Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p013649 Quercus lobata HOM05D002785 ORTHO05D003042 2.6e-43 178.3 91 100.0
Sed0002443 Sechium edule HOM05D002785 ORTHO05D003042 1.5e-11 72.8 109 44.0
QL05p064786 Quercus lobata HOM05D002785 ORTHO05D003042 4.5e-11 71.2 141 39.0
Haze_05954 Corylus avellana HOM05D002785 ORTHO05D003042 2.2e-10 68.9 145 37.2
Cfa000764 Carpinus fangiana HOM05D002785 ORTHO05D003042 2.9e-10 68.6 145 36.6
CiPaw.10G110800 Carya illinoinensis HOM05D002785 ORTHO05D003042 2.9e-10 68.6 144 36.8
Lj1C1157G2 Lonicera japonica HOM05D002785 ORTHO05D003042 2.1e-08 62.4 145 35.2
Cpa.g.sc285.7 Carica papaya HOM05D002785 ORTHO05D003042 3.6e-08 61.6 145 33.8
vmacro03460 Vaccinium macrocarpon HOM05D002785 ORTHO05D003042 3.6e-08 61.6 111 39.6
CSS0011878 Camellia sinensis var. sinensis HOM05D002785 ORTHO05D003042 6.1e-08 60.8 145 33.1
Cc09_g07030 Coffea canephora HOM05D002785 ORTHO05D003042 7.9e-08 60.5 145 33.8
THA.LOC104812694 Tarenaya hassleriana HOM05D002785 ORTHO05D003042 1.0e-07 60.1 139 33.8
Ciclev10014133m.g Citrus clementina HOM05D002785 ORTHO05D003042 1.4e-07 59.7 145 33.8
MD05G1264100 Malus domestica HOM05D002785 ORTHO05D003042 1.4e-07 59.7 145 33.1
TWI63G0524 Tripterygium wilfordii HOM05D002785 ORTHO05D003042 1.4e-07 59.7 140 33.6
Aa31LG6G11850 Aethionema arabicum HOM05D002785 ORTHO05D003042 1.8e-07 59.3 140 34.3
MSTRG.7571 Avicennia marina HOM05D002785 ORTHO05D003042 1.8e-07 59.3 69 50.7
ClCG01G008850 Citrullus lanatus HOM05D002785 ORTHO05D003042 1.8e-07 59.3 145 33.1
MELO3C021816.2 Cucumis melo HOM05D002785 ORTHO05D003042 1.8e-07 59.3 145 33.1
Dinv05937 Davidia involucrata HOM05D002785 ORTHO05D003042 1.8e-07 59.3 145 32.4
ECA234G1849 Erigeron canadensis HOM05D002785 ORTHO05D003042 1.8e-07 59.3 140 33.6
HanXRQChr03g0090051 Helianthus annuus HOM05D002785 ORTHO05D003042 1.8e-07 59.3 140 34.3
HPP92_013191 Vanilla planifolia HOM05D002785 ORTHO05D003042 1.8e-07 59.3 145 31.0
CDE05G2152 Ceratophyllum demersum HOM05D002785 ORTHO05D003042 3.0e-07 58.5 151 31.8
Thecc.10G003200 Theobroma cacao HOM05D002785 ORTHO05D003042 3.0e-07 58.5 145 33.8
Atru.chr3.2242 Acer truncatum HOM05D002785 ORTHO05D003042 3.9e-07 58.2 140 34.3
Prupe.4G101500 Prunus persica HOM05D002785 ORTHO05D003042 3.9e-07 58.2 145 32.4
DCAR_007810 Daucus carota HOM05D002785 ORTHO05D003042 5.1e-07 57.8 145 31.7
Sed0027329 Sechium edule HOM05D002785 ORTHO05D003042 5.1e-07 57.8 145 32.4
CsaV3_1G037710 Cucumis sativus L. HOM05D002785 ORTHO05D003042 8.8e-07 57.0 145 32.4
MD10G1242100 Malus domestica HOM05D002785 ORTHO05D003042 1.1e-06 56.6 129 33.3
Manes.14G126700 Manihot esculenta HOM05D002785 ORTHO05D003042 1.1e-06 56.6 145 31.7
PSO675G2450 Papaver somniferum HOM05D002785 ORTHO05D003042 1.1e-06 56.6 145 31.0
RcHm_v2.0_Chr5g0018311 Rosa chinensis HOM05D002785 ORTHO05D003042 1.1e-06 56.6 145 31.7
ATR0165G017 Amborella trichopoda HOM05D002785 ORTHO05D003042 1.5e-06 56.2 145 33.1
COL.COLO4_19340 Corchorus olitorius HOM05D002785 ORTHO05D003042 1.5e-06 56.2 145 33.1
