 1.0e-97 360.5 312 62.8
TWI39G0681 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 3.9e-97 358.6 312 62.8
Dinv11203 Davidia involucrata HOM05D004105 ORTHO05D005649 5.1e-97 358.2 312 62.2
Cfa018749 Carpinus fangiana HOM05D004105 ORTHO05D005649 8.7e-97 357.5 312 62.5
TWI23G0168 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 1.1e-96 357.1 312 63.1
Potri.015G101100 Populus trichocarpa HOM05D004105 ORTHO05D005649 9.6e-96 354.0 314 62.1
CsaV3_7G007260 Cucumis sativus L. HOM05D004105 ORTHO05D005649 2.1e-95 352.8 312 62.2
Duzib205G0778 Durio zibethinus HOM05D004105 ORTHO05D005649 2.1e-95 352.8 312 62.5
Duzib084G0440 Durio zibethinus HOM05D004105 ORTHO05D005649 2.8e-95 352.4 312 62.2
Manes.14G048100 Manihot esculenta HOM05D004105 ORTHO05D005649 4.8e-95 351.7 312 61.5
Rhsim08G0193500 Rhododendron simsii HOM05D004105 ORTHO05D005649 8.1e-95 350.9 312 61.2
Atru.chr6.1872 Acer truncatum HOM05D004105 ORTHO05D005649 1.1e-94 350.5 312 61.2
ClCG09G016340 Citrullus lanatus HOM05D004105 ORTHO05D005649 1.4e-94 350.1 312 61.2
Thecc.03G135100 Theobroma cacao HOM05D004105 ORTHO05D005649 1.4e-94 350.1 312 61.9
Oeu036699.1 Olea europaea HOM05D004105 ORTHO05D005649 2.4e-94 349.4 312 59.6
Eucgr.K00727 Eucalyptus grandis HOM05D004105 ORTHO05D005649 3.1e-94 349.0 312 60.9
Duzib068G0759 Durio zibethinus HOM05D004105 ORTHO05D005649 5.3e-94 348.2 312 62.2
Gohir.A07G048500 Gossypium hirsutum HOM05D004105 ORTHO05D005649 5.3e-94 348.2 312 61.5
Sabra15G0121600 Salix brachista HOM05D004105 ORTHO05D005649 5.3e-94 348.2 312 61.2
TAR371G1205 Trochodendron aralioides HOM05D004105 ORTHO05D005649 5.3e-94 348.2 312 59.9
MD14G1151700 Malus domestica HOM05D004105 ORTHO05D005649 6.9e-94 347.8 312 60.3
Rhsim12G0177900 Rhododendron simsii HOM05D004105 ORTHO05D005649 6.9e-94 347.8 312 60.9
RcHm_v2.0_Chr7g0189421 Rosa chinensis HOM05D004105 ORTHO05D005649 6.9e-94 347.8 312 60.6
CSS0005977 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.5e-93 346.7 312 61.2
CSS0020466 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.5e-93 346.7 312 61.2
Gohir.D07G052800 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.5e-93 346.7 312 60.9
Gorai.001G055800 Gossypium raimondii HOM05D004105 ORTHO05D005649 1.5e-93 346.7 312 60.9
Cpa.g.sc4.152 Carica papaya HOM05D004105 ORTHO05D005649 2.6e-93 345.9 312 62.2
Lj9C482T3 Lonicera japonica HOM05D004105 ORTHO05D005649 2.6e-93 345.9 312 60.9
vmacro16732 Vaccinium macrocarpon HOM05D004105 ORTHO05D005649 3.4e-93 345.5 312 60.9
MELO3C018572.2 Cucumis melo HOM05D004105 ORTHO05D005649 4.4e-93 345.1 312 60.6
FAN04G0399 Fragaria x ananassa HOM05D004105 ORTHO05D005649 4.4e-93 345.1 312 60.3
FAN13G0496 Fragaria x ananassa HOM05D004105 ORTHO05D005649 4.4e-93 345.1 312 60.6
Sed0023678 Sechium edule HOM05D004105 ORTHO05D005649 4.4e-93 345.1 312 60.9
Peaxi162Scf00681g00117 Petunia axillaris HOM05D004105 ORTHO05D005649 5.8e-93 344.7 312 59.9
PSO017G4116 Papaver somniferum HOM05D004105 ORTHO05D005649 7.6e-93 344.4 312 60.3
FAN08G1339 Fragaria x ananassa HOM05D004105 ORTHO05D005649 9.9e-93 344.0 312 59.9
MD06G1136900 Malus domestica HOM05D004105 ORTHO05D005649 9.9e-93 344.0 312 59.9
AUR62005532 Chenopodium quinoa HOM05D004105 ORTHO05D005649 1.3e-92 343.6 292 62.3
Actinidia08890 Actinidia chinensis HOM05D004105 ORTHO05D005649 1.7e-92 343.2 312 59.9
arahy.Tifrunner.gnm1.ann1.NV4Y6S Arachis hypogaea HOM05D004105 ORTHO05D005649 1.7e-92 343.2 312 60.6
FvH4_5g08950 Fragaria vesca HOM05D004105 ORTHO05D005649 1.7e-92 343.2 312 59.9
FAN18G1589 Fragaria x ananassa HOM05D004105 ORTHO05D005649 1.7e-92 343.2 312 59.9
MSTRG.13687 Avicennia marina HOM05D004105 ORTHO05D005649 2.2e-92 342.8 314 58.9
Gohir.D03G112950 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.2e-92 342.8 298 62.4
Lj1g0022155 Lotus japonicus HOM05D004105 ORTHO05D005649 2.2e-92 342.8 312 59.6
PSO478G2355 Papaver somniferum HOM05D004105 ORTHO05D005649 2.9e-92 342.4 312 60.3
TAR622G0102 Trochodendron aralioides HOM05D004105 ORTHO05D005649 3.8e-92 342.0 312 59.6
Nn4g22230 Nelumbo nucifera HOM05D004105 ORTHO05D005649 4.9e-92 341.7 312 58.3
unitig_32.g11186 Utricularia gibba HOM05D004105 ORTHO05D005649 4.9e-92 341.7 312 59.3
Cc10_g12640 Coffea canephora HOM05D004105 ORTHO05D005649 6.4e-92 341.3 312 59.9
Prupe.5G146800 Prunus persica HOM05D004105 ORTHO05D005649 6.4e-92 341.3 312 59.3
MBI11_g13058_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 8.4e-92 340.9 312 59.3
arahy.Tifrunner.gnm1.ann1.26LP8U Arachis hypogaea HOM05D004105 ORTHO05D005649 1.1e-91 340.5 312 60.6
Hund02468 Selenicereus undatus HOM05D004105 ORTHO05D005649 1.4e-91 340.1 323 57.9
PGSC0003DMG400032546 Solanum tuberosum HOM05D004105 ORTHO05D005649 1.4e-91 340.1 312 60.6
VMungo1309G1206 Vigna mungo HOM05D004105 ORTHO05D005649 1.4e-91 340.1 312 59.3
CAN.G619.6 Capsicum annuum HOM05D004105 ORTHO05D005649 3.2e-91 339.0 312 60.3
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 3.2e-91 339.0 312 58.3
Hma1.2p1_0572F.1_g181070 Hydrangea macrophylla HOM05D004105 ORTHO05D005649 3.2e-91 339.0 312 59.3
Lalb_Chr08g0246741 Lupinus albus HOM05D004105 ORTHO05D005649 3.2e-91 339.0 312 59.0
MBI04_g30438_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 5.4e-91 338.2 312 58.3
TPR.G38501 Trifolium pratense HOM05D004105 ORTHO05D005649 7.1e-91 337.8 312 58.7
HanXRQChr02g0034141 Helianthus annuus HOM05D004105 ORTHO05D005649 9.3e-91 337.4 312 59.0
Solyc04g009200.3 Solanum lycopersicum HOM05D004105 ORTHO05D005649 9.3e-91 337.4 312 59.9