Hma1.2p1_0159F.1_g070480 Hydrangea macrophylla HOM05D002785 ORTHO05D003042 1.5e-06 56.2 145 32.4
PGR083G1445 Punica granatum HOM05D002785 ORTHO05D003042 1.5e-06 56.2 144 34.7
AL1G44660 Arabidopsis lyrata HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
BcaB07g32701 Brassica carinata HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
BcaC05g27084 Brassica carinata HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
BcaNung05822 Brassica carinata HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
A09p35810 Brassica napus HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
C05p29670 Brassica napus HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
BolC5t31696H Brassica oleracea HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
BraA09t39104Z Brassica rapa HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
Carub.0001s2887 Capsella rubella HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
CARHR030050 Cardamine hirsuta HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
Thhalv10006701m.g Eutrema salsugineum HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
Nn3g20311 Nelumbo nucifera HOM05D002785 ORTHO05D003042 2.0e-06 55.8 145 31.7
Sp1g26510 Schrenkiella parvula HOM05D002785 ORTHO05D003042 2.0e-06 55.8 49 59.2
AT1G30610 Arabidopsis thaliana HOM05D002785 ORTHO05D003042 2.6e-06 55.5 49 57.1
FAN21G2235 Fragaria x ananassa HOM05D002785 ORTHO05D003042 2.6e-06 55.5 145 31.7
PSO675G7541 Papaver somniferum HOM05D002785 ORTHO05D003042 2.6e-06 55.5 145 30.3
GSVIVG01021752001 Vitis vinifera HOM05D002785 ORTHO05D003042 2.6e-06 55.5 145 32.4
CDE02G3670 Ceratophyllum demersum HOM05D002785 ORTHO05D003042 3.3e-06 55.1 145 31.7
Glyma.11G110600 Glycine max HOM05D002785 ORTHO05D003042 3.3e-06 55.1 145 31.0
Lsat_1_v5_gn_4_51020 Lactuca sativa HOM05D002785 ORTHO05D003042 3.3e-06 55.1 49 57.1
VMungo1127G0626 Vigna mungo HOM05D002785 ORTHO05D003042 3.3e-06 55.1 49 57.1
Aqoxy4G00056 Aquilegia oxysepala HOM05D002785 ORTHO05D003042 4.4e-06 54.7 145 31.7
FvH4_3g11350 Fragaria vesca HOM05D002785 ORTHO05D003042 4.4e-06 54.7 145 31.0
FAN16G0575 Fragaria x ananassa HOM05D002785 ORTHO05D003042 4.4e-06 54.7 145 31.0
Phvul.011G017600 Phaseolus vulgaris HOM05D002785 ORTHO05D003042 4.4e-06 54.7 49 57.1
Potri.001G459900 Populus trichocarpa HOM05D002785 ORTHO05D003042 4.4e-06 54.7 139 31.7
Oeu008977.1 Olea europaea HOM05D002785 ORTHO05D003042 5.7e-06 54.3 49 57.1
PGR102G1548 Punica granatum HOM05D002785 ORTHO05D003042 5.7e-06 54.3 81 39.5
Sc02g0003170 Simmondsia chinensis HOM05D002785 ORTHO05D003042 5.7e-06 54.3 144 29.9
TAR624G1101 Trochodendron aralioides HOM05D002785 ORTHO05D003042 5.7e-06 54.3 145 30.3
TAR624G1304 Trochodendron aralioides HOM05D002785 ORTHO05D003042 5.7e-06 54.3 145 30.3
Migut.M01943 Erythranthe guttata HOM05D002785 ORTHO05D003042 7.4e-06 53.9 49 59.2
Rhsim13G0125900 Rhododendron simsii HOM05D002785 ORTHO05D003042 7.4e-06 53.9 56 50.0


User provided reference genes

Program Settings