AUR62034822 Chenopodium quinoa HOM05D004105 ORTHO05D005649 1.2e-90 337.0 312 59.3
EL10Ac5g11355 Beta vulgaris HOM05D004105 ORTHO05D005649 1.6e-90 336.7 312 59.3
Gohir.A03G053920 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.6e-90 336.7 314 59.2
Gohir.D03G112900 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.6e-90 336.7 314 59.2
Ca_15293_v3 Cicer arietinum L. HOM05D004105 ORTHO05D005649 2.1e-90 336.3 312 58.7
Sopen04g004330 Solanum pennellii HOM05D004105 ORTHO05D005649 2.1e-90 336.3 312 59.6
AUR62029560 Chenopodium quinoa HOM05D004105 ORTHO05D005649 2.7e-90 335.9 312 59.0
Gohir.A03G054100 Gossypium hirsutum HOM05D004105 ORTHO05D005649 3.5e-90 335.5 314 59.2
Medtr3g118070 Medicago truncatula HOM05D004105 ORTHO05D005649 3.5e-90 335.5 312 58.3
ECA247G3132 Erigeron canadensis HOM05D004105 ORTHO05D005649 4.6e-90 335.1 312 58.7
Peaxi162Scf00334g00121 Petunia axillaris HOM05D004105 ORTHO05D005649 6.0e-90 334.7 312 58.7
AL5G28210 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 1.0e-89 334.0 312 59.0
Thhalv10010337m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 1.0e-89 334.0 312 58.3
AT3G48730 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 1.3e-89 333.6 312 59.0
Sp5g13290 Schrenkiella parvula HOM05D004105 ORTHO05D005649 1.3e-89 333.6 312 58.3
ATR0582G244 Amborella trichopoda HOM05D004105 ORTHO05D005649 1.7e-89 333.2 312 57.7
Glyma.04G002900 Glycine max HOM05D004105 ORTHO05D005649 1.7e-89 333.2 312 58.0
Gorai.003G119100 Gossypium raimondii HOM05D004105 ORTHO05D005649 1.7e-89 333.2 314 58.6
Haze_07186 Corylus avellana HOM05D004105 ORTHO05D005649 2.3e-89 332.8 313 59.7
THA.LOC104818177 Tarenaya hassleriana HOM05D004105 ORTHO05D005649 2.3e-89 332.8 312 58.0
Zm00001eb291360 Zea mays HOM05D004105 ORTHO05D005649 2.3e-89 332.8 312 57.4
Lsat_1_v5_gn_1_32701 Lactuca sativa HOM05D004105 ORTHO05D005649 3.9e-89 332.0 311 58.8
Carub.0005s1489 Capsella rubella HOM05D004105 ORTHO05D005649 5.1e-89 331.6 312 58.3
DCAR_021646 Daucus carota HOM05D004105 ORTHO05D005649 5.1e-89 331.6 312 58.0
CARHR277440 Cardamine hirsuta HOM05D004105 ORTHO05D005649 6.6e-89 331.3 312 57.7
Psat5g001920 Pisum sativum HOM05D004105 ORTHO05D005649 6.6e-89 331.3 312 58.0
Aqoxy3G01668 Aquilegia oxysepala HOM05D004105 ORTHO05D005649 8.7e-89 330.9 312 58.0
SGA_v2.0_scaffold99G29471 Striga asiatica HOM05D004105 ORTHO05D005649 8.7e-89 330.9 312 57.4
Glyma.06G002900 Glycine max HOM05D004105 ORTHO05D005649 2.5e-88 329.3 312 57.7
BcaC01g02611 Brassica carinata HOM05D004105 ORTHO05D005649 4.3e-88 328.6 312 57.1
C03p62870 Brassica napus HOM05D004105 ORTHO05D005649 4.3e-88 328.6 312 57.1
BolC3t18541H Brassica oleracea HOM05D004105 ORTHO05D005649 4.3e-88 328.6 312 57.1
PGR083G1562 Punica granatum HOM05D004105 ORTHO05D005649 4.3e-88 328.6 312 58.0
Sp2g26660 Schrenkiella parvula HOM05D004105 ORTHO05D005649 5.6e-88 328.2 312 57.1
Os08g0532200 Oryza sativa ssp. japonica HOM05D004105 ORTHO05D005649 7.3e-88 327.8 311 56.3
Phvul.009G118500 Phaseolus vulgaris HOM05D004105 ORTHO05D005649 7.3e-88 327.8 312 57.7
BcaB02g09750 Brassica carinata HOM05D004105 ORTHO05D005649 9.6e-88 327.4 312 56.7
ECA232G0449 Erigeron canadensis HOM05D004105 ORTHO05D005649 1.6e-87 326.6 312 56.1
Carub.0008s2430 Capsella rubella HOM05D004105 ORTHO05D005649 2.1e-87 326.2 312 57.1
AT5G63570 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 2.8e-87 325.9 312 56.7
A06p30190 Brassica napus HOM05D004105 ORTHO05D005649 3.6e-87 325.5 312 56.7
BraA06t25970Z Brassica rapa HOM05D004105 ORTHO05D005649 3.6e-87 325.5 312 56.7
CDE05G1664 Ceratophyllum demersum HOM05D004105 ORTHO05D005649 3.6e-87 325.5 312 57.1
AL8G40650 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 4.8e-87 325.1 312 56.4
BcaB04g19926 Brassica carinata HOM05D004105 ORTHO05D005649 4.8e-87 325.1 312 56.7
GSVIVG01008589001 Vitis vinifera HOM05D004105 ORTHO05D005649 6.2e-87 324.7 282 63.5
HanXRQChr09g0273511 Helianthus annuus HOM05D004105 ORTHO05D005649 1.1e-86 323.9 312 55.8
BraA09t36484Z Brassica rapa HOM05D004105 ORTHO05D005649 1.4e-86 323.6 312 56.1
BcaC04g23339 Brassica carinata HOM05D004105 ORTHO05D005649 2.4e-86 322.8 312 56.1
C09p09420 Brassica napus HOM05D004105 ORTHO05D005649 2.4e-86 322.8 312 56.1
BolC9t53854H Brassica oleracea HOM05D004105 ORTHO05D005649 3.1e-86 322.4 312 56.1
Thhalv10004138m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 6.9e-86 321.2 312 56.1
A09p08350 Brassica napus HOM05D004105 ORTHO05D005649 2.0e-85 319.7 312 55.8
HPP92_000338 Vanilla planifolia HOM05D004105 ORTHO05D005649 2.6e-85 319.3 312 55.4
Aa31LG1G18370 Aethionema arabicum HOM05D004105 ORTHO05D005649 5.8e-85 318.2 312 56.1
SEGI_17449 Sequoiadendron giganteum HOM05D004105 ORTHO05D005649 9.9e-85 317.4 311 56.3
Sc04g0000430 Simmondsia chinensis HOM05D004105 ORTHO05D005649 1.1e-83 313.9 313 55.6
arahy.Tifrunner.gnm1.ann1.M8Q52W Arachis hypogaea HOM05D004105 ORTHO05D005649 1.9e-83 313.2 311 56.6
SHI10683 Sapria himalayana HOM05D004105 ORTHO05D005649 4.2e-83 312.0 312 54.5
Nitab4.5_0011777g0030 Nicotiana tabacum HOM05D004105 ORTHO05D005649 1.2e-82 310.5 287 59.6
SMO337G0012 Selaginella moellendorffii HOM05D004105 ORTHO05D005649 2.1e-82 309.7 312 53.5
Nitab4.5_0001089g0010 Nicotiana tabacum HOM05D004105 ORTHO05D005649 2.3e-81 306.2 234 68.4
MBI04_g30114_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 3.0e-81 305.8 234 67.1
Pp3c27_4150 Physcomitrium patens HOM05D004105 ORTHO05D005649 3.0e-81 305.8 312 52.9
Pp3c16_12390 Physcomitrium patens HOM05D004105 ORTHO05D005649 1.5e-80 303.5 312 52.9
AagrBONN_evm.TU.Sc2ySwM_368.3191 Anthoceros agrestis HOM05D004105 ORTHO05D005649 2.8e-79 299.3 311 52.4
MCO04G178 Micromonas commoda HOM05D004105 ORTHO05D005649 1.1e-78 297.4 312 53.5
CBR_g49915 Chara braunii HOM05D004105 ORTHO05D005649 6.9e-78 294.7 312 52.9
Mapoly0094s0038 Marchantia polymorpha HOM05D004105 ORTHO05D005649 5.5e-75 285.0 312 51.9
Actinidia36827 Actinidia chinensis HOM05D004105 ORTHO05D030951 2.5e-72 276.2 262 59.2
Cre03.g158000 Chlamydomonas reinhardtii HOM05D004105 ORTHO05D005649 3.1e-70 269.2 311 49.5
PRCOL_00001317 Prasinoderma coloniale HOM05D004105 ORTHO05D005649 2.6e-69 266.2 312 49.0
Migut.E00706 Erythranthe guttata HOM05D004105 ORTHO05D005649 1.3e-68 263.8 295 52.5
Potri.012G103000 Populus trichocarpa HOM05D004105 ORTHO05D005649 6.7e-65 251.5 310 49.7
Actinidia18331 Actinidia chinensis HOM05D004105 ORTHO05D005649 4.2e-59 232.3 258 52.3
HanXRQChr16g0498371 Helianthus annuus HOM05D004105 ORTHO05D005649 6.1e-58 228.4 192 62.0
Cfa018748 Carpinus fangiana HOM05D004105 ORTHO05D005649 1.3e-52 210.7 123 84.6
arahy.Tifrunner.gnm1.ann1.IMIB52 Arachis hypogaea HOM05D004105 ORTHO05D005649 3.0e-49 199.5 122 80.3
Nitab4.5_0002672g0010 Nicotiana tabacum HOM05D004105 ORTHO05D029789 5.7e-40 168.7 273 42.1
Migut.E00611 Erythranthe guttata HOM05D004105 ORTHO05D005649 7.5e-40 168.3 103 78.6
RcHm_v2.0_Chr7g0199591 Rosa chinensis HOM05D004105 ORTHO05D005649 2.1e-34 150.2 131 60.3
Lalb_Chr19g0131561 Lupinus albus HOM05D004105 ORTHO05D239630 1.0e-33 147.9 90 76.7
Nn3g16369 Nelumbo nucifera HOM05D004105 ORTHO05D005649 6.8e-25 118.6 99 64.6
QL11p026928 Quercus lobata HOM05D004105 ORTHO05D337244 2.2e-23 113.6 100 63.0
CDE02G1094 Ceratophyllum demersum HOM05D004105 ORTHO05D030951 8.3e-23 111.7 140 47.1
Sc22g0003640 Simmondsia chinensis HOM05D004105 ORTHO05D388736 5.9e-21 105.5 68 72.1
CSS0046398 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D030951 2.3e-20 103.6 116 49.1
TAR629G2294 Trochodendron aralioides HOM05D004105 ORTHO05D005649 4.9e-15 85.9 65 66.2
TAR629G2661 Trochodendron aralioides HOM05D004105 ORTHO05D005649 1.5e-11 74.3 54 68.5
CDE11G0578 Ceratophyllum demersum HOM05D004105 ORTHO05D007961 1.5e-08 64.3 61 54.1
Pp3s30_720 Physcomitrium patens HOM05D000826 ORTHO05D004603 7.5e-08 62.0 195 26.7
Glyma.14G221932 Glycine max HOM05D004105 ORTHO05D029789 1.3e-07 61.2 45 64.4
AUR62029558 Chenopodium quinoa HOM05D004105 ORTHO05D005649 4.9e-07 59.3 28 96.4
Sabra12G0075400 Salix brachista HOM05D004105 ORTHO05D005649 2.4e-06 57.0 43 67.4


User provided reference genes

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